Wall clock time and date at job start Tue Mar 31 2020 13:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47203 * 2 1 4 4 C 1.46498 * 120.00167 * 274.60586 * 3 2 1 5 5 C 1.50703 * 109.47370 * 270.00256 * 4 3 2 6 6 H 1.08002 * 119.99321 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00147 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00027 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99936 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47449 * 89.99518 * 9 7 5 11 11 H 1.48503 * 109.47164 * 210.00119 * 9 7 5 12 12 H 1.48510 * 109.47044 * 329.99477 * 9 7 5 13 13 C 1.34775 * 119.99878 * 94.60754 * 3 2 1 14 14 O 1.21588 * 120.00092 * 4.98414 * 13 3 2 15 15 C 1.47568 * 119.99891 * 184.98694 * 13 3 2 16 16 C 1.39551 * 120.67895 * 304.14332 * 15 13 3 17 17 C 1.39939 * 118.14195 * 179.97438 * 16 15 13 18 18 C 1.39862 * 119.88953 * 359.79194 * 17 16 15 19 19 N 1.32138 * 119.96404 * 0.35423 * 18 17 16 20 20 C 1.32194 * 122.36509 * 359.79435 * 19 18 17 21 21 O 1.35227 * 119.50148 * 179.97438 * 20 19 18 22 22 C 1.50614 * 121.28751 * 180.72296 * 18 17 16 23 23 C 1.52591 * 111.23283 * 337.06008 * 22 18 17 24 24 C 1.53434 * 109.42009 * 54.86468 * 23 22 18 25 25 C 1.47259 * 119.75931 * 179.77029 * 17 16 15 26 26 O 1.21280 * 121.16659 * 348.62880 * 25 17 16 27 27 H 1.09002 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47378 * 300.00216 * 1 2 3 29 29 H 1.09002 * 109.46976 * 59.99939 * 1 2 3 30 30 H 1.09000 * 109.47378 * 239.99784 * 2 1 3 31 31 H 1.09002 * 109.46976 * 120.00061 * 2 1 3 32 32 H 1.09004 * 109.46863 * 29.99727 * 4 3 2 33 33 H 1.08996 * 109.47191 * 149.99536 * 4 3 2 34 34 H 0.96999 * 119.99469 * 180.02562 * 8 7 5 35 35 H 1.07999 * 120.92863 * 359.97438 * 16 15 13 36 36 H 0.96696 * 114.00267 * 269.98261 * 21 20 19 37 37 H 1.09005 * 109.13662 * 216.60730 * 22 18 17 38 38 H 1.09000 * 109.12935 * 97.50626 * 22 18 17 39 39 H 1.08993 * 109.48731 * 294.87234 * 23 22 18 40 40 H 1.09009 * 109.48294 * 174.84636 * 23 22 18 41 41 H 1.08994 * 109.88788 * 55.43181 * 24 23 22 42 42 H 1.09007 * 109.88461 * 176.51661 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1665 2.1058 -1.2646 5 6 3.5525 1.8821 -1.8124 6 1 4.2531 1.2625 -1.2722 7 6 3.9265 2.4693 -3.0025 8 7 3.0735 3.2242 -3.6599 9 14 5.6442 2.1915 -3.6818 10 1 5.6416 0.9941 -4.5600 11 1 6.0645 3.3801 -4.4665 12 1 6.5924 1.9795 -2.5586 13 6 2.3314 1.9853 1.1634 14 8 2.2955 1.3568 2.2037 15 6 2.7177 3.4094 1.1748 16 6 3.7769 3.8662 0.3892 17 6 4.0974 5.2274 0.4404 18 6 3.3592 6.0870 1.2603 19 7 2.3655 5.6113 1.9900 20 6 2.0271 4.3335 1.9777 21 8 1.0001 3.9092 2.7483 22 6 3.6666 7.5599 1.3272 23 6 5.1051 7.8439 0.9048 24 6 5.3545 7.2503 -0.4879 25 6 5.2118 5.7468 -0.3701 26 8 5.9877 4.9972 -0.9241 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.4298 1.7414 -1.9806 33 1 2.0109 3.1709 -1.0934 34 1 3.3366 3.6370 -4.4974 35 1 4.3336 3.1881 -0.2405 36 1 1.2634 3.6303 3.6360 37 1 3.5188 7.9097 2.3490 38 1 2.9874 8.0970 0.6652 39 1 5.7905 7.3911 1.6210 40 1 5.2694 8.9212 0.8754 41 1 4.6197 7.6382 -1.1933 42 1 6.3606 7.5019 -0.8234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332669720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:25 Heat of formation + Delta-G solvation = -107.791021 kcal Electronic energy + Delta-G solvation = -27914.114578 eV Core-core repulsion = 24051.261683 eV Total energy + Delta-G solvation = -3862.852895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29863 -40.78737 -39.91148 -38.36694 -37.06378 -36.23138 -34.89019 -34.01361 -32.07671 -31.01309 -29.59122 -29.07611 -25.76466 -25.13653 -25.03742 -23.92145 -22.69169 -21.40171 -20.26529 -19.43173 -18.73279 -18.37884 -18.26278 -17.47455 -17.04843 -16.80145 -16.41075 -15.99357 -15.86918 -15.71799 -15.26859 -14.97843 -14.78492 -14.59585 -14.45035 -14.25834 -14.00801 -13.60417 -13.37516 -13.24333 -13.11405 -13.04097 -12.82210 -12.78156 -12.69303 -12.26683 -12.00475 -11.98918 -11.88734 -11.80413 -11.43064 -10.96863 -10.70652 -10.62209 -10.52963 -9.96940 -9.61223 -8.31314 -6.44124 -0.76858 -0.16735 1.15225 1.31362 1.36946 1.44240 1.58098 2.08335 2.28240 2.33123 2.56495 2.98460 3.01903 3.27766 3.46283 3.60023 3.82740 3.97436 4.06568 4.08928 4.16542 4.31917 4.34621 4.49280 4.53454 4.70001 4.71417 4.76978 4.87878 4.92204 4.96060 4.99217 5.04297 5.05980 5.19359 5.26614 5.28499 5.35667 5.54159 5.71240 5.91911 6.33405 6.37907 6.47055 6.60442 6.66728 7.08057 7.27632 8.73891 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.007775 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.653460 B = 3600.391907 C = 5965.681955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.106 3.894 3 N -0.590 5.590 4 C 0.255 3.745 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.043 3.957 8 N -0.906 5.906 9 Si 0.938 3.062 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.277 1.277 13 C 0.571 3.429 14 O -0.578 6.578 15 C -0.229 4.229 16 C 0.032 3.968 17 C -0.259 4.259 18 C 0.227 3.773 19 N -0.522 5.522 20 C 0.386 3.614 21 O -0.478 6.478 22 C -0.074 4.074 23 C -0.101 4.101 24 C -0.156 4.156 25 C 0.397 3.603 26 O -0.490 6.490 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.016 0.984 34 H 0.269 0.731 35 H 0.151 0.849 36 H 0.425 0.575 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 10.159 8.796 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.319 5.319 4 C 0.134 3.866 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.159 4.159 8 N -0.544 5.544 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.202 1.202 13 C 0.358 3.642 14 O -0.461 6.461 15 C -0.235 4.235 16 C 0.007 3.993 17 C -0.263 4.263 18 C 0.088 3.912 19 N -0.242 5.242 20 C 0.206 3.794 21 O -0.289 6.289 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.193 4.193 25 C 0.276 3.724 26 O -0.367 6.367 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.168 0.832 36 H 0.288 0.712 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.120 10.134 8.926 13.505 hybrid contribution 1.256 -1.475 -0.935 2.152 sum 1.137 8.659 7.990 11.837 Atomic orbital electron populations 1.22018 0.94364 1.03316 1.01290 1.21526 0.95407 0.81695 1.02969 1.48208 1.61970 1.14759 1.07004 1.19074 0.96279 0.91370 0.79840 1.21475 0.98552 1.31433 1.06864 0.93013 1.25379 0.99901 0.94165 0.96488 1.69983 1.36223 1.31804 1.16387 0.85838 0.81196 0.77962 0.78614 1.19343 1.20713 1.20245 1.17939 0.76472 0.86143 0.83627 1.90634 1.56440 1.66363 1.32633 1.20942 1.01437 0.95579 1.05574 1.22614 0.91794 0.96137 0.88745 1.21475 1.04315 0.94417 1.06043 1.22271 0.85396 0.97917 0.85631 1.67195 1.17343 1.14076 1.25583 1.19157 0.84228 0.86901 0.89137 1.84517 1.29539 1.84119 1.30737 1.20747 0.98966 0.85136 1.06285 1.21570 0.94504 1.04316 0.93496 1.22429 1.06364 0.88940 1.01596 1.23294 0.80217 0.93899 0.74969 1.90564 1.42184 1.63751 1.40161 0.88837 0.93604 0.93171 0.90125 0.90425 0.95491 0.96574 0.92193 0.83189 0.71211 0.86310 0.86390 0.90993 0.85027 0.86225 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 10.24 71.98 0.74 -4.07 16 2 C 0.11 3.99 6.21 86.38 0.54 4.53 16 3 N -0.59 -26.44 2.46 -829.88 -2.04 -28.48 16 4 C 0.26 12.78 4.73 85.63 0.41 13.18 16 5 C -0.55 -29.11 6.57 25.60 0.17 -28.94 16 6 H 0.05 2.84 7.78 -2.91 -0.02 2.82 16 7 C 0.04 2.34 5.46 84.65 0.46 2.80 16 8 N -0.91 -50.48 13.29 21.45 0.28 -50.20 16 9 Si 0.94 44.78 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 13 C 0.57 25.71 6.82 86.71 0.59 26.30 16 14 O -0.58 -26.58 16.33 -2.87 -0.05 -26.62 16 15 C -0.23 -9.71 4.66 -19.93 -0.09 -9.81 16 16 C 0.03 1.41 7.45 23.00 0.17 1.58 16 17 C -0.26 -9.41 5.82 -20.10 -0.12 -9.53 16 18 C 0.23 6.63 6.70 42.88 0.29 6.91 16 19 N -0.52 -17.05 10.23 -294.92 -3.02 -20.06 16 20 C 0.39 14.25 7.75 85.20 0.66 14.91 16 21 O -0.48 -15.82 12.80 -83.97 -1.07 -16.89 16 22 C -0.07 -1.23 5.90 29.69 0.18 -1.06 16 23 C -0.10 -1.32 5.89 30.60 0.18 -1.14 16 24 C -0.16 -3.15 6.19 30.24 0.19 -2.97 16 25 C 0.40 13.61 6.88 28.31 0.19 13.80 16 26 O -0.49 -21.38 17.29 -3.03 -0.05 -21.43 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 2.97 8.11 -2.39 -0.02 2.95 16 31 H 0.08 2.89 7.23 -2.39 -0.02 2.87 16 32 H 0.03 1.41 8.07 -2.38 -0.02 1.39 16 33 H 0.02 0.87 6.12 -2.39 -0.01 0.86 16 34 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.15 7.61 4.95 -2.91 -0.01 7.59 16 36 H 0.42 10.20 9.06 -74.06 -0.67 9.53 16 37 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 40 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -72.69 353.42 1.03 -71.67 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.40 Total: 18.70 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 4.55 Total: 26.52 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -4.77 Total: -98.74 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -1.17 Total: -64.95 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.69 1.03 -71.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332669720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.125 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds