Wall clock time and date at job start Tue Mar 31 2020 12:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44416 * 2 1 4 4 O 1.42997 * 109.44341 * 119.89809 * 2 1 3 5 5 C 1.35985 * 116.71878 * 166.44710 * 4 2 1 6 6 C 1.38390 * 120.67380 * 147.16331 * 5 4 2 7 7 C 1.38315 * 119.87554 * 180.12968 * 6 5 4 8 8 C 1.38281 * 120.25730 * 359.97438 * 7 6 5 9 9 C 1.38285 * 120.20277 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.80762 * 359.97438 * 9 8 7 11 11 N 1.40219 * 120.73405 * 180.02562 * 10 9 8 12 12 C 1.46506 * 120.50545 * 15.48398 * 11 10 9 13 13 C 1.50694 * 109.46953 * 90.00129 * 12 11 10 14 14 O 1.21277 * 120.00379 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99969 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00058 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.47140 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00113 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00111 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47056 * 90.00151 * 22 20 18 24 24 H 1.48511 * 109.46842 * 209.99588 * 22 20 18 25 25 H 1.48494 * 109.47468 * 329.99770 * 22 20 18 26 26 C 1.35086 * 118.98010 * 195.50233 * 11 10 9 27 27 O 1.21294 * 120.13484 * 181.64156 * 26 11 10 28 28 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47267 * 299.93742 * 1 2 3 30 30 H 1.09001 * 109.47220 * 59.93413 * 1 2 3 31 31 H 1.08005 * 120.06431 * 0.11158 * 6 5 4 32 32 H 1.07998 * 119.87275 * 179.71611 * 7 6 5 33 33 H 1.08003 * 119.90083 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.09514 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.46846 * 209.99825 * 12 11 10 36 36 H 1.08995 * 109.47292 * 329.99800 * 12 11 10 37 37 H 0.96999 * 119.99945 * 359.97438 * 15 13 12 38 38 H 1.09002 * 109.47406 * 299.99832 * 16 15 13 39 39 H 1.08995 * 109.47448 * 59.99953 * 16 15 13 40 40 H 1.08997 * 109.47084 * 299.99659 * 17 16 15 41 41 H 1.09002 * 109.47404 * 60.00319 * 17 16 15 42 42 H 0.97001 * 119.99633 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6721 1.1690 5 6 3.3230 -1.0103 1.1861 6 6 4.0346 -1.0180 2.3731 7 6 5.3742 -1.3621 2.3711 8 6 6.0053 -1.6990 1.1877 9 6 5.3007 -1.6947 -0.0022 10 6 3.9587 -1.3521 -0.0064 11 7 3.2255 -1.3418 -1.2016 12 6 3.7471 -2.0044 -2.3997 13 6 3.2803 -3.4370 -2.4248 14 8 2.5813 -3.8629 -1.5299 15 7 3.6397 -4.2451 -3.4419 16 6 3.1855 -5.6377 -3.4666 17 6 3.7302 -6.3296 -4.7178 18 6 3.2625 -7.7620 -4.7436 19 1 2.6394 -8.1410 -3.9471 20 6 3.6309 -8.5889 -5.7836 21 7 4.3901 -8.1275 -6.7533 22 14 3.0517 -10.3645 -5.8151 23 1 1.7555 -10.4497 -6.5348 24 1 4.0608 -11.2020 -6.5122 25 1 2.8785 -10.8536 -4.4238 26 6 2.0312 -0.7114 -1.2314 27 8 1.3658 -0.7150 -2.2456 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5129 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 3.5448 -0.7554 3.2992 32 1 5.9306 -1.3635 3.2967 33 1 7.0517 -1.9664 1.1927 34 1 5.7952 -1.9586 -0.9253 35 1 3.3830 -1.4881 -3.2879 36 1 4.8366 -1.9774 -2.3847 37 1 4.1984 -3.9044 -4.1579 38 1 3.5494 -6.1544 -2.5786 39 1 2.0960 -5.6643 -3.4815 40 1 3.3666 -5.8130 -5.6061 41 1 4.8198 -6.3031 -4.7024 42 1 4.6496 -8.7094 -7.4847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342656405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:37 Heat of formation + Delta-G solvation = -99.395691 kcal Electronic energy + Delta-G solvation = -26369.550407 eV Core-core repulsion = 22507.061561 eV Total energy + Delta-G solvation = -3862.488846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.79904 -40.75341 -39.98505 -38.67835 -36.95564 -36.46414 -34.88964 -33.19047 -32.13019 -31.27721 -30.67312 -29.21903 -26.79138 -25.18129 -24.39102 -23.63580 -22.88301 -21.75129 -20.50017 -20.34498 -18.87073 -18.52726 -18.25493 -17.91015 -17.11367 -16.72899 -16.49969 -16.47247 -16.31914 -15.77545 -15.59100 -15.35332 -15.30657 -14.84993 -14.62303 -14.33416 -14.24269 -13.89038 -13.34774 -13.27549 -13.26300 -13.14169 -12.93608 -12.85019 -12.57004 -12.29251 -12.24739 -12.16997 -11.94165 -11.72608 -11.49584 -11.10656 -10.90921 -10.63689 -10.14228 -9.67653 -8.92266 -8.27241 -6.37857 0.04706 0.28907 1.02543 1.29896 1.39635 1.40074 1.45810 1.51609 2.17124 2.20232 2.41723 2.71559 2.85012 3.07442 3.53206 3.63110 3.69472 3.80792 3.88463 3.98387 4.06652 4.27253 4.36016 4.41109 4.42870 4.47706 4.58385 4.67461 4.75768 4.78002 4.93781 5.06712 5.18906 5.23329 5.26840 5.42685 5.52097 5.53387 5.70154 5.74164 5.76290 6.12238 6.25586 6.42797 6.55292 6.74540 7.12959 7.31467 8.84480 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017819 B = 0.002819 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.021623 B = 9930.863178 C =10689.726237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.133 0.867 4 O -0.313 6.313 5 C 0.056 3.944 6 C -0.113 4.113 7 C -0.105 4.105 8 C -0.109 4.109 9 C -0.134 4.134 10 C 0.075 3.925 11 N -0.537 5.537 12 C 0.092 3.908 13 C 0.489 3.511 14 O -0.583 6.583 15 N -0.710 5.710 16 C 0.143 3.857 17 C 0.025 3.975 18 C -0.550 4.550 19 H 0.055 0.945 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C 0.482 3.518 27 O -0.537 6.537 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.157 0.843 37 H 0.415 0.585 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.008 0.992 41 H 0.015 0.985 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 21.772 17.462 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.024 3.976 3 H 0.151 0.849 4 O -0.229 6.229 5 C 0.010 3.990 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.154 4.154 10 C -0.018 4.018 11 N -0.260 5.260 12 C -0.033 4.033 13 C 0.275 3.725 14 O -0.463 6.463 15 N -0.362 5.362 16 C 0.019 3.981 17 C -0.012 4.012 18 C -0.589 4.589 19 H 0.074 0.926 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.789 3.211 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C 0.272 3.728 27 O -0.413 6.413 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.173 0.827 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.175 0.825 37 H 0.251 0.749 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.027 0.973 41 H 0.033 0.967 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.247 21.388 17.448 27.793 hybrid contribution -0.178 -1.173 -1.173 1.668 sum 3.069 20.216 16.275 26.133 Atomic orbital electron populations 1.21746 0.88150 1.03480 1.05498 1.22830 0.98740 0.96695 0.79335 0.84935 1.86199 1.22271 1.74771 1.39621 1.19005 0.83447 1.02926 0.93623 1.20873 0.94288 1.02011 0.96035 1.21436 0.93198 0.97876 0.99845 1.21402 1.01574 0.98712 0.91012 1.21015 0.90646 1.02507 1.01264 1.18414 0.93556 1.05309 0.84542 1.45285 1.19563 1.50599 1.10591 1.21681 1.03455 0.88650 0.89548 1.21577 0.80146 0.89233 0.81568 1.90687 1.39550 1.77284 1.38780 1.46043 1.52969 1.11908 1.25288 1.21210 0.97578 0.80003 0.99316 1.19121 0.96011 0.94506 0.91611 1.21450 1.32370 0.96921 1.08117 0.92632 1.25847 0.94887 1.03352 0.94896 1.70046 1.36796 1.37933 1.11581 0.85457 0.78206 0.78916 0.78550 1.19886 1.20197 1.19154 1.22219 0.79971 0.79067 0.91585 1.90723 1.55246 1.60738 1.34642 0.93414 0.87431 0.88522 0.82657 0.81579 0.82156 0.83675 0.84889 0.82519 0.74877 0.93484 0.94411 0.97326 0.96693 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.14 71.98 0.66 -1.88 16 2 C 0.08 1.83 3.69 29.87 0.11 1.94 16 3 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 4 O -0.31 -7.76 10.09 -93.38 -0.94 -8.70 16 5 C 0.06 1.32 6.44 22.58 0.15 1.46 16 6 C -0.11 -1.93 10.00 22.32 0.22 -1.70 16 7 C -0.11 -1.35 10.04 22.30 0.22 -1.13 16 8 C -0.11 -1.52 10.04 22.29 0.22 -1.29 16 9 C -0.13 -2.52 9.36 22.34 0.21 -2.31 16 10 C 0.08 1.84 6.39 38.14 0.24 2.08 16 11 N -0.54 -14.75 2.21 -634.32 -1.40 -16.15 16 12 C 0.09 2.28 5.68 85.63 0.49 2.77 16 13 C 0.49 17.27 7.90 87.65 0.69 17.97 16 14 O -0.58 -26.40 16.43 -3.02 -0.05 -26.45 16 15 N -0.71 -24.98 5.56 -463.08 -2.57 -27.55 16 16 C 0.14 6.35 5.61 86.38 0.48 6.84 16 17 C 0.02 1.27 5.09 29.85 0.15 1.42 16 18 C -0.55 -31.21 9.11 25.60 0.23 -30.97 16 19 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 20 C 0.01 0.52 5.46 84.66 0.46 0.98 16 21 N -0.92 -54.17 13.29 21.45 0.28 -53.88 16 22 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C 0.48 14.13 7.37 87.63 0.65 14.78 16 27 O -0.54 -18.64 15.83 -3.07 -0.05 -18.69 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.10 1.75 7.86 -2.39 -0.02 1.73 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.15 2.17 6.12 -2.91 -0.02 2.15 16 35 H 0.13 3.03 7.49 -2.39 -0.02 3.02 16 36 H 0.16 2.50 5.96 -2.39 -0.01 2.49 16 37 H 0.41 11.82 8.47 -92.71 -0.79 11.04 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -80.04 358.70 2.76 -77.28 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.27 Total: 17.16 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.19 Total: 10.95 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -3.69 Total: -97.58 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -1.04 Total: -53.83 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -80.04 2.76 -77.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342656405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.121 kcal (2) G-P(sol) polarization free energy of solvation -80.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds