Wall clock time and date at job start Tue Mar 31 2020 12:51:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3
5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1
6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1
7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2
9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4
10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4
11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4
12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3
13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1
14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1
15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2
16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2
17 17 C 1.52996 * 109.46917 * 179.97438 * 16 14 12
18 18 N 1.46505 * 109.46917 * 180.02562 * 17 16 14
19 19 C 1.39465 * 126.25616 * 269.71652 * 18 17 16
20 20 C 1.38614 * 133.35803 * 0.72025 * 19 18 17
21 21 C 1.38127 * 119.82217 * 179.63812 * 20 19 18
22 22 C 1.38409 * 120.18859 * 359.70492 * 21 20 19
23 23 C 1.38123 * 120.30773 * 0.02710 * 22 21 20
24 24 C 1.38603 * 119.91963 * 359.97438 * 23 22 21
25 25 O 1.35564 * 132.99613 * 180.02562 * 24 23 22
26 26 C 1.34236 * 109.17808 * 180.02562 * 25 24 23
27 27 O 1.21595 * 125.27656 * 179.97438 * 26 25 24
28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3
29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3
30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4
32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2
33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2
34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2
35 35 H 1.09004 * 109.47134 * 299.99971 * 16 14 12
36 36 H 1.09001 * 109.46597 * 60.00090 * 16 14 12
37 37 H 1.08993 * 109.47612 * 300.00333 * 17 16 14
38 38 H 1.09001 * 109.47336 * 60.00638 * 17 16 14
39 39 H 1.07997 * 120.08964 * 359.37106 * 20 19 18
40 40 H 1.07998 * 119.90558 * 179.73038 * 21 20 19
41 41 H 1.07996 * 119.84785 * 179.97438 * 22 21 20
42 42 H 1.08004 * 120.03533 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1315
6 6 1.6992 -0.2394 -2.4828
7 7 0.9435 0.8301 -2.6034
8 14 2.3223 -1.1196 -4.0080
9 1 1.3446 -2.1616 -4.4124
10 1 2.4871 -0.1403 -5.1120
11 1 3.6307 -1.7566 -3.7120
12 7 2.0184 -0.6907 1.1961
13 6 1.6645 -2.0932 1.4280
14 6 2.7933 -0.0357 2.0833
15 8 3.0859 1.1256 1.8916
16 6 3.2953 -0.7459 3.3140
17 6 4.1459 0.2155 4.1464
18 7 4.6343 -0.4751 5.3425
19 6 3.9940 -0.5342 6.5801
20 6 2.7951 -0.0273 7.0564
21 6 2.4194 -0.2661 8.3640
22 6 3.2335 -1.0144 9.1964
23 6 4.4269 -1.5274 8.7270
24 6 4.8123 -1.2931 7.4164
25 8 5.8990 -1.6585 6.6929
26 6 5.7871 -1.1651 5.4495
27 8 6.6000 -1.3169 4.5580
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 0.7093 1.1618 -3.4844
32 1 2.4157 -2.7377 0.9716
33 1 1.6239 -2.2853 2.5002
34 1 0.6905 -2.3003 0.9847
35 1 2.4472 -1.0881 3.9073
36 1 3.9006 -1.6025 3.0176
37 1 4.9938 0.5574 3.5529
38 1 3.5409 1.0724 4.4428
39 1 2.1584 0.5565 6.4082
40 1 1.4877 0.1320 8.7378
41 1 2.9346 -1.1974 10.2179
42 1 5.0586 -2.1112 9.3802
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000349326987.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:51:21
Heat of formation + Delta-G solvation = -65.967235 kcal
Electronic energy + Delta-G solvation = -26362.488693 eV
Core-core repulsion = 22501.449414 eV
Total energy + Delta-G solvation = -3861.039280 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 318.141 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-44.38176 -40.89792 -39.69301 -38.62512 -37.49743 -37.00929 -34.87972 -33.16175
-31.65462 -31.22585 -30.11466 -27.68675 -27.31493 -26.55233 -24.46348 -23.82171
-23.15511 -22.06972 -20.01405 -19.63160 -18.95956 -18.54744 -18.48153 -17.81880
-17.65883 -17.15431 -16.74766 -16.27016 -15.87611 -15.70070 -15.27173 -14.97188
-14.90340 -14.69822 -14.51017 -14.46509 -14.07623 -13.80806 -13.48996 -13.30025
-13.19828 -12.99539 -12.90578 -12.73416 -12.63571 -12.47898 -12.27795 -12.19837
-12.16139 -11.98539 -11.75290 -11.19572 -10.76388 -10.51742 -9.79730 -9.38580
-9.22891 -8.17277 -6.33470 0.09440 0.16074 0.84611 1.22838 1.38423
1.40698 1.50032 1.69607 1.76737 2.29617 2.46595 2.63539 3.10697
3.29650 3.43242 3.56706 3.69983 3.94645 4.04505 4.20705 4.23519
4.28224 4.41890 4.45131 4.58092 4.65832 4.67845 4.76857 4.82276
4.89276 5.00897 5.02320 5.05509 5.22326 5.36424 5.44816 5.47088
5.59251 5.64478 5.64688 6.01368 6.10719 6.14658 6.41071 6.73953
6.76091 7.25715 7.42236 8.86795
Molecular weight = 318.14amu
Principal moments of inertia in cm(-1)
A = 0.022944 B = 0.002863 C = 0.002687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.080569 B = 9777.520221 C =10418.399569
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.261 3.739
3 H 0.012 0.988
4 C -0.542 4.542
5 H 0.056 0.944
6 C 0.017 3.983
7 N -0.915 5.915
8 Si 0.961 3.039
9 H -0.266 1.266
10 H -0.284 1.284
11 H -0.275 1.275
12 N -0.599 5.599
13 C 0.082 3.918
14 C 0.503 3.497
15 O -0.598 6.598
16 C -0.139 4.139
17 C 0.154 3.846
18 N -0.538 5.538
19 C 0.050 3.950
20 C -0.105 4.105
21 C -0.087 4.087
22 C -0.096 4.096
23 C -0.079 4.079
24 C 0.000 4.000
25 O -0.248 6.248
26 C 0.626 3.374
27 O -0.530 6.530
28 H 0.025 0.975
29 H 0.067 0.933
30 H 0.048 0.952
31 H 0.265 0.735
32 H 0.050 0.950
33 H 0.095 0.905
34 H 0.075 0.925
35 H 0.129 0.871
36 H 0.097 0.903
37 H 0.081 0.919
38 H 0.117 0.883
39 H 0.147 0.853
40 H 0.173 0.827
41 H 0.179 0.821
42 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.370 -6.218 27.109 27.847
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.159 3.841
3 H 0.030 0.970
4 C -0.580 4.580
5 H 0.074 0.926
6 C -0.182 4.182
7 N -0.554 5.554
8 Si 0.787 3.213
9 H -0.191 1.191
10 H -0.210 1.210
11 H -0.200 1.200
12 N -0.329 5.329
13 C -0.061 4.061
14 C 0.291 3.709
15 O -0.481 6.481
16 C -0.179 4.179
17 C 0.033 3.967
18 N -0.269 5.269
19 C -0.047 4.047
20 C -0.125 4.125
21 C -0.105 4.105
22 C -0.114 4.114
23 C -0.098 4.098
24 C -0.045 4.045
25 O -0.153 6.153
26 C 0.382 3.618
27 O -0.416 6.416
28 H 0.044 0.956
29 H 0.086 0.914
30 H 0.067 0.933
31 H 0.074 0.926
32 H 0.068 0.932
33 H 0.114 0.886
34 H 0.093 0.907
35 H 0.147 0.853
36 H 0.116 0.884
37 H 0.100 0.900
38 H 0.135 0.865
39 H 0.165 0.835
40 H 0.190 0.810
41 H 0.197 0.803
42 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -0.663 -5.728 26.347 26.970
hybrid contribution 0.723 -0.150 -1.797 1.943
sum 0.060 -5.877 24.550 25.244
Atomic orbital electron populations
1.21872 0.96775 1.00213 1.00220 1.18560 0.91868 0.92237 0.81420
0.96970 1.21587 1.31974 1.13049 0.91418 0.92574 1.25682 0.95077
0.95617 1.01865 1.70003 1.37242 1.23678 1.24461 0.85506 0.78753
0.78376 0.78692 1.19106 1.20990 1.20004 1.48238 1.48813 1.13398
1.22401 1.21827 1.01631 0.80330 1.02277 1.20825 0.78366 0.86623
0.85093 1.90648 1.59897 1.19268 1.78280 1.21911 1.02146 0.99630
0.94259 1.21276 0.99325 0.93915 0.82149 1.45872 1.19406 1.49662
1.11935 1.18940 0.97968 1.03289 0.84515 1.20533 0.92682 1.01337
0.97955 1.21517 1.01069 0.96767 0.91144 1.21472 0.91753 0.96150
1.02015 1.20485 0.98562 1.01472 0.89258 1.19601 0.86366 1.02928
0.95620 1.84936 1.41665 1.66525 1.22207 1.18648 0.82591 0.78965
0.81594 1.91137 1.46703 1.64753 1.39014 0.95554 0.91419 0.93349
0.92568 0.93184 0.88627 0.90656 0.85257 0.88435 0.90019 0.86477
0.83532 0.80988 0.80327 0.82275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.21 8.95 71.98 0.64 -5.56 16
2 C 0.26 13.45 2.64 44.25 0.12 13.57 16
3 H 0.01 0.76 6.90 -2.39 -0.02 0.74 16
4 C -0.54 -29.76 8.37 25.60 0.21 -29.54 16
5 H 0.06 3.04 7.65 -2.91 -0.02 3.02 16
6 C 0.02 0.96 5.30 84.66 0.45 1.41 16
7 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16
8 Si 0.96 43.68 29.54 68.60 2.03 45.71 16
9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16
10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16
12 N -0.60 -24.75 2.75 -826.79 -2.28 -27.02 16
13 C 0.08 2.51 9.48 127.77 1.21 3.72 16
14 C 0.50 19.86 7.67 87.66 0.67 20.53 16
15 O -0.60 -28.91 15.31 -3.04 -0.05 -28.96 16
16 C -0.14 -3.82 4.58 29.85 0.14 -3.68 16
17 C 0.15 4.18 5.32 86.38 0.46 4.64 16
18 N -0.54 -13.80 2.81 -761.03 -2.14 -15.94 16
19 C 0.05 0.98 6.84 38.31 0.26 1.24 16
20 C -0.10 -1.35 10.04 22.33 0.22 -1.12 16
21 C -0.09 -0.59 10.04 22.28 0.22 -0.36 16
22 C -0.10 -0.55 10.03 22.28 0.22 -0.32 16
23 C -0.08 -0.88 10.06 22.33 0.22 -0.66 16
24 C 0.00 0.01 7.35 22.65 0.17 0.18 16
25 O -0.25 -6.67 10.72 8.40 0.09 -6.58 16
26 C 0.63 19.47 9.07 129.79 1.18 20.65 16
27 O -0.53 -20.46 17.81 19.20 0.34 -20.12 16
28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16
29 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16
30 H 0.05 2.05 6.66 -2.39 -0.02 2.03 16
31 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16
32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16
34 H 0.07 2.31 6.43 -2.39 -0.02 2.30 16
35 H 0.13 2.62 7.40 -2.39 -0.02 2.60 16
36 H 0.10 2.72 8.11 -2.39 -0.02 2.70 16
37 H 0.08 2.66 8.02 -2.39 -0.02 2.64 16
38 H 0.12 2.83 8.10 -2.39 -0.02 2.81 16
39 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16
40 H 0.17 0.09 8.06 -2.91 -0.02 0.06 16
41 H 0.18 -0.27 8.06 -2.91 -0.02 -0.30 16
42 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16
Total: -1.00 -77.78 355.92 5.69 -72.09
By element:
Atomic # 1 Polarization: 7.54 SS G_CDS: 1.04 Total: 8.58 kcal
Atomic # 6 Polarization: 18.28 SS G_CDS: 6.41 Total: 24.69 kcal
Atomic # 7 Polarization: -91.24 SS G_CDS: -4.17 Total: -95.41 kcal
Atomic # 8 Polarization: -56.04 SS G_CDS: 0.39 Total: -55.66 kcal
Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal
Total: -77.78 5.69 -72.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000349326987.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.125 kcal
(2) G-P(sol) polarization free energy of solvation -77.785 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.093 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.967 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds