Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46746 * 2 1 4 4 C 1.46500 * 119.99720 * 269.99157 * 3 2 1 5 5 C 1.50694 * 109.47761 * 270.00486 * 4 3 2 6 6 H 1.08003 * 119.99975 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00668 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00551 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47124 * 59.99929 * 9 7 5 11 11 H 1.48501 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46793 * 300.00131 * 9 7 5 13 13 C 1.34775 * 120.00572 * 90.00320 * 3 2 1 14 14 O 1.21588 * 120.00016 * 180.02562 * 13 3 2 15 15 N 1.34775 * 119.99812 * 359.97438 * 13 3 2 16 16 C 1.40184 * 119.99952 * 185.62080 * 15 13 3 17 17 C 1.38580 * 120.02444 * 24.84478 * 16 15 13 18 18 C 1.38539 * 120.63462 * 179.72042 * 17 16 15 19 19 C 1.37847 * 120.25449 * 0.09613 * 18 17 16 20 20 C 1.39690 * 119.72620 * 359.97438 * 19 18 17 21 21 C 1.39408 * 120.01980 * 204.56378 * 16 15 13 22 22 O 1.35394 * 120.01002 * 359.84966 * 21 16 15 23 23 C 1.42743 * 118.73797 * 157.83373 * 22 21 16 24 24 C 1.53573 * 109.32951 * 52.60947 * 23 22 21 25 25 C 1.47385 * 120.70234 * 179.73724 * 20 19 18 26 26 O 1.21296 * 121.73750 * 348.09417 * 25 20 19 27 27 H 1.08997 * 109.47607 * 300.00379 * 1 2 3 28 28 H 1.09003 * 109.47108 * 60.00368 * 1 2 3 29 29 H 1.08997 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47607 * 239.99621 * 2 1 3 31 31 H 1.08999 * 109.47360 * 119.99180 * 2 1 3 32 32 H 1.09006 * 109.47072 * 30.00619 * 4 3 2 33 33 H 1.09006 * 109.47277 * 150.00477 * 4 3 2 34 34 H 0.96997 * 120.00155 * 180.02562 * 8 7 5 35 35 H 0.97007 * 120.00131 * 5.62936 * 15 13 3 36 36 H 1.08002 * 119.67930 * 359.74439 * 17 16 15 37 37 H 1.08000 * 119.87045 * 180.12348 * 18 17 16 38 38 H 1.08000 * 120.13937 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.48950 * 292.65527 * 23 22 21 40 40 H 1.08994 * 109.49840 * 172.57748 * 23 22 21 41 41 H 1.09002 * 109.91511 * 181.89606 * 24 23 22 42 42 H 1.08995 * 109.91293 * 60.72963 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1264 -3.6177 9 14 5.9135 2.0963 -3.4170 10 1 6.1402 0.6396 -3.5953 11 1 6.1610 2.7964 -4.7030 12 1 6.8412 2.6186 -2.3819 13 6 2.2429 2.0167 1.1671 14 8 2.6477 3.1632 1.1670 15 7 2.0179 1.3816 2.3343 16 6 2.1378 2.0774 3.5454 17 6 1.9736 3.4531 3.5739 18 6 2.0836 4.1527 4.7645 19 6 2.3608 3.4860 5.9388 20 6 2.5303 2.0995 5.9246 21 6 2.4166 1.3851 4.7229 22 8 2.5687 0.0400 4.6978 23 6 3.3009 -0.5877 5.7501 24 6 2.7240 -0.1475 7.1036 25 6 2.8329 1.3656 7.1665 26 8 3.1528 1.9405 8.1855 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.5817 1.6876 -2.0285 33 1 2.0955 3.1410 -1.1385 34 1 3.6755 3.5168 -4.4436 35 1 1.7731 0.4429 2.3365 36 1 1.7573 3.9849 2.6591 37 1 1.9513 5.2245 4.7729 38 1 2.4466 4.0333 6.8659 39 1 4.3490 -0.2948 5.6889 40 1 3.2193 -1.6704 5.6546 41 1 3.2978 -0.5952 7.9151 42 1 1.6788 -0.4479 7.1770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356699829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -63.011347 kcal Electronic energy + Delta-G solvation = -26783.199530 eV Core-core repulsion = 22922.288428 eV Total energy + Delta-G solvation = -3860.911103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24710 -39.89062 -38.58997 -37.60125 -35.49061 -34.50398 -32.77088 -32.23818 -30.71038 -30.17986 -29.40068 -26.87373 -24.89966 -24.17877 -23.21489 -23.07696 -21.69941 -20.19155 -18.98973 -18.38924 -17.84478 -17.10020 -16.57879 -16.42399 -15.94431 -15.38091 -15.04496 -14.99079 -14.73614 -14.60520 -14.43976 -14.18174 -13.93102 -13.61431 -13.22686 -13.10970 -12.69892 -12.32196 -12.11362 -12.07510 -12.00858 -11.76590 -11.39255 -11.22676 -11.17384 -10.97204 -10.80635 -10.55157 -10.35639 -10.13492 -9.95538 -9.66768 -9.27471 -8.66222 -8.44485 -7.93250 -7.55152 -6.05789 -4.10492 0.55312 1.30990 2.20133 2.83874 3.08756 3.31216 3.35839 3.39447 3.57247 3.66981 3.97699 4.24905 4.31077 4.46432 4.46886 4.64058 4.72982 5.04920 5.07833 5.17776 5.23833 5.28360 5.34319 5.39323 5.48891 5.54497 5.62387 5.67849 5.95101 6.04793 6.14575 6.17452 6.42266 6.44467 6.59217 6.73968 6.84540 7.17567 7.26207 7.31768 7.46702 7.62834 7.91738 8.20954 8.52220 8.89530 9.16516 9.54861 11.02043 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.003370 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.458308 B = 8307.335848 C = 8520.440236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.699 3.301 14 O -0.569 6.569 15 N -0.686 5.686 16 C 0.153 3.847 17 C -0.071 4.071 18 C -0.137 4.137 19 C -0.059 4.059 20 C -0.233 4.233 21 C 0.134 3.866 22 O -0.313 6.313 23 C 0.073 3.927 24 C -0.204 4.204 25 C 0.405 3.595 26 O -0.451 6.451 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.407 0.593 36 H 0.164 0.836 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 -8.757 17.879 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.401 3.599 14 O -0.446 6.446 15 N -0.335 5.335 16 C 0.055 3.945 17 C -0.092 4.092 18 C -0.155 4.155 19 C -0.079 4.079 20 C -0.235 4.235 21 C 0.085 3.915 22 O -0.227 6.227 23 C -0.002 4.002 24 C -0.241 4.241 25 C 0.283 3.717 26 O -0.326 6.326 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.245 0.755 36 H 0.181 0.819 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.413 -7.691 17.923 20.241 hybrid contribution 1.002 -0.735 -0.241 1.266 sum -4.411 -8.426 17.682 20.078 Atomic orbital electron populations 1.22237 0.96547 1.01536 1.02551 1.21391 0.93682 0.84230 1.02521 1.47638 1.66595 1.13393 1.06180 1.19243 0.96239 0.93499 0.76844 1.21416 0.96978 1.32039 1.06285 0.92548 1.24911 0.97815 0.94885 0.96360 1.69915 1.35720 1.33359 1.14375 0.86565 0.84840 0.78226 0.77820 1.20287 1.21166 1.20208 1.15907 0.79007 0.84935 0.80051 1.90842 1.51572 1.16760 1.85430 1.42858 1.73117 1.14327 1.03179 1.17011 1.03221 0.91360 0.82870 1.21766 0.95243 0.91973 1.00200 1.21040 1.02508 1.00486 0.91511 1.21047 0.96088 0.91839 0.98883 1.20187 1.14371 0.95590 0.93393 1.18687 0.98460 0.82276 0.92064 1.85673 1.71100 1.17148 1.48760 1.22967 0.95113 0.98571 0.83562 1.23060 1.05430 0.95293 1.00349 1.22399 0.71977 0.90847 0.86505 1.90541 1.35607 1.73130 1.33318 0.93038 0.91787 0.92057 0.89455 0.92363 0.94699 0.93663 0.92638 0.75541 0.81857 0.84863 0.84984 0.91228 0.86167 0.87304 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.62 5.94 -4.04 -0.02 1.60 16 3 N -0.60 -12.35 2.46 -180.80 -0.44 -12.79 16 4 C 0.26 6.60 5.16 -5.20 -0.03 6.57 16 5 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.70 14.39 8.08 -86.92 -0.70 13.69 16 14 O -0.57 -13.84 13.08 5.29 0.07 -13.77 16 15 N -0.69 -11.11 5.17 -14.10 -0.07 -11.18 16 16 C 0.15 2.38 6.45 -83.47 -0.54 1.84 16 17 C -0.07 -1.11 8.71 -39.34 -0.34 -1.46 16 18 C -0.14 -1.78 10.03 -39.61 -0.40 -2.18 16 19 C -0.06 -0.75 9.65 -39.18 -0.38 -1.13 16 20 C -0.23 -3.00 5.83 -104.87 -0.61 -3.61 16 21 C 0.13 1.79 6.57 -38.38 -0.25 1.54 16 22 O -0.31 -3.52 9.62 -17.87 -0.17 -3.69 16 23 C 0.07 0.56 6.98 37.45 0.26 0.82 16 24 C -0.20 -1.52 6.45 -27.02 -0.17 -1.70 16 25 C 0.40 4.70 6.98 -30.02 -0.21 4.49 16 26 O -0.45 -6.36 17.42 5.54 0.10 -6.26 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.41 5.56 6.03 -40.82 -0.25 5.32 16 36 H 0.16 2.92 5.74 -52.49 -0.30 2.62 16 37 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.49 7.81 -52.49 -0.41 1.08 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -33.74 354.41 -8.34 -42.07 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.43 Total: 3.69 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -3.44 Total: 5.33 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.22 Total: -49.38 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.01 Total: -23.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.74 -8.34 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356699829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.936 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds