Wall clock time and date at job start Tue Mar 31 2020 13:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46746 * 2 1 4 4 C 1.46500 * 119.99720 * 269.99157 * 3 2 1 5 5 C 1.50694 * 109.47761 * 270.00486 * 4 3 2 6 6 H 1.08003 * 119.99975 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00668 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00551 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47124 * 59.99929 * 9 7 5 11 11 H 1.48501 * 109.47203 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46793 * 300.00131 * 9 7 5 13 13 C 1.34775 * 120.00572 * 90.00320 * 3 2 1 14 14 O 1.21588 * 120.00016 * 180.02562 * 13 3 2 15 15 N 1.34775 * 119.99812 * 359.97438 * 13 3 2 16 16 C 1.40184 * 119.99952 * 185.62080 * 15 13 3 17 17 C 1.38580 * 120.02444 * 24.84478 * 16 15 13 18 18 C 1.38539 * 120.63462 * 179.72042 * 17 16 15 19 19 C 1.37847 * 120.25449 * 0.09613 * 18 17 16 20 20 C 1.39690 * 119.72620 * 359.97438 * 19 18 17 21 21 C 1.39408 * 120.01980 * 204.56378 * 16 15 13 22 22 O 1.35394 * 120.01002 * 359.84966 * 21 16 15 23 23 C 1.42743 * 118.73797 * 157.83373 * 22 21 16 24 24 C 1.53573 * 109.32951 * 52.60947 * 23 22 21 25 25 C 1.47385 * 120.70234 * 179.73724 * 20 19 18 26 26 O 1.21296 * 121.73750 * 348.09417 * 25 20 19 27 27 H 1.08997 * 109.47607 * 300.00379 * 1 2 3 28 28 H 1.09003 * 109.47108 * 60.00368 * 1 2 3 29 29 H 1.08997 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47607 * 239.99621 * 2 1 3 31 31 H 1.08999 * 109.47360 * 119.99180 * 2 1 3 32 32 H 1.09006 * 109.47072 * 30.00619 * 4 3 2 33 33 H 1.09006 * 109.47277 * 150.00477 * 4 3 2 34 34 H 0.96997 * 120.00155 * 180.02562 * 8 7 5 35 35 H 0.97007 * 120.00131 * 5.62936 * 15 13 3 36 36 H 1.08002 * 119.67930 * 359.74439 * 17 16 15 37 37 H 1.08000 * 119.87045 * 180.12348 * 18 17 16 38 38 H 1.08000 * 120.13937 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.48950 * 292.65527 * 23 22 21 40 40 H 1.08994 * 109.49840 * 172.57748 * 23 22 21 41 41 H 1.09002 * 109.91511 * 181.89606 * 24 23 22 42 42 H 1.08995 * 109.91293 * 60.72963 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1264 -3.6177 9 14 5.9135 2.0963 -3.4170 10 1 6.1402 0.6396 -3.5953 11 1 6.1610 2.7964 -4.7030 12 1 6.8412 2.6186 -2.3819 13 6 2.2429 2.0167 1.1671 14 8 2.6477 3.1632 1.1670 15 7 2.0179 1.3816 2.3343 16 6 2.1378 2.0774 3.5454 17 6 1.9736 3.4531 3.5739 18 6 2.0836 4.1527 4.7645 19 6 2.3608 3.4860 5.9388 20 6 2.5303 2.0995 5.9246 21 6 2.4166 1.3851 4.7229 22 8 2.5687 0.0400 4.6978 23 6 3.3009 -0.5877 5.7501 24 6 2.7240 -0.1475 7.1036 25 6 2.8329 1.3656 7.1665 26 8 3.1528 1.9405 8.1855 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.5817 1.6876 -2.0285 33 1 2.0955 3.1410 -1.1385 34 1 3.6755 3.5168 -4.4436 35 1 1.7731 0.4429 2.3365 36 1 1.7573 3.9849 2.6591 37 1 1.9513 5.2245 4.7729 38 1 2.4466 4.0333 6.8659 39 1 4.3490 -0.2948 5.6889 40 1 3.2193 -1.6704 5.6546 41 1 3.2978 -0.5952 7.9151 42 1 1.6788 -0.4479 7.1770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356699829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:52 Heat of formation + Delta-G solvation = -84.504808 kcal Electronic energy + Delta-G solvation = -26784.131557 eV Core-core repulsion = 22922.288428 eV Total energy + Delta-G solvation = -3861.843129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.29800 -41.25162 -39.58989 -38.67567 -37.04789 -35.92462 -34.76046 -33.04558 -31.74500 -31.60048 -30.65627 -28.69934 -25.74405 -25.30541 -24.92744 -24.33910 -22.90099 -21.40776 -20.17232 -19.61300 -18.91867 -18.54961 -18.28631 -17.55334 -17.17426 -16.65619 -16.43517 -16.19223 -15.95993 -15.73347 -15.52384 -15.46762 -15.19153 -14.84574 -14.52614 -14.36977 -13.99892 -13.70843 -13.31635 -13.27825 -13.12931 -13.10058 -12.96613 -12.68456 -12.51124 -12.20656 -12.14592 -12.02371 -11.88078 -11.77641 -11.59256 -10.99790 -10.74342 -10.61717 -9.78550 -9.52835 -8.82756 -8.19705 -6.34365 -0.46846 0.21866 1.22435 1.37761 1.41761 1.48542 1.63305 2.01929 2.15029 2.40144 2.75668 2.82902 2.97414 3.10070 3.59809 3.64506 3.79855 4.04345 4.10039 4.13825 4.24971 4.26552 4.37294 4.44460 4.53938 4.59630 4.76258 4.85837 4.87307 4.94014 4.96666 5.04836 5.13285 5.21638 5.35591 5.36726 5.44126 5.58250 5.70029 5.79968 6.05836 6.08688 6.23183 6.31595 6.73980 7.02742 7.32150 7.60131 8.86361 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.003370 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.458308 B = 8307.335848 C = 8520.440236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.695 3.305 14 O -0.616 6.616 15 N -0.666 5.666 16 C 0.123 3.877 17 C -0.089 4.089 18 C -0.136 4.136 19 C -0.056 4.056 20 C -0.244 4.244 21 C 0.151 3.849 22 O -0.317 6.317 23 C 0.065 3.935 24 C -0.191 4.191 25 C 0.404 3.596 26 O -0.479 6.479 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.001 0.999 34 H 0.267 0.733 35 H 0.420 0.580 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.133 0.867 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -11.661 19.829 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.344 5.344 4 C 0.158 3.842 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.397 3.603 14 O -0.497 6.497 15 N -0.317 5.317 16 C 0.026 3.974 17 C -0.110 4.110 18 C -0.155 4.155 19 C -0.075 4.075 20 C -0.246 4.246 21 C 0.102 3.898 22 O -0.231 6.231 23 C -0.009 4.009 24 C -0.228 4.228 25 C 0.284 3.716 26 O -0.356 6.356 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.087 0.913 40 H 0.179 0.821 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.931 -10.670 19.916 23.126 hybrid contribution 0.815 0.150 -0.723 1.100 sum -4.117 -10.520 19.193 22.271 Atomic orbital electron populations 1.22156 0.94390 1.03654 1.01682 1.21713 0.95425 0.81367 1.03764 1.47499 1.66981 1.15214 1.04696 1.18663 0.95201 0.91480 0.78882 1.21693 0.97994 1.32053 1.06477 0.93061 1.25789 1.02128 0.94500 0.96427 1.70032 1.37688 1.34117 1.14797 0.85520 0.79296 0.79010 0.77282 1.18463 1.20343 1.20654 1.16046 0.78718 0.84480 0.81020 1.90815 1.53608 1.18943 1.86315 1.42457 1.72501 1.14625 1.02085 1.17178 1.05392 0.91598 0.83203 1.21623 0.96745 0.92548 1.00071 1.21191 1.02098 1.01445 0.90760 1.21296 0.94865 0.92227 0.99077 1.20545 1.13979 0.95907 0.94193 1.18537 0.96897 0.83343 0.91055 1.85677 1.71308 1.15593 1.50473 1.23397 0.94593 1.00374 0.82542 1.23083 1.07140 0.91562 1.01041 1.22890 0.70675 0.92866 0.85183 1.90538 1.36952 1.74188 1.33965 0.92821 0.93763 0.88324 0.90019 0.89240 0.95307 0.98073 0.92403 0.73989 0.84814 0.82965 0.83509 0.91349 0.82125 0.84881 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.15 16 2 C 0.10 2.97 5.94 86.38 0.51 3.48 16 3 N -0.61 -25.69 2.46 -844.20 -2.07 -27.76 16 4 C 0.28 14.85 5.16 85.63 0.44 15.29 16 5 C -0.54 -31.10 9.39 25.60 0.24 -30.86 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.62 5.46 84.65 0.46 1.08 16 8 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.70 29.72 8.08 179.06 1.45 31.17 16 14 O -0.62 -31.93 13.08 -3.99 -0.05 -31.98 16 15 N -0.67 -21.61 5.17 -316.79 -1.64 -23.25 16 16 C 0.12 3.84 6.45 38.17 0.25 4.08 16 17 C -0.09 -2.92 8.71 22.42 0.20 -2.72 16 18 C -0.14 -3.59 10.03 22.25 0.22 -3.36 16 19 C -0.06 -1.35 9.65 22.53 0.22 -1.14 16 20 C -0.24 -5.90 5.83 -20.03 -0.12 -6.02 16 21 C 0.15 3.82 6.57 23.04 0.15 3.97 16 22 O -0.32 -6.17 9.62 -86.87 -0.84 -7.01 16 23 C 0.06 0.72 6.98 72.17 0.50 1.22 16 24 C -0.19 -2.07 6.45 30.40 0.20 -1.87 16 25 C 0.40 8.38 6.98 28.46 0.20 8.58 16 26 O -0.48 -12.60 17.42 -3.08 -0.05 -12.65 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 31 H 0.09 2.08 6.29 -2.39 -0.02 2.07 16 32 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 33 H 0.00 0.07 7.42 -2.38 -0.02 0.05 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.42 10.87 6.03 -92.70 -0.56 10.31 16 36 H 0.13 5.23 5.74 -2.91 -0.02 5.21 16 37 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.15 3.12 7.81 -2.91 -0.02 3.10 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.16 0.56 8.14 -2.39 -0.02 0.55 16 41 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.46 354.41 3.81 -73.64 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.50 Total: 17.73 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 5.66 Total: 19.75 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.43 Total: -106.29 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.94 Total: -51.64 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -77.46 3.81 -73.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356699829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.863 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds