Wall clock time and date at job start Tue Mar 31 2020 13:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21292 * 120.00101 * 2 1 4 4 C 1.46864 * 120.00062 * 180.02562 * 2 1 3 5 5 C 1.40053 * 120.09689 * 174.90213 * 4 2 1 6 6 C 1.36596 * 119.90126 * 180.29860 * 5 4 2 7 7 C 1.39254 * 120.10051 * 359.47349 * 6 5 4 8 8 N 1.39156 * 119.90904 * 180.23586 * 7 6 5 9 9 C 1.34775 * 119.99712 * 35.41372 * 8 7 6 10 10 O 1.21352 * 120.00511 * 355.43267 * 9 8 7 11 11 C 1.49366 * 119.99620 * 175.42942 * 9 8 7 12 12 O 1.21362 * 120.00315 * 0.02562 * 11 9 8 13 13 N 1.34784 * 119.99873 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99928 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46912 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47036 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99896 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00364 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99743 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00429 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47236 * 119.99892 * 21 19 17 24 24 H 1.48503 * 109.47451 * 240.00212 * 21 19 17 25 25 C 1.39267 * 120.18850 * 0.50487 * 7 6 5 26 26 C 1.36605 * 120.09374 * 359.77564 * 25 7 6 27 27 H 1.09005 * 109.47419 * 185.01419 * 1 2 3 28 28 H 1.09004 * 109.46931 * 305.01176 * 1 2 3 29 29 H 1.09002 * 109.47549 * 65.01117 * 1 2 3 30 30 H 1.08006 * 120.04666 * 0.02562 * 5 4 2 31 31 H 1.08007 * 119.94572 * 179.71950 * 6 5 4 32 32 H 0.96997 * 119.99909 * 215.41817 * 8 7 6 33 33 H 0.96992 * 119.99758 * 359.97438 * 13 11 9 34 34 H 1.08997 * 109.47245 * 300.00353 * 14 13 11 35 35 H 1.09003 * 109.47214 * 59.99601 * 14 13 11 36 36 H 1.08999 * 109.47218 * 299.99828 * 15 14 13 37 37 H 1.08997 * 109.46906 * 60.00271 * 15 14 13 38 38 H 1.08991 * 109.47256 * 300.00303 * 16 15 14 39 39 H 1.08997 * 109.47001 * 60.00467 * 16 15 14 40 40 H 0.96996 * 120.00036 * 179.97438 * 20 19 17 41 41 H 1.07996 * 119.94819 * 179.74698 * 25 7 6 42 42 H 1.07996 * 120.04316 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 3.6377 -1.2766 -0.1082 6 6 4.3162 -2.4621 -0.1145 7 6 3.6225 -3.6644 -0.0030 8 7 4.3181 -4.8696 -0.0049 9 6 5.5302 -4.9489 0.5790 10 8 6.0514 -3.9516 1.0332 11 6 6.2319 -6.2645 0.6672 12 8 5.7109 -7.2619 0.2127 13 7 7.4439 -6.3440 1.2517 14 6 8.1324 -7.6342 1.3377 15 6 9.4787 -7.4479 2.0404 16 6 10.1975 -8.7956 2.1308 17 6 11.5232 -8.6123 2.8235 18 1 11.8233 -7.6325 3.1647 19 6 12.3536 -9.6951 3.0207 20 7 11.9889 -10.8880 2.6039 21 14 13.9972 -9.4678 3.8786 22 1 14.1702 -8.0395 4.2466 23 1 14.0345 -10.3027 5.1062 24 1 15.0934 -9.8805 2.9658 25 6 2.2340 -3.6644 0.1047 26 6 1.5471 -2.4836 0.1061 27 1 -0.3634 -1.0238 0.0898 28 1 -0.3633 0.5896 0.8417 29 1 -0.3634 0.4341 -0.9315 30 1 4.1769 -0.3444 -0.1906 31 1 5.3927 -2.4667 -0.2021 32 1 3.9306 -5.6525 -0.4265 33 1 7.8604 -5.5468 1.6146 34 1 7.5202 -8.3356 1.9045 35 1 8.2979 -8.0254 0.3338 36 1 10.0906 -6.7467 1.4731 37 1 9.3134 -7.0567 3.0442 38 1 9.5853 -9.4965 2.6981 39 1 10.3626 -9.1873 1.1271 40 1 12.5732 -11.6497 2.7423 41 1 1.6996 -4.5992 0.1869 42 1 0.4703 -2.4845 0.1893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352274770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:49 Heat of formation + Delta-G solvation = -87.410741 kcal Electronic energy + Delta-G solvation = -24379.293052 eV Core-core repulsion = 20517.323913 eV Total energy + Delta-G solvation = -3861.969140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45380 -40.26882 -39.20420 -38.15759 -36.01380 -35.16536 -33.40580 -32.18562 -31.33775 -31.22962 -29.38052 -27.36457 -25.51717 -23.78322 -23.19669 -22.47838 -20.92565 -20.46718 -20.18556 -18.90213 -18.02054 -17.18656 -16.52278 -16.46192 -16.39367 -15.85013 -15.41980 -15.31157 -15.11479 -14.78522 -14.49258 -14.42980 -14.07763 -14.03221 -13.71715 -13.25759 -13.19266 -12.67671 -12.56104 -12.36875 -11.97121 -11.89974 -11.88862 -11.63568 -10.96551 -10.86659 -10.82426 -10.61781 -10.21388 -9.97343 -9.94002 -9.56306 -9.46289 -9.17160 -9.13696 -8.71566 -8.42180 -6.06748 -4.09878 0.07108 0.94923 1.14059 1.91931 2.08427 2.94731 3.27609 3.33047 3.35489 3.38353 3.40398 3.64670 4.19934 4.26071 4.40189 4.41303 4.55839 4.79143 4.86601 4.93845 5.02009 5.06480 5.29520 5.37774 5.48634 5.54293 5.59864 5.62268 5.74747 5.85630 5.98881 5.99394 6.10652 6.39419 6.46050 6.54057 6.67336 6.88157 7.11343 7.15124 7.42877 7.56878 7.67645 7.82974 7.91539 8.32240 8.96771 9.54900 11.04509 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035197 B = 0.001719 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.332137 B =16284.616118 C =16930.095231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.397 3.603 3 O -0.462 6.462 4 C -0.193 4.193 5 C -0.038 4.038 6 C -0.135 4.135 7 C 0.179 3.821 8 N -0.649 5.649 9 C 0.510 3.490 10 O -0.493 6.493 11 C 0.503 3.497 12 O -0.521 6.521 13 N -0.687 5.687 14 C 0.113 3.887 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.155 4.155 26 C -0.053 4.053 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.427 0.573 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.137 0.863 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.111 17.115 -7.185 31.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.275 3.725 3 O -0.338 6.338 4 C -0.194 4.194 5 C -0.057 4.057 6 C -0.155 4.155 7 C 0.084 3.916 8 N -0.295 5.295 9 C 0.293 3.707 10 O -0.366 6.366 11 C 0.282 3.718 12 O -0.398 6.398 13 N -0.338 5.338 14 C -0.009 4.009 15 C -0.161 4.161 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.175 4.175 26 C -0.071 4.071 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.265 0.735 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.154 0.846 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.648 17.395 -7.154 31.005 hybrid contribution 0.903 -0.217 0.466 1.039 sum -23.745 17.178 -6.688 30.060 Atomic orbital electron populations 1.22246 0.93826 1.04817 1.05007 1.22395 0.91646 0.87594 0.70823 1.90560 1.72092 1.34388 1.36801 1.20548 0.94669 0.94896 1.09333 1.21096 0.92910 0.98536 0.93158 1.21104 1.01929 0.90640 1.01845 1.18077 0.91274 0.85626 0.96643 1.43123 1.18479 1.12568 1.55355 1.20627 0.81699 0.90279 0.78118 1.90782 1.64440 1.36930 1.44422 1.19689 0.83148 0.88162 0.80777 1.90792 1.65696 1.36552 1.46740 1.46084 1.17364 1.13888 1.56500 1.21906 0.94350 0.82509 1.02111 1.21941 0.92536 1.02576 0.99068 1.19039 0.94771 0.89923 0.97636 1.21233 1.02565 0.94435 1.37934 0.92497 1.25023 0.98401 0.95257 0.95745 1.69968 1.37268 0.99274 1.46732 0.86515 0.83804 0.78230 0.79323 1.19725 1.20982 1.20976 1.20709 0.92133 0.99533 1.05147 1.21053 1.00122 0.90784 0.95169 0.89761 0.88857 0.88640 0.84434 0.83529 0.73467 0.75169 0.90877 0.90870 0.92350 0.92359 0.96158 0.96154 0.92948 0.84563 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.79 10.19 36.00 0.37 -0.42 16 2 C 0.40 3.14 7.21 -30.82 -0.22 2.92 16 3 O -0.46 -5.39 17.09 5.55 0.09 -5.29 16 4 C -0.19 -1.52 5.87 -105.05 -0.62 -2.14 16 5 C -0.04 -0.35 9.54 -39.49 -0.38 -0.73 16 6 C -0.14 -1.33 8.62 -39.80 -0.34 -1.67 16 7 C 0.18 1.59 6.29 -83.78 -0.53 1.06 16 8 N -0.65 -5.88 5.29 -10.28 -0.05 -5.94 16 9 C 0.51 5.93 7.72 -11.63 -0.09 5.84 16 10 O -0.49 -6.51 13.90 5.50 0.08 -6.43 16 11 C 0.50 6.71 7.89 -11.62 -0.09 6.62 16 12 O -0.52 -7.97 16.48 5.49 0.09 -7.88 16 13 N -0.69 -9.36 5.55 -60.76 -0.34 -9.70 16 14 C 0.11 1.81 5.67 -4.04 -0.02 1.79 16 15 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.15 -1.00 9.90 -39.79 -0.39 -1.39 16 26 C -0.05 -0.30 9.39 -39.49 -0.37 -0.67 16 27 H 0.08 0.14 5.61 -51.93 -0.29 -0.15 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 1.26 7.65 -52.48 -0.40 0.86 16 31 H 0.15 1.58 6.23 -52.48 -0.33 1.26 16 32 H 0.43 3.10 8.29 -40.82 -0.34 2.76 16 33 H 0.41 5.07 7.94 -40.82 -0.32 4.75 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.14 0.35 5.93 -52.49 -0.31 0.04 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -33.41 366.45 -7.61 -41.02 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.34 Total: 1.94 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.38 Total: -3.92 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.34 Total: -41.17 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.26 Total: -19.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.41 -7.61 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352274770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.394 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds