Wall clock time and date at job start Tue Mar 31 2020 12:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.46917 * 179.97438 * 16 14 12 18 18 N 1.46505 * 109.46917 * 180.02562 * 17 16 14 19 19 C 1.39465 * 126.25616 * 269.71652 * 18 17 16 20 20 C 1.38614 * 133.35803 * 0.72025 * 19 18 17 21 21 C 1.38127 * 119.82217 * 179.63812 * 20 19 18 22 22 C 1.38409 * 120.18859 * 359.70492 * 21 20 19 23 23 C 1.38123 * 120.30773 * 0.02710 * 22 21 20 24 24 C 1.38603 * 119.91963 * 359.97438 * 23 22 21 25 25 O 1.35564 * 132.99613 * 180.02562 * 24 23 22 26 26 C 1.34236 * 109.17808 * 180.02562 * 25 24 23 27 27 O 1.21595 * 125.27656 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 36 36 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 37 37 H 1.08993 * 109.47612 * 300.00333 * 17 16 14 38 38 H 1.09001 * 109.47336 * 60.00638 * 17 16 14 39 39 H 1.07997 * 120.08964 * 359.37106 * 20 19 18 40 40 H 1.07998 * 119.90558 * 179.73038 * 21 20 19 41 41 H 1.07996 * 119.84785 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.03533 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 6 4.1459 0.2155 4.1464 18 7 4.6343 -0.4751 5.3425 19 6 3.9940 -0.5342 6.5801 20 6 2.7951 -0.0273 7.0564 21 6 2.4194 -0.2661 8.3640 22 6 3.2335 -1.0144 9.1964 23 6 4.4269 -1.5274 8.7270 24 6 4.8123 -1.2931 7.4164 25 8 5.8990 -1.6585 6.6929 26 6 5.7871 -1.1651 5.4495 27 8 6.6000 -1.3169 4.5580 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 2.4472 -1.0881 3.9073 36 1 3.9006 -1.6025 3.0176 37 1 4.9938 0.5574 3.5529 38 1 3.5409 1.0724 4.4428 39 1 2.1584 0.5565 6.4082 40 1 1.4877 0.1320 8.7378 41 1 2.9346 -1.1974 10.2179 42 1 5.0586 -2.1112 9.3802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349326987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:22 Heat of formation + Delta-G solvation = -45.836424 kcal Electronic energy + Delta-G solvation = -26361.615756 eV Core-core repulsion = 22501.449414 eV Total energy + Delta-G solvation = -3860.166342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.48385 -39.33021 -38.84427 -37.65691 -36.35794 -35.40117 -33.00443 -31.91107 -31.02483 -29.75102 -29.07770 -26.25825 -25.43890 -25.14599 -23.73294 -23.05101 -21.80286 -20.72896 -18.89730 -18.46088 -17.99895 -17.49480 -16.73998 -16.67025 -16.25298 -15.48936 -15.43604 -15.00322 -14.84355 -14.51290 -14.34908 -14.27786 -13.64893 -13.53607 -13.38977 -12.81836 -12.67799 -12.61232 -12.32514 -12.19301 -11.66146 -11.62698 -11.57515 -11.32780 -11.10417 -10.99800 -10.90163 -10.80997 -10.73420 -10.30005 -10.19697 -9.24870 -9.19768 -9.07907 -8.46697 -8.42734 -7.67795 -6.10264 -4.18285 0.69919 0.78148 1.84267 2.29408 2.59575 3.18085 3.22672 3.25564 3.32844 3.36785 3.84889 4.00334 4.37448 4.39221 4.49384 4.72424 4.79471 4.80396 4.94609 4.99497 5.08689 5.21255 5.33860 5.38044 5.53360 5.66547 5.70752 5.79893 5.89641 5.97244 6.00802 6.04667 6.21006 6.24670 6.70468 6.75507 6.95270 6.99582 7.34307 7.45463 7.47258 7.67685 7.96514 8.14880 8.44321 8.77101 8.94562 9.48454 10.95073 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022944 B = 0.002863 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.080569 B = 9777.520221 C =10418.399569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.085 3.915 14 C 0.510 3.490 15 O -0.554 6.554 16 C -0.160 4.160 17 C 0.147 3.853 18 N -0.544 5.544 19 C 0.076 3.924 20 C -0.100 4.100 21 C -0.098 4.098 22 C -0.112 4.112 23 C -0.080 4.080 24 C 0.031 3.969 25 O -0.239 6.239 26 C 0.633 3.367 27 O -0.480 6.480 28 H 0.011 0.989 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -4.655 24.133 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.059 4.059 14 C 0.295 3.705 15 O -0.434 6.434 16 C -0.201 4.201 17 C 0.028 3.972 18 N -0.275 5.275 19 C -0.023 4.023 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.099 4.099 24 C -0.016 4.016 25 O -0.145 6.145 26 C 0.388 3.612 27 O -0.362 6.362 28 H 0.030 0.970 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.096 -4.130 23.300 23.688 hybrid contribution 0.269 -0.677 -1.084 1.306 sum 1.364 -4.807 22.215 22.770 Atomic orbital electron populations 1.22100 0.98158 0.99392 1.00901 1.18975 0.90880 0.94544 0.79859 0.91771 1.21318 1.31899 1.13040 0.90284 0.92270 1.24888 0.94915 0.94950 0.98993 1.69871 1.36399 1.22541 1.23820 0.86485 0.79251 0.79298 0.82332 1.20602 1.21055 1.19887 1.48242 1.48559 1.11710 1.23492 1.21587 1.01837 0.83158 0.99303 1.19981 0.79396 0.86995 0.84083 1.90672 1.58570 1.17004 1.77117 1.22057 1.01047 1.00402 0.96563 1.21462 1.00284 0.93578 0.81914 1.46088 1.19770 1.50341 1.11316 1.18644 0.96587 1.01414 0.85626 1.20220 0.93659 1.01564 0.96684 1.21037 1.00142 0.98132 0.92354 1.20946 0.93325 0.98361 1.00512 1.20030 0.97636 1.01665 0.90552 1.19047 0.86829 1.01371 0.94338 1.85005 1.40243 1.66554 1.22709 1.18572 0.82448 0.78760 0.81441 1.91195 1.45046 1.62704 1.37279 0.96967 0.88715 0.95082 0.92649 0.93113 0.93029 0.90660 0.88876 0.88614 0.87384 0.87844 0.84461 0.84320 0.84182 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.59 -12.21 2.75 -175.26 -0.48 -12.69 16 13 C 0.09 1.39 9.48 59.85 0.57 1.96 16 14 C 0.51 9.98 7.67 -10.98 -0.08 9.89 16 15 O -0.55 -12.84 15.31 5.56 0.09 -12.75 16 16 C -0.16 -2.27 4.58 -27.88 -0.13 -2.40 16 17 C 0.15 1.98 5.32 -4.04 -0.02 1.96 16 18 N -0.54 -6.97 2.81 -119.01 -0.33 -7.31 16 19 C 0.08 0.80 6.84 -83.79 -0.57 0.23 16 20 C -0.10 -0.81 10.04 -39.48 -0.40 -1.20 16 21 C -0.10 -0.57 10.04 -39.56 -0.40 -0.97 16 22 C -0.11 -0.61 10.03 -39.56 -0.40 -1.00 16 23 C -0.08 -0.58 10.06 -39.49 -0.40 -0.97 16 24 C 0.03 0.33 7.35 -38.99 -0.29 0.04 16 25 O -0.24 -3.16 10.72 -22.02 -0.24 -3.40 16 26 C 0.63 9.45 9.07 54.06 0.49 9.94 16 27 O -0.48 -8.71 17.81 -19.00 -0.34 -9.04 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.65 6.44 -51.93 -0.33 0.32 16 34 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 35 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 36 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 37 H 0.11 1.64 8.02 -51.93 -0.42 1.22 16 38 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 42 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -33.20 355.92 -7.59 -40.79 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.40 Total: -0.55 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.86 Total: 7.83 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.19 Total: -44.36 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.49 Total: -25.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.20 -7.59 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349326987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.045 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds