Wall clock time and date at job start Tue Mar 31 2020 12:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 C 1.39466 * 126.25070 * 269.71487 * 18 17 16 20 20 C 1.38613 * 133.36133 * 0.72419 * 19 18 17 21 21 C 1.38128 * 119.82100 * 179.63350 * 20 19 18 22 22 C 1.38408 * 120.18931 * 359.70980 * 21 20 19 23 23 C 1.38117 * 120.30921 * 0.02562 * 22 21 20 24 24 C 1.38611 * 119.92124 * 0.02562 * 23 22 21 25 25 O 1.35560 * 133.00027 * 179.97438 * 24 23 22 26 26 C 1.34229 * 109.17920 * 180.02562 * 25 24 23 27 27 O 1.21599 * 125.27305 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 36 36 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 37 37 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 38 38 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 39 39 H 1.07999 * 120.08677 * 359.36073 * 20 19 18 40 40 H 1.08009 * 119.90712 * 179.72503 * 21 20 19 41 41 H 1.07999 * 119.84707 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.04058 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 6 5.8302 -1.1839 -5.4551 20 6 6.8572 -1.4651 -4.5676 21 6 7.9371 -2.2192 -4.9833 22 6 7.9930 -2.6989 -6.2804 23 6 6.9708 -2.4273 -7.1687 24 6 5.8834 -1.6705 -6.7610 25 8 4.7594 -1.2519 -7.3926 26 6 4.0144 -0.5338 -6.5375 27 8 2.9451 -0.0180 -6.8001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 3.9016 -1.6021 -3.0168 36 1 2.4483 -1.0887 -3.9070 37 1 3.5409 1.0721 -4.4431 38 1 4.9938 0.5582 -3.5525 39 1 6.8151 -1.0918 -3.5550 40 1 8.7402 -2.4354 -4.2942 41 1 8.8402 -3.2877 -6.5998 42 1 7.0186 -2.8042 -8.1797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349326989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:25 Heat of formation + Delta-G solvation = -46.880326 kcal Electronic energy + Delta-G solvation = -26378.559929 eV Core-core repulsion = 22518.348320 eV Total energy + Delta-G solvation = -3860.211609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.48321 -39.32661 -38.83768 -37.65681 -36.35553 -35.39400 -33.01193 -31.91054 -31.00994 -29.74570 -29.07480 -26.23068 -25.41887 -25.17177 -23.72505 -23.04365 -21.79873 -20.73611 -18.88848 -18.47026 -17.98940 -17.49598 -16.73744 -16.66609 -16.28656 -15.49015 -15.39412 -14.98197 -14.90215 -14.51065 -14.31446 -14.27140 -13.64136 -13.47756 -13.44798 -12.80305 -12.66356 -12.51431 -12.32418 -12.19969 -11.68889 -11.62344 -11.53694 -11.36957 -11.10355 -11.02035 -10.88924 -10.85414 -10.71889 -10.31291 -10.21501 -9.25777 -9.18841 -9.07374 -8.48075 -8.42374 -7.67993 -6.11939 -4.20490 0.71418 0.79435 1.84375 2.28672 2.59728 3.19698 3.21947 3.23800 3.30320 3.32621 3.84958 4.01471 4.35013 4.39442 4.51172 4.74003 4.79878 4.81773 4.96309 5.00557 5.09103 5.19374 5.35975 5.39131 5.54021 5.67976 5.71089 5.80792 5.90213 5.99035 5.99258 6.05253 6.22236 6.30536 6.71779 6.79859 6.95420 7.02091 7.34054 7.46123 7.47558 7.66361 7.95967 8.14277 8.43982 8.75415 8.93880 9.46006 10.93395 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.003025 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.338973 B = 9255.055148 C =10199.925902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.510 3.490 15 O -0.554 6.554 16 C -0.159 4.159 17 C 0.147 3.853 18 N -0.544 5.544 19 C 0.075 3.925 20 C -0.100 4.100 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.080 4.080 24 C 0.031 3.969 25 O -0.239 6.239 26 C 0.633 3.367 27 O -0.482 6.482 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.178 -9.197 -16.221 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.320 5.320 13 C -0.062 4.062 14 C 0.295 3.705 15 O -0.434 6.434 16 C -0.201 4.201 17 C 0.028 3.972 18 N -0.275 5.275 19 C -0.023 4.023 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.099 4.099 24 C -0.016 4.016 25 O -0.145 6.145 26 C 0.388 3.612 27 O -0.365 6.365 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.447 -8.149 -16.291 22.062 hybrid contribution 0.063 -0.602 0.952 1.129 sum 12.510 -8.751 -15.339 21.642 Atomic orbital electron populations 1.22090 0.98118 0.99450 1.00885 1.18971 0.90952 0.94543 0.79775 0.91799 1.21300 1.32021 1.13059 0.90281 0.92242 1.24902 0.94922 0.94950 0.98994 1.69882 1.36226 1.22496 1.23835 0.86485 0.79159 0.79306 0.82374 1.20593 1.19932 1.21062 1.48243 1.48572 1.11702 1.23447 1.21631 0.98884 0.83190 1.02490 1.19986 0.79579 0.87016 0.83874 1.90672 1.58806 1.16940 1.76950 1.22052 1.01453 1.00023 0.96531 1.21462 0.99956 0.94156 0.81672 1.46083 1.18458 1.49992 1.12947 1.18640 0.89905 0.98142 0.95617 1.20243 0.92034 1.00415 0.99347 1.21049 0.97459 0.96760 0.96359 1.20949 0.98256 1.00763 0.93139 1.20026 0.90426 0.98091 1.01369 1.19044 0.89637 1.02988 0.89952 1.84996 1.29651 1.61170 1.38686 1.18562 0.84013 0.79599 0.79010 1.91183 1.17507 1.49166 1.78627 0.95149 0.88782 0.96957 0.92615 0.93713 0.92893 0.89898 0.88761 0.88736 0.87462 0.87772 0.84383 0.84285 0.84173 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.47 2.64 -69.09 -0.18 6.29 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.94 7.99 -34.44 -0.28 -14.22 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.59 -12.21 2.75 -175.26 -0.48 -12.69 16 13 C 0.08 1.34 9.24 59.85 0.55 1.89 16 14 C 0.51 9.99 7.67 -10.99 -0.08 9.91 16 15 O -0.55 -12.85 15.31 5.56 0.09 -12.76 16 16 C -0.16 -2.27 4.58 -27.89 -0.13 -2.40 16 17 C 0.15 1.98 5.33 -4.04 -0.02 1.96 16 18 N -0.54 -6.98 2.81 -119.01 -0.33 -7.32 16 19 C 0.08 0.82 6.84 -83.79 -0.57 0.24 16 20 C -0.10 -0.85 10.04 -39.48 -0.40 -1.24 16 21 C -0.10 -0.61 10.04 -39.56 -0.40 -1.01 16 22 C -0.11 -0.63 10.03 -39.56 -0.40 -1.03 16 23 C -0.08 -0.59 10.06 -39.49 -0.40 -0.99 16 24 C 0.03 0.33 7.35 -38.99 -0.29 0.04 16 25 O -0.24 -3.15 10.72 -21.99 -0.24 -3.38 16 26 C 0.63 9.35 9.07 54.05 0.49 9.84 16 27 O -0.48 -8.56 17.80 -19.00 -0.34 -8.90 16 28 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.70 6.44 -51.92 -0.33 0.36 16 34 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 35 H 0.09 1.16 7.40 -51.93 -0.38 0.78 16 36 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 37 H 0.11 1.59 8.02 -51.93 -0.42 1.18 16 38 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 41 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -32.69 356.60 -7.65 -40.34 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.47 Total: 0.17 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.86 Total: 7.75 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.19 Total: -44.17 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.49 Total: -25.05 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.69 -7.65 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349326989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.542 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds