Wall clock time and date at job start Tue Mar 31 2020 12:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.44806 * 2 1 4 4 O 1.42997 * 109.44348 * 119.93110 * 2 1 3 5 5 C 1.35976 * 116.72344 * 166.48511 * 4 2 1 6 6 C 1.38393 * 120.67839 * 147.07241 * 5 4 2 7 7 C 1.38317 * 119.86681 * 180.02562 * 6 5 4 8 8 C 1.38274 * 120.26252 * 0.02941 * 7 6 5 9 9 C 1.38285 * 120.19786 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.81650 * 359.97438 * 9 8 7 11 11 N 1.40220 * 120.74648 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.50533 * 15.47752 * 11 10 9 13 13 C 1.53001 * 109.47167 * 269.97547 * 12 11 10 14 14 C 1.50703 * 109.47189 * 180.02562 * 13 12 11 15 15 O 1.21285 * 119.99965 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99977 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99538 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46969 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99985 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00358 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00205 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46900 * 60.00556 * 22 20 18 24 24 H 1.48506 * 109.47075 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47278 * 300.00496 * 22 20 18 26 26 C 1.35082 * 118.98300 * 195.46170 * 11 10 9 27 27 O 1.21297 * 120.13129 * 181.69331 * 26 11 10 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00317 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00298 * 1 2 3 31 31 H 1.07998 * 120.06803 * 0.03132 * 6 5 4 32 32 H 1.07999 * 119.86748 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.90003 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.09262 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.47800 * 29.98027 * 12 11 10 36 36 H 1.09004 * 109.46985 * 149.98260 * 12 11 10 37 37 H 1.08993 * 109.47549 * 300.00684 * 13 12 11 38 38 H 1.09007 * 109.46831 * 60.00940 * 13 12 11 39 39 H 0.96993 * 120.00067 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.47165 * 299.99177 * 17 16 14 41 41 H 1.08996 * 109.47537 * 59.99519 * 17 16 14 42 42 H 0.97006 * 120.00281 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6728 1.1686 5 6 3.3231 -1.0103 1.1860 6 6 4.0347 -1.0167 2.3729 7 6 5.3740 -1.3623 2.3711 8 6 6.0048 -1.7008 1.1881 9 6 5.3002 -1.6966 -0.0018 10 6 3.9586 -1.3525 -0.0065 11 7 3.2253 -1.3423 -1.2016 12 6 3.7461 -2.0061 -2.3993 13 6 4.5835 -1.0140 -3.2089 14 6 5.1187 -1.6966 -4.4412 15 8 4.8558 -2.8618 -4.6515 16 7 5.8894 -1.0123 -5.3097 17 6 6.4092 -1.6759 -6.5079 18 6 7.2341 -0.6988 -7.3053 19 1 7.3584 0.3152 -6.9548 20 6 7.8301 -1.0992 -8.4823 21 7 7.6784 -2.3338 -8.9094 22 14 8.8521 0.1122 -9.4711 23 1 9.9850 0.5965 -8.6419 24 1 9.3790 -0.5604 -10.6857 25 1 8.0043 1.2636 -9.8719 26 6 2.0314 -0.7112 -1.2316 27 8 1.3656 -0.7157 -2.2456 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 3.5453 -0.7525 3.2987 32 1 5.9293 -1.3677 3.2974 33 1 7.0509 -1.9693 1.1935 34 1 5.7945 -1.9617 -0.9247 35 1 4.3682 -2.8513 -2.1049 36 1 2.9148 -2.3615 -3.0082 37 1 3.9615 -0.1688 -3.5033 38 1 5.4149 -0.6586 -2.6000 39 1 6.0994 -0.0804 -5.1417 40 1 7.0308 -2.5217 -6.2141 41 1 5.5774 -2.0304 -7.1167 42 1 8.0975 -2.6155 -9.7377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357848120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:02 Heat of formation + Delta-G solvation = -81.422176 kcal Electronic energy + Delta-G solvation = -26118.366716 eV Core-core repulsion = 22256.657260 eV Total energy + Delta-G solvation = -3861.709456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89341 -39.25207 -38.93890 -37.96389 -36.08969 -34.25846 -32.47375 -32.40902 -31.71442 -30.54957 -29.17602 -27.49104 -25.67657 -23.67530 -23.62074 -22.66469 -21.87950 -19.73508 -19.67670 -19.45633 -17.75527 -17.25276 -16.97581 -16.01127 -15.73778 -15.57495 -15.39732 -15.06944 -14.94673 -14.75193 -14.65551 -14.22091 -14.10613 -13.56384 -13.27066 -13.05851 -12.79869 -12.63897 -12.52757 -12.38501 -12.20801 -11.97414 -11.77534 -11.50487 -11.43072 -11.12833 -11.03176 -10.88471 -10.61777 -10.34693 -10.13766 -9.44802 -9.17191 -8.97577 -8.76765 -8.12337 -7.94708 -6.19166 -4.26567 0.77939 0.95351 2.03986 2.25432 2.88730 3.23391 3.26418 3.28364 3.29810 3.40318 3.64179 4.04616 4.32781 4.36052 4.39279 4.52232 4.67804 4.86628 4.89932 4.93561 4.97676 5.09350 5.16859 5.28813 5.30125 5.34288 5.41031 5.60781 5.66990 5.70213 5.75145 5.87615 5.92268 6.13968 6.17852 6.33851 6.64851 7.06362 7.25532 7.36219 7.47682 7.50711 7.61774 7.93634 8.55273 8.72632 9.01551 9.39974 10.90971 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002698 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.035519 B =10376.230200 C =11223.809821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.079 3.921 3 H 0.103 0.897 4 O -0.303 6.303 5 C 0.075 3.925 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.108 4.108 9 C -0.123 4.123 10 C 0.100 3.900 11 N -0.550 5.550 12 C 0.126 3.874 13 C -0.159 4.159 14 C 0.503 3.497 15 O -0.556 6.556 16 N -0.710 5.710 17 C 0.249 3.751 18 C -0.545 4.545 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.487 3.513 27 O -0.497 6.497 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.391 0.609 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 5.982 25.283 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.020 3.980 3 H 0.121 0.879 4 O -0.218 6.218 5 C 0.028 3.972 6 C -0.129 4.129 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.144 4.144 10 C 0.005 3.995 11 N -0.274 5.274 12 C 0.005 3.995 13 C -0.200 4.200 14 C 0.287 3.713 15 O -0.436 6.436 16 N -0.358 5.358 17 C 0.129 3.871 18 C -0.584 4.584 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.200 1.200 26 C 0.274 3.726 27 O -0.370 6.370 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.224 0.776 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.765 4.968 24.419 26.416 hybrid contribution 0.937 1.104 -0.819 1.663 sum -7.829 6.072 23.600 25.596 Atomic orbital electron populations 1.21715 0.88935 1.04456 1.04065 1.22670 0.98074 0.96167 0.81128 0.87948 1.86223 1.21585 1.74258 1.39741 1.18606 0.83568 1.02163 0.92815 1.20509 0.93565 1.02508 0.96269 1.20998 0.93689 1.00028 0.98619 1.21048 1.00358 0.99678 0.91597 1.20861 0.91276 1.02243 0.99971 1.18186 0.92829 1.03560 0.84936 1.45876 1.18889 1.52192 1.10453 1.21454 0.99742 0.94329 0.84017 1.22030 1.01105 1.00375 0.96537 1.20152 0.79577 0.87177 0.84373 1.90680 1.59575 1.16779 1.76575 1.46469 1.49803 1.14743 1.24748 1.19127 0.94166 0.93382 0.80455 1.21182 1.32429 0.97450 1.07307 0.91951 1.24952 0.96328 0.95481 0.97217 1.69964 1.43431 1.16517 1.22338 0.86466 0.80270 0.80796 0.79328 1.20043 1.21024 1.20049 1.21566 0.80609 0.79489 0.90908 1.90785 1.55101 1.58006 1.33132 0.91019 0.88916 0.90243 0.84516 0.84953 0.84935 0.84506 0.88548 0.87841 0.88888 0.89028 0.77635 0.95430 0.95459 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.14 37.16 0.34 -0.73 16 2 C 0.08 0.77 3.69 -27.83 -0.10 0.67 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 4 O -0.30 -3.18 10.09 -19.66 -0.20 -3.37 16 5 C 0.07 0.78 6.44 -39.10 -0.25 0.53 16 6 C -0.11 -0.89 10.00 -39.50 -0.39 -1.29 16 7 C -0.11 -0.81 10.04 -39.54 -0.40 -1.21 16 8 C -0.11 -0.86 10.04 -39.55 -0.40 -1.26 16 9 C -0.12 -1.23 8.95 -39.47 -0.35 -1.58 16 10 C 0.10 1.12 6.38 -83.49 -0.53 0.59 16 11 N -0.55 -7.02 2.72 -113.19 -0.31 -7.33 16 12 C 0.13 1.78 4.06 -4.04 -0.02 1.76 16 13 C -0.16 -2.27 5.88 -27.88 -0.16 -2.43 16 14 C 0.50 9.84 7.83 -10.98 -0.09 9.75 16 15 O -0.56 -13.05 15.98 5.55 0.09 -12.96 16 16 N -0.71 -14.82 5.55 -61.47 -0.34 -15.16 16 17 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 18 C -0.55 -14.78 9.28 -34.44 -0.32 -15.09 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 22 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.49 6.34 7.38 -10.80 -0.08 6.26 16 27 O -0.50 -7.86 15.80 5.54 0.09 -7.77 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.72 7.86 -51.93 -0.41 0.32 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.14 1.36 5.99 -52.48 -0.31 1.05 16 35 H 0.10 1.32 7.02 -51.93 -0.36 0.96 16 36 H 0.10 1.69 7.40 -51.93 -0.38 1.30 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.09 7.19 -51.93 -0.37 0.71 16 39 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -33.82 356.98 -7.98 -41.80 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.52 Total: 4.75 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.88 Total: 4.22 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.09 Total: -47.82 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.02 Total: -24.11 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.82 -7.98 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357848120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.627 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds