Wall clock time and date at job start Tue Mar 31 2020 12:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.46715 * 330.00553 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.46917 * 179.97438 * 16 14 12 18 18 N 1.46505 * 109.46917 * 180.02562 * 17 16 14 19 19 C 1.39465 * 126.25616 * 269.71652 * 18 17 16 20 20 C 1.38614 * 133.35803 * 0.72025 * 19 18 17 21 21 C 1.38127 * 119.82217 * 179.63812 * 20 19 18 22 22 C 1.38409 * 120.18859 * 359.70492 * 21 20 19 23 23 C 1.38123 * 120.30773 * 0.02710 * 22 21 20 24 24 C 1.38603 * 119.91963 * 359.97438 * 23 22 21 25 25 O 1.35564 * 132.99613 * 180.02562 * 24 23 22 26 26 C 1.34236 * 109.17808 * 180.02562 * 25 24 23 27 27 O 1.21595 * 125.27656 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 36 36 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 37 37 H 1.08993 * 109.47612 * 300.00333 * 17 16 14 38 38 H 1.09001 * 109.47336 * 60.00638 * 17 16 14 39 39 H 1.07997 * 120.08964 * 359.37106 * 20 19 18 40 40 H 1.07998 * 119.90558 * 179.73038 * 21 20 19 41 41 H 1.07996 * 119.84785 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.03533 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4871 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 6 4.1459 0.2155 4.1464 18 7 4.6343 -0.4751 5.3425 19 6 3.9940 -0.5342 6.5801 20 6 2.7951 -0.0273 7.0564 21 6 2.4194 -0.2661 8.3640 22 6 3.2335 -1.0144 9.1964 23 6 4.4269 -1.5274 8.7270 24 6 4.8123 -1.2931 7.4164 25 8 5.8990 -1.6585 6.6929 26 6 5.7871 -1.1651 5.4495 27 8 6.6000 -1.3169 4.5580 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 2.4472 -1.0881 3.9073 36 1 3.9006 -1.6025 3.0176 37 1 4.9938 0.5574 3.5529 38 1 3.5409 1.0724 4.4428 39 1 2.1584 0.5565 6.4082 40 1 1.4877 0.1320 8.7378 41 1 2.9346 -1.1974 10.2179 42 1 5.0586 -2.1112 9.3802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349326987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:21 Heat of formation + Delta-G solvation = -65.967235 kcal Electronic energy + Delta-G solvation = -26362.488693 eV Core-core repulsion = 22501.449414 eV Total energy + Delta-G solvation = -3861.039280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.38176 -40.89792 -39.69301 -38.62512 -37.49743 -37.00929 -34.87972 -33.16175 -31.65462 -31.22585 -30.11466 -27.68675 -27.31493 -26.55233 -24.46348 -23.82171 -23.15511 -22.06972 -20.01405 -19.63160 -18.95956 -18.54744 -18.48153 -17.81880 -17.65883 -17.15431 -16.74766 -16.27016 -15.87611 -15.70070 -15.27173 -14.97188 -14.90340 -14.69822 -14.51017 -14.46509 -14.07623 -13.80806 -13.48996 -13.30025 -13.19828 -12.99539 -12.90578 -12.73416 -12.63571 -12.47898 -12.27795 -12.19837 -12.16139 -11.98539 -11.75290 -11.19572 -10.76388 -10.51742 -9.79730 -9.38580 -9.22891 -8.17277 -6.33470 0.09440 0.16074 0.84611 1.22838 1.38423 1.40698 1.50032 1.69607 1.76737 2.29617 2.46595 2.63539 3.10697 3.29650 3.43242 3.56706 3.69983 3.94645 4.04505 4.20705 4.23519 4.28224 4.41890 4.45131 4.58092 4.65832 4.67845 4.76857 4.82276 4.89276 5.00897 5.02320 5.05509 5.22326 5.36424 5.44816 5.47088 5.59251 5.64478 5.64688 6.01368 6.10719 6.14658 6.41071 6.73953 6.76091 7.25715 7.42236 8.86795 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022944 B = 0.002863 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.080569 B = 9777.520221 C =10418.399569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.012 0.988 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.599 5.599 13 C 0.082 3.918 14 C 0.503 3.497 15 O -0.598 6.598 16 C -0.139 4.139 17 C 0.154 3.846 18 N -0.538 5.538 19 C 0.050 3.950 20 C -0.105 4.105 21 C -0.087 4.087 22 C -0.096 4.096 23 C -0.079 4.079 24 C 0.000 4.000 25 O -0.248 6.248 26 C 0.626 3.374 27 O -0.530 6.530 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.179 0.821 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -6.218 27.109 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.030 0.970 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.329 5.329 13 C -0.061 4.061 14 C 0.291 3.709 15 O -0.481 6.481 16 C -0.179 4.179 17 C 0.033 3.967 18 N -0.269 5.269 19 C -0.047 4.047 20 C -0.125 4.125 21 C -0.105 4.105 22 C -0.114 4.114 23 C -0.098 4.098 24 C -0.045 4.045 25 O -0.153 6.153 26 C 0.382 3.618 27 O -0.416 6.416 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.135 0.865 39 H 0.165 0.835 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.663 -5.728 26.347 26.970 hybrid contribution 0.723 -0.150 -1.797 1.943 sum 0.060 -5.877 24.550 25.244 Atomic orbital electron populations 1.21872 0.96775 1.00213 1.00220 1.18560 0.91868 0.92237 0.81420 0.96970 1.21587 1.31974 1.13049 0.91418 0.92574 1.25682 0.95077 0.95617 1.01865 1.70003 1.37242 1.23678 1.24461 0.85506 0.78753 0.78376 0.78692 1.19106 1.20990 1.20004 1.48238 1.48813 1.13398 1.22401 1.21827 1.01631 0.80330 1.02277 1.20825 0.78366 0.86623 0.85093 1.90648 1.59897 1.19268 1.78280 1.21911 1.02146 0.99630 0.94259 1.21276 0.99325 0.93915 0.82149 1.45872 1.19406 1.49662 1.11935 1.18940 0.97968 1.03289 0.84515 1.20533 0.92682 1.01337 0.97955 1.21517 1.01069 0.96767 0.91144 1.21472 0.91753 0.96150 1.02015 1.20485 0.98562 1.01472 0.89258 1.19601 0.86366 1.02928 0.95620 1.84936 1.41665 1.66525 1.22207 1.18648 0.82591 0.78965 0.81594 1.91137 1.46703 1.64753 1.39014 0.95554 0.91419 0.93349 0.92568 0.93184 0.88627 0.90656 0.85257 0.88435 0.90019 0.86477 0.83532 0.80988 0.80327 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 8.95 71.98 0.64 -5.56 16 2 C 0.26 13.45 2.64 44.25 0.12 13.57 16 3 H 0.01 0.76 6.90 -2.39 -0.02 0.74 16 4 C -0.54 -29.76 8.37 25.60 0.21 -29.54 16 5 H 0.06 3.04 7.65 -2.91 -0.02 3.02 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.60 -24.75 2.75 -826.79 -2.28 -27.02 16 13 C 0.08 2.51 9.48 127.77 1.21 3.72 16 14 C 0.50 19.86 7.67 87.66 0.67 20.53 16 15 O -0.60 -28.91 15.31 -3.04 -0.05 -28.96 16 16 C -0.14 -3.82 4.58 29.85 0.14 -3.68 16 17 C 0.15 4.18 5.32 86.38 0.46 4.64 16 18 N -0.54 -13.80 2.81 -761.03 -2.14 -15.94 16 19 C 0.05 0.98 6.84 38.31 0.26 1.24 16 20 C -0.10 -1.35 10.04 22.33 0.22 -1.12 16 21 C -0.09 -0.59 10.04 22.28 0.22 -0.36 16 22 C -0.10 -0.55 10.03 22.28 0.22 -0.32 16 23 C -0.08 -0.88 10.06 22.33 0.22 -0.66 16 24 C 0.00 0.01 7.35 22.65 0.17 0.18 16 25 O -0.25 -6.67 10.72 8.40 0.09 -6.58 16 26 C 0.63 19.47 9.07 129.79 1.18 20.65 16 27 O -0.53 -20.46 17.81 19.20 0.34 -20.12 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 30 H 0.05 2.05 6.66 -2.39 -0.02 2.03 16 31 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16 34 H 0.07 2.31 6.43 -2.39 -0.02 2.30 16 35 H 0.13 2.62 7.40 -2.39 -0.02 2.60 16 36 H 0.10 2.72 8.11 -2.39 -0.02 2.70 16 37 H 0.08 2.66 8.02 -2.39 -0.02 2.64 16 38 H 0.12 2.83 8.10 -2.39 -0.02 2.81 16 39 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.17 0.09 8.06 -2.91 -0.02 0.06 16 41 H 0.18 -0.27 8.06 -2.91 -0.02 -0.30 16 42 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -77.78 355.92 5.69 -72.09 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.04 Total: 8.58 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 6.41 Total: 24.69 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.17 Total: -95.41 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: 0.39 Total: -55.66 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -77.78 5.69 -72.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349326987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.125 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds