Wall clock time and date at job start Tue Mar 31 2020 12:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.44806 * 2 1 4 4 O 1.42997 * 109.44348 * 119.93110 * 2 1 3 5 5 C 1.35976 * 116.72344 * 166.48511 * 4 2 1 6 6 C 1.38393 * 120.67839 * 147.07241 * 5 4 2 7 7 C 1.38317 * 119.86681 * 180.02562 * 6 5 4 8 8 C 1.38274 * 120.26252 * 0.02941 * 7 6 5 9 9 C 1.38285 * 120.19786 * 359.97438 * 8 7 6 10 10 C 1.38505 * 119.81650 * 359.97438 * 9 8 7 11 11 N 1.40220 * 120.74648 * 180.02562 * 10 9 8 12 12 C 1.46499 * 120.50533 * 15.47752 * 11 10 9 13 13 C 1.53001 * 109.47167 * 269.97547 * 12 11 10 14 14 C 1.50703 * 109.47189 * 180.02562 * 13 12 11 15 15 O 1.21285 * 119.99965 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99977 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99538 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.46969 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99985 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00358 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00205 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46900 * 60.00556 * 22 20 18 24 24 H 1.48506 * 109.47075 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47278 * 300.00496 * 22 20 18 26 26 C 1.35082 * 118.98300 * 195.46170 * 11 10 9 27 27 O 1.21297 * 120.13129 * 181.69331 * 26 11 10 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00317 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00298 * 1 2 3 31 31 H 1.07998 * 120.06803 * 0.03132 * 6 5 4 32 32 H 1.07999 * 119.86748 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.90003 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.09262 * 180.02562 * 9 8 7 35 35 H 1.08998 * 109.47800 * 29.98027 * 12 11 10 36 36 H 1.09004 * 109.46985 * 149.98260 * 12 11 10 37 37 H 1.08993 * 109.47549 * 300.00684 * 13 12 11 38 38 H 1.09007 * 109.46831 * 60.00940 * 13 12 11 39 39 H 0.96993 * 120.00067 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.47165 * 299.99177 * 17 16 14 41 41 H 1.08996 * 109.47537 * 59.99519 * 17 16 14 42 42 H 0.97006 * 120.00281 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6728 1.1686 5 6 3.3231 -1.0103 1.1860 6 6 4.0347 -1.0167 2.3729 7 6 5.3740 -1.3623 2.3711 8 6 6.0048 -1.7008 1.1881 9 6 5.3002 -1.6966 -0.0018 10 6 3.9586 -1.3525 -0.0065 11 7 3.2253 -1.3423 -1.2016 12 6 3.7461 -2.0061 -2.3993 13 6 4.5835 -1.0140 -3.2089 14 6 5.1187 -1.6966 -4.4412 15 8 4.8558 -2.8618 -4.6515 16 7 5.8894 -1.0123 -5.3097 17 6 6.4092 -1.6759 -6.5079 18 6 7.2341 -0.6988 -7.3053 19 1 7.3584 0.3152 -6.9548 20 6 7.8301 -1.0992 -8.4823 21 7 7.6784 -2.3338 -8.9094 22 14 8.8521 0.1122 -9.4711 23 1 9.9850 0.5965 -8.6419 24 1 9.3790 -0.5604 -10.6857 25 1 8.0043 1.2636 -9.8719 26 6 2.0314 -0.7112 -1.2316 27 8 1.3656 -0.7157 -2.2456 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 3.5453 -0.7525 3.2987 32 1 5.9293 -1.3677 3.2974 33 1 7.0509 -1.9693 1.1935 34 1 5.7945 -1.9617 -0.9247 35 1 4.3682 -2.8513 -2.1049 36 1 2.9148 -2.3615 -3.0082 37 1 3.9615 -0.1688 -3.5033 38 1 5.4149 -0.6586 -2.6000 39 1 6.0994 -0.0804 -5.1417 40 1 7.0308 -2.5217 -6.2141 41 1 5.5774 -2.0304 -7.1167 42 1 8.0975 -2.6155 -9.7377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357848120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:01 Heat of formation + Delta-G solvation = -104.784700 kcal Electronic energy + Delta-G solvation = -26119.379791 eV Core-core repulsion = 22256.657260 eV Total energy + Delta-G solvation = -3862.722531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.74785 -40.68607 -40.02324 -38.79103 -37.06525 -36.20000 -34.41481 -33.22531 -32.90706 -31.25271 -30.06662 -29.29072 -26.88390 -24.95249 -24.36061 -23.99610 -23.00994 -21.43946 -20.49981 -20.28108 -19.13135 -18.37025 -18.06204 -17.47215 -17.19345 -16.82125 -16.49446 -16.43482 -16.19843 -15.78919 -15.56000 -15.42398 -15.22952 -14.52568 -14.50202 -14.23882 -14.10973 -13.98141 -13.67170 -13.49311 -13.31135 -13.14418 -12.95160 -12.83748 -12.70124 -12.37520 -12.26192 -12.20863 -12.11314 -11.55297 -11.51612 -11.11668 -10.85853 -10.82083 -9.90488 -9.66914 -8.93579 -8.31322 -6.48432 0.03757 0.28664 1.14995 1.29321 1.41845 1.45798 1.54130 1.63163 2.12875 2.30933 2.54823 2.72608 2.84512 3.03489 3.60186 3.60758 3.67160 3.79307 3.85615 3.89128 4.07225 4.26729 4.28948 4.34276 4.46794 4.51006 4.66319 4.70302 4.74684 4.81197 4.98279 5.07556 5.11691 5.20421 5.25931 5.30621 5.43300 5.54445 5.62711 5.70260 5.81323 5.81952 6.27413 6.54475 6.61477 6.79929 7.19834 7.38748 8.80644 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002698 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.035519 B =10376.230200 C =11223.809821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.083 3.917 3 H 0.126 0.874 4 O -0.307 6.307 5 C 0.060 3.940 6 C -0.108 4.108 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.134 4.134 10 C 0.073 3.927 11 N -0.550 5.550 12 C 0.132 3.868 13 C -0.136 4.136 14 C 0.503 3.497 15 O -0.599 6.599 16 N -0.705 5.705 17 C 0.266 3.734 18 C -0.559 4.559 19 H 0.084 0.916 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.985 3.015 23 H -0.260 1.260 24 H -0.285 1.285 25 H -0.264 1.264 26 C 0.478 3.522 27 O -0.537 6.537 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.409 0.591 40 H -0.008 1.008 41 H -0.014 1.014 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 8.521 27.923 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.024 3.976 3 H 0.143 0.857 4 O -0.223 6.223 5 C 0.014 3.986 6 C -0.126 4.126 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.154 4.154 10 C -0.021 4.021 11 N -0.274 5.274 12 C 0.010 3.990 13 C -0.177 4.177 14 C 0.289 3.711 15 O -0.481 6.481 16 N -0.354 5.354 17 C 0.143 3.857 18 C -0.597 4.597 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.808 3.192 23 H -0.184 1.184 24 H -0.211 1.211 25 H -0.188 1.188 26 C 0.267 3.733 27 O -0.413 6.413 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.177 0.823 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.245 0.755 40 H 0.010 0.990 41 H 0.004 0.996 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.500 7.544 27.134 29.144 hybrid contribution 0.557 0.230 -1.509 1.625 sum -6.944 7.774 25.624 27.663 Atomic orbital electron populations 1.21741 0.87745 1.04040 1.05282 1.22820 0.98915 0.96517 0.79333 0.85663 1.86213 1.21915 1.74556 1.39579 1.18915 0.83652 1.02774 0.93263 1.20873 0.93986 1.01567 0.96201 1.21421 0.93348 0.97699 0.99541 1.21370 1.01344 0.98856 0.91130 1.20970 0.91006 1.02630 1.00797 1.18400 0.93432 1.05745 0.84507 1.45822 1.19145 1.51942 1.10472 1.21178 0.98607 0.94579 0.84633 1.21879 1.02042 0.99807 0.93961 1.21020 0.78219 0.86646 0.85177 1.90660 1.60741 1.19025 1.77665 1.46201 1.50140 1.15533 1.23538 1.18574 0.92235 0.92984 0.81923 1.21586 1.32209 0.98280 1.07576 0.89815 1.26070 0.97553 0.97419 0.98510 1.70130 1.44739 1.19016 1.23017 0.85207 0.78614 0.78047 0.77356 1.18428 1.21051 1.18820 1.22309 0.80250 0.79115 0.91603 1.90759 1.56146 1.59629 1.34775 0.92281 0.89013 0.87609 0.82299 0.81616 0.82811 0.85098 0.88498 0.90752 0.87886 0.85722 0.75523 0.98970 0.99608 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.14 71.98 0.66 -1.29 16 2 C 0.08 1.53 3.69 29.88 0.11 1.64 16 3 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 4 O -0.31 -5.95 10.09 -93.27 -0.94 -6.89 16 5 C 0.06 1.14 6.44 22.58 0.15 1.28 16 6 C -0.11 -1.40 10.00 22.33 0.22 -1.18 16 7 C -0.10 -1.04 10.04 22.30 0.22 -0.82 16 8 C -0.11 -1.41 10.04 22.29 0.22 -1.19 16 9 C -0.13 -2.47 8.95 22.34 0.20 -2.27 16 10 C 0.07 1.57 6.38 38.14 0.24 1.81 16 11 N -0.55 -14.10 2.72 -630.25 -1.71 -15.82 16 12 C 0.13 3.88 4.06 86.38 0.35 4.23 16 13 C -0.14 -3.85 5.88 29.85 0.18 -3.67 16 14 C 0.50 20.20 7.83 87.66 0.69 20.88 16 15 O -0.60 -29.61 15.98 -3.05 -0.05 -29.65 16 16 N -0.70 -29.92 5.55 -466.78 -2.59 -32.51 16 17 C 0.27 14.66 5.43 85.63 0.46 15.12 16 18 C -0.56 -30.47 9.28 25.60 0.24 -30.23 16 19 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 20 C 0.00 0.24 5.46 84.65 0.46 0.70 16 21 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 22 Si 0.98 42.26 29.54 68.60 2.03 44.29 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 C 0.48 12.58 7.38 87.64 0.65 13.23 16 27 O -0.54 -17.64 15.80 -3.08 -0.05 -17.69 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.39 7.86 -2.39 -0.02 1.37 16 30 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.13 2.50 5.99 -2.91 -0.02 2.48 16 35 H 0.10 2.78 7.02 -2.39 -0.02 2.76 16 36 H 0.07 2.61 7.40 -2.38 -0.02 2.59 16 37 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.12 2.74 7.19 -2.38 -0.02 2.73 16 39 H 0.41 14.31 8.32 -92.71 -0.77 13.53 16 40 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 41 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 42 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -77.35 356.98 2.30 -75.05 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.28 Total: 21.02 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 5.05 Total: 18.24 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -4.02 Total: -104.37 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -1.04 Total: -54.23 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -77.35 2.30 -75.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357848120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.734 kcal (2) G-P(sol) polarization free energy of solvation -77.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds