Wall clock time and date at job start Tue Mar 31 2020 13:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99968 * 2 1 4 4 N 1.46498 * 109.46689 * 125.00151 * 3 2 1 5 5 C 1.46502 * 120.00197 * 262.75452 * 4 3 2 6 6 C 1.50704 * 109.47246 * 270.00432 * 5 4 3 7 7 H 1.07995 * 119.99707 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99711 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00148 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99688 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47628 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47383 * 120.00090 * 10 8 6 13 13 H 1.48509 * 109.47063 * 239.99778 * 10 8 6 14 14 C 1.34779 * 120.00351 * 82.76157 * 4 3 2 15 15 O 1.21491 * 120.00476 * 183.03187 * 14 4 3 16 16 C 1.48350 * 119.99750 * 3.02771 * 14 4 3 17 17 C 1.39301 * 119.56872 * 173.16497 * 16 14 4 18 18 C 1.38444 * 119.19661 * 179.97438 * 17 16 14 19 19 C 1.39909 * 118.35368 * 0.02562 * 18 17 16 20 20 C 1.47899 * 120.46938 * 179.97438 * 19 18 17 21 21 O 1.21449 * 119.99952 * 359.97438 * 20 19 18 22 22 O 1.34690 * 120.00146 * 179.97438 * 20 19 18 23 23 C 1.45196 * 117.00165 * 179.97438 * 22 20 19 24 24 C 1.53001 * 109.47309 * 180.02562 * 23 22 20 25 25 C 1.39777 * 119.06758 * 359.97438 * 19 18 17 26 26 N 1.31408 * 120.70520 * 359.97438 * 25 19 18 27 27 H 1.07996 * 120.00079 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99753 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99854 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47410 * 5.00114 * 3 2 1 31 31 H 1.09000 * 109.46959 * 245.00129 * 3 2 1 32 32 H 1.09001 * 109.46551 * 30.00266 * 5 4 3 33 33 H 1.08999 * 109.47245 * 149.99994 * 5 4 3 34 34 H 0.97000 * 120.00194 * 179.97438 * 9 8 6 35 35 H 1.08004 * 120.39612 * 0.25376 * 17 16 14 36 36 H 1.08004 * 120.82375 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47319 * 300.00209 * 23 22 20 38 38 H 1.09007 * 109.47058 * 60.00118 * 23 22 20 39 39 H 1.09003 * 109.47235 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.47239 * 299.99876 * 24 23 22 41 41 H 1.08993 * 109.47043 * 60.00486 * 24 23 22 42 42 H 1.07993 * 119.64389 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6150 2.0065 2.3754 6 6 3.0433 3.4502 2.3144 7 1 3.5476 3.8271 1.4369 8 6 2.7913 4.2895 3.3788 9 7 2.1768 3.8305 4.4471 10 14 3.3215 6.0790 3.3029 11 1 3.9874 6.3434 2.0022 12 1 2.1295 6.9546 3.4362 13 1 4.2697 6.3618 4.4104 14 6 4.1981 0.7357 1.0279 15 8 4.9474 0.7099 1.9839 16 6 4.6088 0.1109 -0.2534 17 6 5.9063 -0.3755 -0.3962 18 6 6.2812 -0.9575 -1.5951 19 6 5.3339 -1.0332 -2.6219 20 6 5.6843 -1.6450 -3.9220 21 8 6.8011 -2.0858 -4.1043 22 8 4.7647 -1.7133 -4.9038 23 6 5.1787 -2.3263 -6.1532 24 6 4.0095 -2.3129 -7.1399 25 6 4.0515 -0.5223 -2.4017 26 7 3.7349 0.0218 -1.2483 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.5338 1.9534 2.5028 33 1 3.1046 1.5176 3.2176 34 1 1.9999 4.4209 5.1961 35 1 6.6099 -0.3034 0.4200 36 1 7.2802 -1.3436 -1.7344 37 1 6.0145 -1.7667 -6.5732 38 1 5.4869 -3.3555 -5.9684 39 1 4.3201 -2.7736 -8.0778 40 1 3.1734 -2.8724 -6.7203 41 1 3.7018 -1.2838 -7.3247 42 1 3.3132 -0.5755 -3.1880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359399691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:41 Heat of formation + Delta-G solvation = -42.855225 kcal Electronic energy + Delta-G solvation = -26041.597781 eV Core-core repulsion = 22181.560713 eV Total energy + Delta-G solvation = -3860.037068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15133 -40.21669 -38.44047 -36.93962 -35.78824 -33.28346 -32.87838 -32.36346 -31.99483 -31.41093 -27.83964 -26.12957 -25.18781 -23.86337 -23.53564 -22.75536 -21.47878 -20.04878 -19.20052 -18.40732 -17.43431 -16.93375 -16.88108 -16.57803 -16.38001 -15.26641 -15.00139 -14.91212 -14.56975 -14.42332 -14.37097 -14.04276 -13.52715 -13.33239 -13.30912 -13.09159 -12.79026 -12.38311 -12.35302 -12.16185 -12.02434 -11.55876 -11.30159 -11.02275 -10.98855 -10.92470 -10.83049 -10.61623 -10.22050 -10.18840 -9.88271 -9.57169 -9.40082 -9.14941 -8.76795 -8.45094 -7.71739 -6.06338 -4.11500 0.06092 1.00433 2.09459 2.20900 2.64670 3.12950 3.29248 3.36826 3.40818 3.63648 3.94027 4.14215 4.32113 4.42760 4.52692 4.52998 4.57620 4.70914 4.81013 4.85983 5.02431 5.24607 5.28364 5.37193 5.42073 5.55200 5.56321 5.61662 5.72918 5.76028 6.01059 6.04375 6.18296 6.29115 6.57466 6.96747 7.00667 7.14389 7.34829 7.39990 7.47248 7.58261 7.89716 8.18915 8.29672 8.77902 8.96579 9.53485 11.01768 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.003006 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.531421 B = 9312.413806 C = 9829.001911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C 0.128 3.872 4 N -0.564 5.564 5 C 0.243 3.757 6 C -0.528 4.528 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.549 3.451 15 O -0.529 6.529 16 C 0.131 3.869 17 C -0.128 4.128 18 C -0.015 4.015 19 C -0.176 4.176 20 C 0.519 3.481 21 O -0.505 6.505 22 O -0.352 6.352 23 C 0.063 3.937 24 C -0.154 4.154 25 C 0.151 3.849 26 N -0.453 5.453 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -12.403 -20.754 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.152 4.152 3 C 0.005 3.995 4 N -0.292 5.292 5 C 0.124 3.876 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.333 3.667 15 O -0.406 6.406 16 C -0.007 4.007 17 C -0.149 4.149 18 C -0.041 4.041 19 C -0.179 4.179 20 C 0.363 3.637 21 O -0.394 6.394 22 O -0.269 6.269 23 C -0.010 4.010 24 C -0.211 4.211 25 C -0.009 4.009 26 N -0.165 5.165 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.676 -12.127 -19.957 23.413 hybrid contribution 1.147 0.521 -0.280 1.290 sum 2.823 -11.606 -20.237 23.499 Atomic orbital electron populations 1.23732 0.95877 1.01336 1.03131 1.23214 0.95535 0.98985 0.97495 1.21129 0.92747 0.94594 0.91064 1.48189 1.13575 1.50788 1.16695 1.19441 0.96308 0.91764 0.80066 1.21441 1.38499 0.94260 1.02430 0.92294 1.24930 0.95034 0.98988 0.95079 1.69944 1.41444 1.35922 1.05852 0.86431 0.78317 0.84456 0.78149 1.19775 1.20921 1.20859 1.17814 0.83056 0.80143 0.85726 1.90774 1.52286 1.59887 1.37650 1.22129 0.90814 0.93703 0.94044 1.22156 0.97176 0.97215 0.98350 1.21720 0.99446 0.92374 0.90542 1.20246 0.97659 1.07095 0.92910 1.20945 0.82640 0.76053 0.84097 1.90837 1.22074 1.44794 1.81648 1.86532 1.42851 1.73761 1.23718 1.23084 0.98653 0.98138 0.81139 1.21822 0.97870 1.03699 0.97679 1.23392 0.93419 0.89275 0.94806 1.68503 1.34102 1.13715 1.00130 0.89201 0.88581 0.88339 0.90408 0.87020 0.94444 0.93567 0.92705 0.82306 0.82931 0.91024 0.91036 0.90116 0.91267 0.91236 0.80835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 14.32 29.01 0.42 -2.38 16 2 C -0.13 -2.04 8.69 -36.03 -0.31 -2.35 16 3 C 0.13 2.22 5.45 -5.20 -0.03 2.20 16 4 N -0.56 -12.17 2.46 -177.36 -0.44 -12.61 16 5 C 0.24 6.33 5.15 -5.19 -0.03 6.31 16 6 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 10 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.55 11.54 7.59 -12.10 -0.09 11.45 16 15 O -0.53 -12.92 15.89 5.37 0.09 -12.83 16 16 C 0.13 2.11 6.63 -82.93 -0.55 1.56 16 17 C -0.13 -1.75 9.62 -39.11 -0.38 -2.13 16 18 C -0.02 -0.17 9.71 -38.88 -0.38 -0.55 16 19 C -0.18 -1.97 5.89 -104.74 -0.62 -2.59 16 20 C 0.52 5.77 7.91 34.69 0.27 6.05 16 21 O -0.50 -6.65 16.20 -19.23 -0.31 -6.96 16 22 O -0.35 -3.29 9.49 -40.47 -0.38 -3.68 16 23 C 0.06 0.45 6.19 37.16 0.23 0.68 16 24 C -0.15 -0.72 10.29 37.16 0.38 -0.34 16 25 C 0.15 1.68 10.78 -17.16 -0.18 1.49 16 26 N -0.45 -6.31 4.62 -9.47 -0.04 -6.35 16 27 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 29 H 0.10 1.50 7.52 -52.49 -0.39 1.11 16 30 H 0.08 1.39 7.67 -51.93 -0.40 1.00 16 31 H 0.11 1.80 5.26 -52.19 -0.27 1.52 16 32 H 0.04 0.99 8.07 -51.93 -0.42 0.58 16 33 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.16 2.11 7.64 -52.48 -0.40 1.71 16 36 H 0.15 1.48 7.73 -52.48 -0.41 1.07 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.17 1.47 7.62 -52.49 -0.40 1.07 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -33.03 367.50 -7.09 -40.12 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.57 Total: -0.25 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.68 Total: 5.92 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.26 Total: -44.54 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.61 Total: -23.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.03 -7.09 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.733 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds