Wall clock time and date at job start Tue Mar 31 2020 13:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47203 * 2 1 4 4 C 1.46498 * 120.00167 * 274.60586 * 3 2 1 5 5 C 1.50703 * 109.47370 * 270.00256 * 4 3 2 6 6 H 1.08002 * 119.99321 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00147 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00027 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99936 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47449 * 89.99518 * 9 7 5 11 11 H 1.48503 * 109.47164 * 210.00119 * 9 7 5 12 12 H 1.48510 * 109.47044 * 329.99477 * 9 7 5 13 13 C 1.34775 * 119.99878 * 94.60754 * 3 2 1 14 14 O 1.21588 * 120.00092 * 4.98414 * 13 3 2 15 15 C 1.47568 * 119.99891 * 184.98694 * 13 3 2 16 16 C 1.39551 * 120.67895 * 304.14332 * 15 13 3 17 17 C 1.39939 * 118.14195 * 179.97438 * 16 15 13 18 18 C 1.39862 * 119.88953 * 359.79194 * 17 16 15 19 19 N 1.32138 * 119.96404 * 0.35423 * 18 17 16 20 20 C 1.32194 * 122.36509 * 359.79435 * 19 18 17 21 21 O 1.35227 * 119.50148 * 179.97438 * 20 19 18 22 22 C 1.50614 * 121.28751 * 180.72296 * 18 17 16 23 23 C 1.52591 * 111.23283 * 337.06008 * 22 18 17 24 24 C 1.53434 * 109.42009 * 54.86468 * 23 22 18 25 25 C 1.47259 * 119.75931 * 179.77029 * 17 16 15 26 26 O 1.21280 * 121.16659 * 348.62880 * 25 17 16 27 27 H 1.09002 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47378 * 300.00216 * 1 2 3 29 29 H 1.09002 * 109.46976 * 59.99939 * 1 2 3 30 30 H 1.09000 * 109.47378 * 239.99784 * 2 1 3 31 31 H 1.09002 * 109.46976 * 120.00061 * 2 1 3 32 32 H 1.09004 * 109.46863 * 29.99727 * 4 3 2 33 33 H 1.08996 * 109.47191 * 149.99536 * 4 3 2 34 34 H 0.96999 * 119.99469 * 180.02562 * 8 7 5 35 35 H 1.07999 * 120.92863 * 359.97438 * 16 15 13 36 36 H 0.96696 * 114.00267 * 269.98261 * 21 20 19 37 37 H 1.09005 * 109.13662 * 216.60730 * 22 18 17 38 38 H 1.09000 * 109.12935 * 97.50626 * 22 18 17 39 39 H 1.08993 * 109.48731 * 294.87234 * 23 22 18 40 40 H 1.09009 * 109.48294 * 174.84636 * 23 22 18 41 41 H 1.08994 * 109.88788 * 55.43181 * 24 23 22 42 42 H 1.09007 * 109.88461 * 176.51661 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1665 2.1058 -1.2646 5 6 3.5525 1.8821 -1.8124 6 1 4.2531 1.2625 -1.2722 7 6 3.9265 2.4693 -3.0025 8 7 3.0735 3.2242 -3.6599 9 14 5.6442 2.1915 -3.6818 10 1 5.6416 0.9941 -4.5600 11 1 6.0645 3.3801 -4.4665 12 1 6.5924 1.9795 -2.5586 13 6 2.3314 1.9853 1.1634 14 8 2.2955 1.3568 2.2037 15 6 2.7177 3.4094 1.1748 16 6 3.7769 3.8662 0.3892 17 6 4.0974 5.2274 0.4404 18 6 3.3592 6.0870 1.2603 19 7 2.3655 5.6113 1.9900 20 6 2.0271 4.3335 1.9777 21 8 1.0001 3.9092 2.7483 22 6 3.6666 7.5599 1.3272 23 6 5.1051 7.8439 0.9048 24 6 5.3545 7.2503 -0.4879 25 6 5.2118 5.7468 -0.3701 26 8 5.9877 4.9972 -0.9241 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.4298 1.7414 -1.9806 33 1 2.0109 3.1709 -1.0934 34 1 3.3366 3.6370 -4.4974 35 1 4.3336 3.1881 -0.2405 36 1 1.2634 3.6303 3.6360 37 1 3.5188 7.9097 2.3490 38 1 2.9874 8.0970 0.6652 39 1 5.7905 7.3911 1.6210 40 1 5.2694 8.9212 0.8754 41 1 4.6197 7.6382 -1.1933 42 1 6.3606 7.5019 -0.8234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332669720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:26 Heat of formation + Delta-G solvation = -84.277120 kcal Electronic energy + Delta-G solvation = -27913.094939 eV Core-core repulsion = 24051.261683 eV Total energy + Delta-G solvation = -3861.833256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89330 -39.27973 -38.41811 -37.01703 -35.35150 -35.09856 -33.05233 -32.43377 -30.58180 -29.68014 -28.43519 -27.19191 -24.43627 -23.68505 -23.16930 -22.52812 -21.54261 -20.04984 -18.76227 -18.06338 -17.08571 -16.76350 -16.53391 -16.00282 -15.63952 -15.29601 -14.72727 -14.51560 -14.43893 -14.27265 -13.94861 -13.81326 -13.46911 -13.20337 -12.90571 -12.68630 -12.34625 -12.05301 -11.99660 -11.83143 -11.69390 -11.63268 -11.43938 -11.14728 -11.12649 -10.98446 -10.78582 -10.52509 -10.19992 -9.93527 -9.80784 -9.46799 -9.27360 -9.03177 -8.66378 -8.53072 -7.83093 -6.25740 -4.34818 0.61355 1.32701 2.51030 3.19752 3.25416 3.33463 3.39851 3.57888 3.67781 4.01650 4.21721 4.33627 4.47010 4.68368 4.83886 4.93392 5.04990 5.08336 5.17697 5.42433 5.47040 5.52296 5.58730 5.63986 5.71232 5.76016 5.78083 5.86290 5.94897 6.03275 6.22891 6.30392 6.35369 6.40926 6.61411 6.67064 6.77927 7.10173 7.42702 7.60889 7.67371 7.76151 7.94038 7.95583 8.19170 8.66967 8.84615 9.33976 10.79658 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.007775 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.653460 B = 3600.391907 C = 5965.681955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.585 5.585 4 C 0.234 3.766 5 C -0.549 4.549 6 H 0.064 0.936 7 C 0.076 3.924 8 N -0.882 5.882 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.574 3.426 14 O -0.565 6.565 15 C -0.200 4.200 16 C 0.050 3.950 17 C -0.240 4.240 18 C 0.210 3.790 19 N -0.524 5.524 20 C 0.379 3.621 21 O -0.474 6.474 22 C -0.075 4.075 23 C -0.111 4.111 24 C -0.164 4.164 25 C 0.404 3.596 26 O -0.436 6.436 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.186 0.814 36 H 0.407 0.593 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 7.741 8.002 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.314 5.314 4 C 0.114 3.886 5 C -0.587 4.587 6 H 0.082 0.918 7 C -0.129 4.129 8 N -0.519 5.519 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.361 3.639 14 O -0.447 6.447 15 C -0.206 4.206 16 C 0.026 3.974 17 C -0.243 4.243 18 C 0.071 3.929 19 N -0.244 5.244 20 C 0.200 3.800 21 O -0.282 6.282 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.202 4.202 25 C 0.279 3.721 26 O -0.310 6.310 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.203 0.797 36 H 0.266 0.734 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.014 7.729 8.108 11.202 hybrid contribution 1.246 -0.735 -0.781 1.644 sum 1.232 6.995 7.327 10.204 Atomic orbital electron populations 1.22112 0.96583 1.01342 1.02127 1.21300 0.93571 0.83217 1.02862 1.48164 1.61706 1.13722 1.07783 1.19513 0.97583 0.92248 0.79228 1.21434 0.98087 1.32073 1.07088 0.91763 1.24890 0.97614 0.94213 0.96146 1.69928 1.35085 1.30906 1.15939 0.86524 0.84304 0.77689 0.79440 1.20692 1.20851 1.19083 1.17681 0.76913 0.85443 0.83874 1.90670 1.55725 1.65808 1.32487 1.20978 1.00163 0.95798 1.03680 1.22907 0.91419 0.94896 0.88226 1.21131 1.03097 0.95210 1.04865 1.21351 0.87480 0.95697 0.88382 1.66956 1.16857 1.15261 1.25286 1.19106 0.84655 0.86578 0.89694 1.84574 1.30007 1.84029 1.29590 1.20442 0.97366 0.89311 1.04100 1.21504 0.95842 1.01816 0.95763 1.22336 1.04865 0.93864 0.99128 1.22354 0.81765 0.91194 0.76748 1.90591 1.40486 1.61839 1.38046 0.92218 0.92799 0.92456 0.90280 0.90560 0.94254 0.94744 0.92376 0.79738 0.73376 0.88820 0.88683 0.91004 0.89619 0.87783 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.11 2.11 6.21 -4.04 -0.03 2.08 16 3 N -0.58 -12.63 2.46 -176.28 -0.43 -13.06 16 4 C 0.23 5.62 4.73 -5.19 -0.02 5.59 16 5 C -0.55 -14.06 6.57 -34.44 -0.23 -14.28 16 6 H 0.06 1.68 7.78 -52.49 -0.41 1.27 16 7 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 8 N -0.88 -24.05 13.29 55.43 0.74 -23.32 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.57 12.50 6.82 -12.46 -0.08 12.42 16 14 O -0.57 -12.72 16.33 4.11 0.07 -12.65 16 15 C -0.20 -4.10 4.66 -104.73 -0.49 -4.59 16 16 C 0.05 1.05 7.45 -38.46 -0.29 0.76 16 17 C -0.24 -4.32 5.82 -104.99 -0.61 -4.93 16 18 C 0.21 3.27 6.70 -81.89 -0.55 2.72 16 19 N -0.52 -8.96 10.23 -8.81 -0.09 -9.06 16 20 C 0.38 7.03 7.75 -16.52 -0.13 6.90 16 21 O -0.47 -7.98 12.80 -18.56 -0.24 -8.22 16 22 C -0.07 -0.79 5.90 -28.13 -0.17 -0.95 16 23 C -0.11 -0.99 5.89 -26.72 -0.16 -1.15 16 24 C -0.16 -1.91 6.19 -27.27 -0.17 -2.08 16 25 C 0.40 6.94 6.88 -30.26 -0.21 6.73 16 26 O -0.44 -9.19 17.29 5.56 0.10 -9.10 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.08 1.40 7.23 -51.93 -0.38 1.03 16 32 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.03 0.88 6.12 -51.93 -0.32 0.57 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.19 4.35 4.95 -52.49 -0.26 4.09 16 36 H 0.41 5.05 9.06 45.56 0.41 5.46 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 40 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -31.87 353.42 -7.12 -38.99 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.73 Total: 5.90 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -2.84 Total: 8.89 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.21 Total: -45.43 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.07 Total: -29.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.87 -7.12 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332669720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.288 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds