Wall clock time and date at job start Tue Mar 31 2020 12:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 O 1.42997 * 109.44341 * 119.89809 * 2 1 3 5 5 C 1.35985 * 116.71878 * 166.44710 * 4 2 1 6 6 C 1.38390 * 120.67380 * 147.16331 * 5 4 2 7 7 C 1.38315 * 119.87554 * 180.12968 * 6 5 4 8 8 C 1.38281 * 120.25730 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.20277 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.80762 * 359.97438 * 9 8 7 11 11 N 1.40219 * 120.73405 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.50545 * 15.48398 * 11 10 9 13 13 C 1.50694 * 109.46953 * 90.00129 * 12 11 10 14 14 O 1.21277 * 120.00379 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99969 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00058 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.47140 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00113 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00111 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47056 * 90.00151 * 22 20 18 24 24 H 1.48511 * 109.46842 * 209.99588 * 22 20 18 25 25 H 1.48494 * 109.47468 * 329.99770 * 22 20 18 26 26 C 1.35086 * 118.98010 * 195.50233 * 11 10 9 27 27 O 1.21294 * 120.13484 * 181.64156 * 26 11 10 28 28 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47267 * 299.93742 * 1 2 3 30 30 H 1.09001 * 109.47220 * 59.93413 * 1 2 3 31 31 H 1.08005 * 120.06431 * 0.11158 * 6 5 4 32 32 H 1.07998 * 119.87275 * 179.71611 * 7 6 5 33 33 H 1.08003 * 119.90083 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.09514 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.46846 * 209.99825 * 12 11 10 36 36 H 1.08995 * 109.47292 * 329.99800 * 12 11 10 37 37 H 0.96999 * 119.99945 * 359.97438 * 15 13 12 38 38 H 1.09002 * 109.47406 * 299.99832 * 16 15 13 39 39 H 1.08995 * 109.47448 * 59.99953 * 16 15 13 40 40 H 1.08997 * 109.47084 * 299.99659 * 17 16 15 41 41 H 1.09002 * 109.47404 * 60.00319 * 17 16 15 42 42 H 0.97001 * 119.99633 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3742 -1.3621 2.3711 8 6 6.0053 -1.6990 1.1877 9 6 5.3007 -1.6947 -0.0022 10 6 3.9587 -1.3521 -0.0064 11 7 3.2255 -1.3418 -1.2016 12 6 3.7471 -2.0044 -2.3997 13 6 3.2803 -3.4370 -2.4248 14 8 2.5813 -3.8629 -1.5299 15 7 3.6397 -4.2451 -3.4419 16 6 3.1855 -5.6377 -3.4666 17 6 3.7302 -6.3296 -4.7178 18 6 3.2625 -7.7620 -4.7436 19 1 2.6394 -8.1410 -3.9471 20 6 3.6309 -8.5889 -5.7836 21 7 4.3901 -8.1275 -6.7533 22 14 3.0517 -10.3645 -5.8151 23 1 1.7555 -10.4497 -6.5348 24 1 4.0608 -11.2020 -6.5122 25 1 2.8785 -10.8536 -4.4238 26 6 2.0312 -0.7114 -1.2314 27 8 1.3658 -0.7150 -2.2456 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5129 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 3.5448 -0.7554 3.2992 32 1 5.9306 -1.3635 3.2967 33 1 7.0517 -1.9664 1.1927 34 1 5.7952 -1.9586 -0.9253 35 1 3.3830 -1.4881 -3.2879 36 1 4.8366 -1.9774 -2.3847 37 1 4.1984 -3.9044 -4.1579 38 1 3.5494 -6.1544 -2.5786 39 1 2.0960 -5.6643 -3.4815 40 1 3.3666 -5.8130 -5.6061 41 1 4.8198 -6.3031 -4.7024 42 1 4.6496 -8.7094 -7.4847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342656405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:38 Heat of formation + Delta-G solvation = -74.650887 kcal Electronic energy + Delta-G solvation = -26368.477392 eV Core-core repulsion = 22507.061561 eV Total energy + Delta-G solvation = -3861.415831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87441 -39.44066 -38.95220 -37.78904 -35.83837 -34.83327 -32.89467 -32.37670 -30.63084 -30.47731 -29.43941 -28.13742 -25.03927 -24.04614 -23.58097 -22.71754 -21.06845 -20.36760 -19.59637 -19.45457 -17.67840 -17.33528 -16.92941 -16.32480 -16.01648 -15.66779 -15.29537 -15.06245 -14.82653 -14.68368 -14.52428 -14.29628 -14.11666 -13.52067 -13.34957 -13.22389 -12.99019 -12.54975 -12.44409 -12.31807 -12.18280 -12.00237 -11.43977 -11.41757 -11.23541 -11.04741 -10.92224 -10.66280 -10.36357 -10.12422 -9.85544 -9.52214 -9.25733 -8.91261 -8.59684 -8.39449 -8.04509 -6.11302 -4.14150 0.85321 1.01636 2.05083 2.19896 2.85353 2.98970 3.28650 3.34554 3.38145 3.41454 3.66360 3.72226 4.34761 4.40457 4.45591 4.55925 4.68489 4.74923 4.89888 5.00743 5.01180 5.08609 5.17511 5.25884 5.35141 5.39347 5.47373 5.69986 5.83573 5.90567 6.07122 6.20542 6.29213 6.31193 6.39040 6.64563 6.69764 6.83461 7.10244 7.47311 7.52237 7.58470 7.86349 7.91143 8.24845 8.54019 8.91585 9.50812 11.00296 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.002819 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.021623 B = 9930.863178 C =10689.726237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.103 0.897 4 O -0.300 6.300 5 C 0.082 3.918 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.108 3.892 11 N -0.532 5.532 12 C 0.086 3.914 13 C 0.490 3.510 14 O -0.535 6.535 15 N -0.718 5.718 16 C 0.123 3.877 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.495 3.505 27 O -0.499 6.499 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.398 0.602 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 21.195 16.058 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.024 3.976 3 H 0.120 0.880 4 O -0.215 6.215 5 C 0.035 3.965 6 C -0.128 4.128 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.147 4.147 10 C 0.014 3.986 11 N -0.256 5.256 12 C -0.040 4.040 13 C 0.273 3.727 14 O -0.412 6.412 15 N -0.369 5.369 16 C 0.001 3.999 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C 0.283 3.717 27 O -0.372 6.372 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.232 0.768 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.714 20.783 16.031 26.303 hybrid contribution 0.207 -1.007 -0.815 1.312 sum 1.921 19.776 15.216 25.026 Atomic orbital electron populations 1.21727 0.88884 1.04769 1.03910 1.22626 0.98185 0.95827 0.80941 0.87996 1.86234 1.21608 1.74256 1.39415 1.18588 0.83388 1.01783 0.92693 1.20511 0.93581 1.02488 0.96231 1.20977 0.93727 1.00061 0.98569 1.20982 1.00283 0.99874 0.91604 1.20704 0.91310 1.02899 0.99750 1.18088 0.92546 1.03117 0.84864 1.45176 1.19448 1.51085 1.09917 1.21588 1.01134 0.92345 0.88909 1.20731 0.81439 0.87604 0.82918 1.90712 1.37448 1.75992 1.37018 1.46263 1.52818 1.13430 1.24395 1.21744 0.98978 0.77850 1.01336 1.19324 0.96753 0.95387 0.90946 1.21047 1.31982 0.95222 1.07843 0.92270 1.24994 0.94933 0.98937 0.95394 1.69953 1.36022 1.36277 1.11042 0.86504 0.78466 0.84246 0.78306 1.20529 1.21131 1.19714 1.21518 0.80053 0.79150 0.90998 1.90760 1.54231 1.59043 1.33210 0.90764 0.90196 0.88997 0.84435 0.84928 0.85009 0.84970 0.86068 0.86675 0.76815 0.92522 0.92569 0.95887 0.95885 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.14 37.16 0.34 -0.96 16 2 C 0.08 0.93 3.69 -27.84 -0.10 0.83 16 3 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 4 O -0.30 -3.75 10.09 -19.69 -0.20 -3.95 16 5 C 0.08 1.00 6.44 -39.09 -0.25 0.74 16 6 C -0.11 -1.04 10.00 -39.50 -0.39 -1.43 16 7 C -0.11 -0.92 10.04 -39.54 -0.40 -1.32 16 8 C -0.11 -0.93 10.04 -39.55 -0.40 -1.33 16 9 C -0.13 -1.31 9.36 -39.47 -0.37 -1.68 16 10 C 0.11 1.37 6.39 -83.49 -0.53 0.84 16 11 N -0.53 -7.37 2.21 -114.48 -0.25 -7.62 16 12 C 0.09 1.10 5.68 -5.19 -0.03 1.07 16 13 C 0.49 8.60 7.90 -10.99 -0.09 8.52 16 14 O -0.53 -11.78 16.43 5.56 0.09 -11.68 16 15 N -0.72 -12.58 5.56 -60.30 -0.33 -12.91 16 16 C 0.12 2.67 5.61 -4.04 -0.02 2.65 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.49 7.13 7.37 -10.80 -0.08 7.05 16 27 O -0.50 -8.38 15.83 5.54 0.09 -8.30 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.82 7.86 -51.93 -0.41 0.41 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.13 1.16 6.12 -52.49 -0.32 0.83 16 35 H 0.12 1.43 7.49 -51.93 -0.39 1.04 16 36 H 0.12 1.05 5.96 -51.93 -0.31 0.74 16 37 H 0.40 5.78 8.47 -40.82 -0.35 5.44 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -35.96 358.70 -7.91 -43.87 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.54 Total: 2.30 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.88 Total: 1.79 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.15 Total: -45.94 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.02 Total: -23.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.96 -7.91 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342656405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.781 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds