Wall clock time and date at job start Tue Mar 31 2020 12:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 C 1.39466 * 126.25070 * 269.71487 * 18 17 16 20 20 C 1.38613 * 133.36133 * 0.72419 * 19 18 17 21 21 C 1.38128 * 119.82100 * 179.63350 * 20 19 18 22 22 C 1.38408 * 120.18931 * 359.70980 * 21 20 19 23 23 C 1.38117 * 120.30921 * 0.02562 * 22 21 20 24 24 C 1.38611 * 119.92124 * 0.02562 * 23 22 21 25 25 O 1.35560 * 133.00027 * 179.97438 * 24 23 22 26 26 C 1.34229 * 109.17920 * 180.02562 * 25 24 23 27 27 O 1.21599 * 125.27305 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 36 36 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 37 37 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 38 38 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 39 39 H 1.07999 * 120.08677 * 359.36073 * 20 19 18 40 40 H 1.08009 * 119.90712 * 179.72503 * 21 20 19 41 41 H 1.07999 * 119.84707 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.04058 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 6 5.8302 -1.1839 -5.4551 20 6 6.8572 -1.4651 -4.5676 21 6 7.9371 -2.2192 -4.9833 22 6 7.9930 -2.6989 -6.2804 23 6 6.9708 -2.4273 -7.1687 24 6 5.8834 -1.6705 -6.7610 25 8 4.7594 -1.2519 -7.3926 26 6 4.0144 -0.5338 -6.5375 27 8 2.9451 -0.0180 -6.8001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 3.9016 -1.6021 -3.0168 36 1 2.4483 -1.0887 -3.9070 37 1 3.5409 1.0721 -4.4431 38 1 4.9938 0.5582 -3.5525 39 1 6.8151 -1.0918 -3.5550 40 1 8.7402 -2.4354 -4.2942 41 1 8.8402 -3.2877 -6.5998 42 1 7.0186 -2.8042 -8.1797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349326989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:24 Heat of formation + Delta-G solvation = -66.357559 kcal Electronic energy + Delta-G solvation = -26379.404525 eV Core-core repulsion = 22518.348320 eV Total energy + Delta-G solvation = -3861.056205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.38510 -40.89686 -39.69247 -38.62597 -37.49370 -37.00652 -34.86368 -33.16148 -31.66206 -31.23503 -30.12197 -27.65074 -27.32730 -26.55121 -24.47026 -23.82431 -23.16611 -22.07834 -20.01947 -19.63574 -18.96401 -18.53593 -18.47011 -17.80563 -17.68321 -17.15390 -16.72441 -16.24047 -15.88800 -15.70483 -15.30081 -14.93573 -14.85534 -14.72676 -14.53243 -14.40720 -14.05400 -13.75521 -13.57739 -13.28117 -13.19794 -13.00570 -12.86498 -12.73301 -12.65736 -12.49708 -12.28316 -12.21785 -12.12378 -11.98896 -11.75236 -11.20516 -10.76015 -10.50456 -9.80533 -9.38263 -9.23469 -8.14903 -6.31786 0.08694 0.15282 0.84588 1.22844 1.42604 1.43859 1.53835 1.70099 1.75927 2.29849 2.48500 2.62667 3.13514 3.29085 3.43057 3.56451 3.70124 3.94499 4.04034 4.20586 4.23336 4.27372 4.41188 4.45888 4.58315 4.65631 4.71092 4.73634 4.81784 4.87458 5.00243 5.01439 5.05024 5.21291 5.35602 5.46040 5.46448 5.54864 5.63601 5.65436 6.00210 6.10201 6.14809 6.40789 6.75471 6.76320 7.26385 7.43357 8.89776 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.003025 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.338973 B = 9255.055148 C =10199.925902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.267 1.267 11 H -0.287 1.287 12 N -0.598 5.598 13 C 0.078 3.922 14 C 0.503 3.497 15 O -0.599 6.599 16 C -0.139 4.139 17 C 0.153 3.847 18 N -0.538 5.538 19 C 0.049 3.951 20 C -0.106 4.106 21 C -0.087 4.087 22 C -0.095 4.095 23 C -0.078 4.078 24 C 0.002 3.998 25 O -0.247 6.247 26 C 0.627 3.373 27 O -0.528 6.528 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.144 0.856 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.021 -12.507 -16.562 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.160 3.840 3 H 0.030 0.970 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.213 1.213 12 N -0.328 5.328 13 C -0.064 4.064 14 C 0.291 3.709 15 O -0.481 6.481 16 C -0.179 4.179 17 C 0.033 3.967 18 N -0.269 5.269 19 C -0.047 4.047 20 C -0.127 4.127 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.097 4.097 24 C -0.044 4.044 25 O -0.152 6.152 26 C 0.383 3.617 27 O -0.414 6.414 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.197 0.803 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 15.336 -11.525 -16.658 25.406 hybrid contribution -0.649 0.377 1.009 1.257 sum 14.687 -11.148 -15.649 24.184 Atomic orbital electron populations 1.21895 0.97471 1.00052 0.99846 1.18551 0.91413 0.92396 0.81682 0.97042 1.21573 1.31986 1.13136 0.90937 0.91679 1.25772 0.95061 0.95602 1.02153 1.70034 1.37362 1.23945 1.24454 0.85422 0.78959 0.78149 0.78285 1.19474 1.19098 1.21320 1.48239 1.48743 1.13442 1.22408 1.21866 1.01151 0.80565 1.02808 1.20827 0.78624 0.86647 0.84817 1.90648 1.60226 1.19154 1.78110 1.21902 1.02056 1.00184 0.93773 1.21271 0.99961 0.93496 0.81944 1.45874 1.19197 1.49948 1.11882 1.18923 0.89927 0.99313 0.96581 1.20518 0.92017 1.00794 0.99346 1.21508 0.97015 0.94867 0.97198 1.21467 0.98248 0.99325 0.92323 1.20488 0.89427 0.96880 1.02885 1.19580 0.89940 1.04790 0.90052 1.84932 1.30636 1.60977 1.38684 1.18621 0.83839 0.79641 0.79580 1.91130 1.19484 1.51219 1.79611 0.93527 0.91333 0.96447 0.92660 0.92106 0.89130 0.90840 0.85806 0.87888 0.89624 0.86916 0.83860 0.81161 0.80298 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 8.97 71.98 0.65 -5.90 16 2 C 0.26 13.50 2.64 44.24 0.12 13.62 16 3 H 0.01 0.72 6.90 -2.39 -0.02 0.70 16 4 C -0.54 -28.60 7.99 25.60 0.20 -28.39 16 5 H 0.07 3.31 7.33 -2.91 -0.02 3.28 16 6 C 0.01 0.74 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 N -0.60 -24.75 2.75 -826.80 -2.28 -27.03 16 13 C 0.08 2.40 9.24 127.77 1.18 3.58 16 14 C 0.50 19.90 7.67 87.66 0.67 20.57 16 15 O -0.60 -29.01 15.31 -3.03 -0.05 -29.06 16 16 C -0.14 -3.81 4.58 29.85 0.14 -3.68 16 17 C 0.15 4.19 5.33 86.38 0.46 4.65 16 18 N -0.54 -13.82 2.81 -761.04 -2.14 -15.95 16 19 C 0.05 1.00 6.84 38.31 0.26 1.27 16 20 C -0.11 -1.51 10.04 22.33 0.22 -1.28 16 21 C -0.09 -0.70 10.04 22.28 0.22 -0.47 16 22 C -0.10 -0.61 10.03 22.28 0.22 -0.39 16 23 C -0.08 -0.89 10.06 22.33 0.22 -0.67 16 24 C 0.00 0.04 7.35 22.65 0.17 0.21 16 25 O -0.25 -6.55 10.72 8.51 0.09 -6.46 16 26 C 0.63 19.13 9.07 129.79 1.18 20.30 16 27 O -0.53 -19.76 17.80 19.19 0.34 -19.41 16 28 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 29 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 2.08 6.44 -2.38 -0.02 2.06 16 34 H 0.07 2.41 7.02 -2.39 -0.02 2.39 16 35 H 0.12 2.69 7.40 -2.39 -0.02 2.68 16 36 H 0.10 2.73 8.11 -2.39 -0.02 2.71 16 37 H 0.09 2.71 8.02 -2.39 -0.02 2.69 16 38 H 0.11 2.85 8.10 -2.39 -0.02 2.83 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 42 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -76.00 356.60 5.65 -70.35 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.04 Total: 11.34 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 6.37 Total: 24.60 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -4.17 Total: -95.46 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: 0.39 Total: -54.93 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -76.00 5.65 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349326989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.996 kcal (2) G-P(sol) polarization free energy of solvation -76.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds