Wall clock time and date at job start Tue Mar 31 2020 13:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21292 * 120.00101 * 2 1 4 4 C 1.46864 * 120.00062 * 180.02562 * 2 1 3 5 5 C 1.40053 * 120.09689 * 174.90213 * 4 2 1 6 6 C 1.36596 * 119.90126 * 180.29860 * 5 4 2 7 7 C 1.39254 * 120.10051 * 359.47349 * 6 5 4 8 8 N 1.39156 * 119.90904 * 180.23586 * 7 6 5 9 9 C 1.34775 * 119.99712 * 35.41372 * 8 7 6 10 10 O 1.21352 * 120.00511 * 355.43267 * 9 8 7 11 11 C 1.49366 * 119.99620 * 175.42942 * 9 8 7 12 12 O 1.21362 * 120.00315 * 0.02562 * 11 9 8 13 13 N 1.34784 * 119.99873 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99928 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46912 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47036 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99896 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00364 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99743 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00429 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47236 * 119.99892 * 21 19 17 24 24 H 1.48503 * 109.47451 * 240.00212 * 21 19 17 25 25 C 1.39267 * 120.18850 * 0.50487 * 7 6 5 26 26 C 1.36605 * 120.09374 * 359.77564 * 25 7 6 27 27 H 1.09005 * 109.47419 * 185.01419 * 1 2 3 28 28 H 1.09004 * 109.46931 * 305.01176 * 1 2 3 29 29 H 1.09002 * 109.47549 * 65.01117 * 1 2 3 30 30 H 1.08006 * 120.04666 * 0.02562 * 5 4 2 31 31 H 1.08007 * 119.94572 * 179.71950 * 6 5 4 32 32 H 0.96997 * 119.99909 * 215.41817 * 8 7 6 33 33 H 0.96992 * 119.99758 * 359.97438 * 13 11 9 34 34 H 1.08997 * 109.47245 * 300.00353 * 14 13 11 35 35 H 1.09003 * 109.47214 * 59.99601 * 14 13 11 36 36 H 1.08999 * 109.47218 * 299.99828 * 15 14 13 37 37 H 1.08997 * 109.46906 * 60.00271 * 15 14 13 38 38 H 1.08991 * 109.47256 * 300.00303 * 16 15 14 39 39 H 1.08997 * 109.47001 * 60.00467 * 16 15 14 40 40 H 0.96996 * 120.00036 * 179.97438 * 20 19 17 41 41 H 1.07996 * 119.94819 * 179.74698 * 25 7 6 42 42 H 1.07996 * 120.04316 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 3.6377 -1.2766 -0.1082 6 6 4.3162 -2.4621 -0.1145 7 6 3.6225 -3.6644 -0.0030 8 7 4.3181 -4.8696 -0.0049 9 6 5.5302 -4.9489 0.5790 10 8 6.0514 -3.9516 1.0332 11 6 6.2319 -6.2645 0.6672 12 8 5.7109 -7.2619 0.2127 13 7 7.4439 -6.3440 1.2517 14 6 8.1324 -7.6342 1.3377 15 6 9.4787 -7.4479 2.0404 16 6 10.1975 -8.7956 2.1308 17 6 11.5232 -8.6123 2.8235 18 1 11.8233 -7.6325 3.1647 19 6 12.3536 -9.6951 3.0207 20 7 11.9889 -10.8880 2.6039 21 14 13.9972 -9.4678 3.8786 22 1 14.1702 -8.0395 4.2466 23 1 14.0345 -10.3027 5.1062 24 1 15.0934 -9.8805 2.9658 25 6 2.2340 -3.6644 0.1047 26 6 1.5471 -2.4836 0.1061 27 1 -0.3634 -1.0238 0.0898 28 1 -0.3633 0.5896 0.8417 29 1 -0.3634 0.4341 -0.9315 30 1 4.1769 -0.3444 -0.1906 31 1 5.3927 -2.4667 -0.2021 32 1 3.9306 -5.6525 -0.4265 33 1 7.8604 -5.5468 1.6146 34 1 7.5202 -8.3356 1.9045 35 1 8.2979 -8.0254 0.3338 36 1 10.0906 -6.7467 1.4731 37 1 9.3134 -7.0567 3.0442 38 1 9.5853 -9.4965 2.6981 39 1 10.3626 -9.1873 1.1271 40 1 12.5732 -11.6497 2.7423 41 1 1.6996 -4.5992 0.1869 42 1 0.4703 -2.4845 0.1893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352274770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:48 Heat of formation + Delta-G solvation = -110.385975 kcal Electronic energy + Delta-G solvation = -24380.289333 eV Core-core repulsion = 20517.323913 eV Total energy + Delta-G solvation = -3862.965421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32525 -41.02608 -40.12987 -38.96784 -37.26809 -36.15555 -35.19009 -33.08043 -32.76159 -31.83741 -29.94847 -28.94378 -26.67459 -25.04691 -23.85786 -23.60926 -22.39264 -21.48032 -20.89374 -19.89351 -18.85768 -18.44243 -17.94981 -17.45952 -17.31825 -16.77184 -16.53902 -16.35398 -16.11214 -15.98591 -15.55442 -15.23748 -15.11816 -14.93192 -14.55149 -14.29817 -13.91118 -13.86853 -13.78024 -13.53071 -13.08096 -12.99943 -12.83309 -12.79381 -12.56263 -12.38443 -12.26215 -11.71376 -11.62927 -11.52595 -11.22821 -10.92628 -10.69830 -10.55721 -10.35502 -10.14183 -9.40557 -8.20202 -6.30778 -0.60851 0.19579 0.36660 1.04895 1.37698 1.41114 1.42143 1.54621 1.95621 2.39005 2.45618 2.74431 3.13322 3.14045 3.21188 3.71789 3.85108 4.06079 4.13858 4.17582 4.21442 4.29343 4.40738 4.51720 4.67102 4.69752 4.82797 4.87454 4.90985 5.05817 5.07837 5.14479 5.15904 5.19059 5.25676 5.39877 5.51495 5.70646 5.71068 5.82181 5.84336 6.17108 6.23706 6.52651 6.54796 6.75926 6.86464 7.38744 8.91740 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035197 B = 0.001719 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.332137 B =16284.616118 C =16930.095231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.395 3.605 3 O -0.511 6.511 4 C -0.201 4.201 5 C -0.056 4.056 6 C -0.151 4.151 7 C 0.162 3.838 8 N -0.633 5.633 9 C 0.517 3.483 10 O -0.512 6.512 11 C 0.508 3.492 12 O -0.540 6.540 13 N -0.683 5.683 14 C 0.127 3.873 15 C -0.107 4.107 16 C 0.024 3.976 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.144 4.144 26 C -0.037 4.037 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.436 0.564 33 H 0.420 0.580 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.067 0.933 38 H -0.002 1.002 39 H -0.003 1.003 40 H 0.263 0.737 41 H 0.169 0.831 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.322 17.677 -6.864 33.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.278 3.722 3 O -0.391 6.391 4 C -0.203 4.203 5 C -0.075 4.075 6 C -0.171 4.171 7 C 0.067 3.933 8 N -0.280 5.280 9 C 0.299 3.701 10 O -0.387 6.387 11 C 0.288 3.712 12 O -0.418 6.418 13 N -0.335 5.335 14 C 0.004 3.996 15 C -0.145 4.145 16 C -0.014 4.014 17 C -0.580 4.580 18 H 0.081 0.919 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.789 3.211 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.164 4.164 26 C -0.055 4.055 27 H 0.132 0.868 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.277 0.723 33 H 0.258 0.742 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.072 0.928 41 H 0.186 0.814 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -26.898 17.970 -6.846 33.065 hybrid contribution 1.501 -0.382 0.325 1.583 sum -25.397 17.587 -6.521 31.573 Atomic orbital electron populations 1.22297 0.90098 1.07049 1.05821 1.23069 0.93620 0.86673 0.68878 1.90550 1.73407 1.35871 1.39275 1.20792 0.94092 0.96257 1.09165 1.21085 0.94120 0.97906 0.94426 1.20988 1.01271 0.91583 1.03226 1.18268 0.92420 0.84768 0.97861 1.42977 1.17472 1.13178 1.54357 1.20194 0.82373 0.89023 0.78523 1.90792 1.65108 1.37089 1.45699 1.19924 0.82741 0.88671 0.79900 1.90782 1.66108 1.37446 1.47433 1.45878 1.17623 1.13226 1.56815 1.21517 0.93199 0.83529 1.01327 1.21648 0.93397 0.99292 1.00157 1.18942 0.94346 0.92526 0.95563 1.21716 1.03735 0.94752 1.37842 0.91853 1.25951 1.02373 0.94964 0.96527 1.70095 1.38833 1.00173 1.48115 0.85413 0.78978 0.78646 0.78082 1.18562 1.20548 1.20564 1.21091 0.90856 1.01243 1.03202 1.21497 1.02065 0.89214 0.92695 0.86763 0.88165 0.87528 0.85755 0.85389 0.72300 0.74245 0.91380 0.91414 0.91481 0.91473 0.98386 0.98411 0.92802 0.81356 0.79956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.89 10.19 71.23 0.73 -0.16 16 2 C 0.40 5.78 7.21 27.94 0.20 5.99 16 3 O -0.51 -12.20 17.09 -3.07 -0.05 -12.26 16 4 C -0.20 -2.89 5.87 -20.14 -0.12 -3.01 16 5 C -0.06 -1.09 9.54 22.33 0.21 -0.87 16 6 C -0.15 -3.03 8.62 22.13 0.19 -2.84 16 7 C 0.16 2.63 6.29 38.47 0.24 2.87 16 8 N -0.63 -10.64 5.29 -304.78 -1.61 -12.26 16 9 C 0.52 11.71 7.72 87.24 0.67 12.38 16 10 O -0.51 -13.56 13.90 -3.25 -0.05 -13.60 16 11 C 0.51 13.22 7.89 87.24 0.69 13.90 16 12 O -0.54 -16.10 16.48 -3.29 -0.05 -16.16 16 13 N -0.68 -18.23 5.55 -464.49 -2.58 -20.81 16 14 C 0.13 4.06 5.67 86.38 0.49 4.55 16 15 C -0.11 -3.96 5.27 30.59 0.16 -3.80 16 16 C 0.02 1.20 4.97 29.85 0.15 1.35 16 17 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 18 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 19 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 20 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 21 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 C -0.14 -1.36 9.90 22.14 0.22 -1.14 16 26 C -0.04 -0.28 9.39 22.33 0.21 -0.07 16 27 H 0.11 -0.21 5.61 -2.38 -0.01 -0.23 16 28 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.12 2.58 7.65 -2.91 -0.02 2.56 16 31 H 0.13 2.98 6.23 -2.91 -0.02 2.97 16 32 H 0.44 5.52 8.29 -92.71 -0.77 4.75 16 33 H 0.42 10.02 7.94 -92.71 -0.74 9.28 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 40 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.18 -0.21 5.93 -2.91 -0.02 -0.22 16 Total: -1.00 -74.66 366.45 2.28 -72.38 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.43 Total: 12.61 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 4.74 Total: -0.01 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -3.91 Total: -88.51 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.15 Total: -42.01 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.66 2.28 -72.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352274770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.008 kcal (2) G-P(sol) polarization free energy of solvation -74.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds