Wall clock time and date at job start Tue Mar 31 2020 13:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99968 * 2 1 4 4 N 1.46498 * 109.46689 * 125.00151 * 3 2 1 5 5 C 1.46502 * 120.00197 * 262.75452 * 4 3 2 6 6 C 1.50704 * 109.47246 * 270.00432 * 5 4 3 7 7 H 1.07995 * 119.99707 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99711 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00148 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99688 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47628 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47383 * 120.00090 * 10 8 6 13 13 H 1.48509 * 109.47063 * 239.99778 * 10 8 6 14 14 C 1.34779 * 120.00351 * 82.76157 * 4 3 2 15 15 O 1.21491 * 120.00476 * 183.03187 * 14 4 3 16 16 C 1.48350 * 119.99750 * 3.02771 * 14 4 3 17 17 C 1.39301 * 119.56872 * 173.16497 * 16 14 4 18 18 C 1.38444 * 119.19661 * 179.97438 * 17 16 14 19 19 C 1.39909 * 118.35368 * 0.02562 * 18 17 16 20 20 C 1.47899 * 120.46938 * 179.97438 * 19 18 17 21 21 O 1.21449 * 119.99952 * 359.97438 * 20 19 18 22 22 O 1.34690 * 120.00146 * 179.97438 * 20 19 18 23 23 C 1.45196 * 117.00165 * 179.97438 * 22 20 19 24 24 C 1.53001 * 109.47309 * 180.02562 * 23 22 20 25 25 C 1.39777 * 119.06758 * 359.97438 * 19 18 17 26 26 N 1.31408 * 120.70520 * 359.97438 * 25 19 18 27 27 H 1.07996 * 120.00079 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99753 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99854 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47410 * 5.00114 * 3 2 1 31 31 H 1.09000 * 109.46959 * 245.00129 * 3 2 1 32 32 H 1.09001 * 109.46551 * 30.00266 * 5 4 3 33 33 H 1.08999 * 109.47245 * 149.99994 * 5 4 3 34 34 H 0.97000 * 120.00194 * 179.97438 * 9 8 6 35 35 H 1.08004 * 120.39612 * 0.25376 * 17 16 14 36 36 H 1.08004 * 120.82375 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.47319 * 300.00209 * 23 22 20 38 38 H 1.09007 * 109.47058 * 60.00118 * 23 22 20 39 39 H 1.09003 * 109.47235 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.47239 * 299.99876 * 24 23 22 41 41 H 1.08993 * 109.47043 * 60.00486 * 24 23 22 42 42 H 1.07993 * 119.64389 * 179.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6150 2.0065 2.3754 6 6 3.0433 3.4502 2.3144 7 1 3.5476 3.8271 1.4369 8 6 2.7913 4.2895 3.3788 9 7 2.1768 3.8305 4.4471 10 14 3.3215 6.0790 3.3029 11 1 3.9874 6.3434 2.0022 12 1 2.1295 6.9546 3.4362 13 1 4.2697 6.3618 4.4104 14 6 4.1981 0.7357 1.0279 15 8 4.9474 0.7099 1.9839 16 6 4.6088 0.1109 -0.2534 17 6 5.9063 -0.3755 -0.3962 18 6 6.2812 -0.9575 -1.5951 19 6 5.3339 -1.0332 -2.6219 20 6 5.6843 -1.6450 -3.9220 21 8 6.8011 -2.0858 -4.1043 22 8 4.7647 -1.7133 -4.9038 23 6 5.1787 -2.3263 -6.1532 24 6 4.0095 -2.3129 -7.1399 25 6 4.0515 -0.5223 -2.4017 26 7 3.7349 0.0218 -1.2483 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.5338 1.9534 2.5028 33 1 3.1046 1.5176 3.2176 34 1 1.9999 4.4209 5.1961 35 1 6.6099 -0.3034 0.4200 36 1 7.2802 -1.3436 -1.7344 37 1 6.0145 -1.7667 -6.5732 38 1 5.4869 -3.3555 -5.9684 39 1 4.3201 -2.7736 -8.0778 40 1 3.1734 -2.8724 -6.7203 41 1 3.7018 -1.2838 -7.3247 42 1 3.3132 -0.5755 -3.1880 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359399691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:40 Heat of formation + Delta-G solvation = -61.536150 kcal Electronic energy + Delta-G solvation = -26042.407847 eV Core-core repulsion = 22181.560713 eV Total energy + Delta-G solvation = -3860.847133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18600 -41.29366 -39.87430 -37.77070 -37.37262 -35.16404 -33.94393 -33.63043 -33.19953 -32.22069 -29.72385 -27.37605 -26.67531 -25.01474 -24.70518 -23.86274 -22.42291 -21.44251 -20.50821 -19.32758 -18.68059 -18.44361 -18.26051 -17.65674 -17.58710 -16.84048 -16.43914 -16.17806 -16.04594 -15.60288 -15.33226 -15.13732 -14.71093 -14.59849 -14.34305 -14.17420 -14.10344 -13.68123 -13.53021 -13.32568 -12.97328 -12.94279 -12.81010 -12.60258 -12.49722 -12.25147 -12.13473 -11.92164 -11.67020 -11.53050 -11.26763 -11.19811 -10.65442 -10.50555 -10.46033 -10.00739 -9.48121 -8.23090 -6.38118 -1.01238 0.02957 1.08014 1.37475 1.39550 1.42430 1.43869 1.52051 1.84213 2.18943 2.39771 2.69439 2.97986 3.07114 3.44230 3.56751 3.65608 3.77042 3.86270 4.06012 4.10135 4.19296 4.35543 4.38816 4.60357 4.62613 4.69817 4.76545 4.90667 4.98533 4.98583 5.03246 5.13137 5.13926 5.20711 5.37458 5.39947 5.51184 5.74707 5.82283 6.02714 6.04366 6.41225 6.53753 6.64535 6.70587 7.16216 7.34869 8.84614 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.003006 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.531421 B = 9312.413806 C = 9829.001911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.149 4.149 3 C 0.129 3.871 4 N -0.573 5.573 5 C 0.260 3.740 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.969 3.031 11 H -0.267 1.267 12 H -0.269 1.269 13 H -0.280 1.280 14 C 0.542 3.458 15 O -0.578 6.578 16 C 0.111 3.889 17 C -0.126 4.126 18 C -0.002 4.002 19 C -0.164 4.164 20 C 0.525 3.475 21 O -0.525 6.525 22 O -0.348 6.348 23 C 0.055 3.945 24 C -0.149 4.149 25 C 0.162 3.838 26 N -0.459 5.459 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.026 0.974 33 H 0.004 0.996 34 H 0.268 0.732 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -12.718 -23.821 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.168 4.168 3 C 0.008 3.992 4 N -0.300 5.300 5 C 0.139 3.861 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.793 3.207 11 H -0.191 1.191 12 H -0.194 1.194 13 H -0.206 1.206 14 C 0.329 3.671 15 O -0.458 6.458 16 C -0.026 4.026 17 C -0.146 4.146 18 C -0.028 4.028 19 C -0.168 4.168 20 C 0.370 3.630 21 O -0.415 6.415 22 O -0.265 6.265 23 C -0.018 4.018 24 C -0.205 4.205 25 C 0.002 3.998 26 N -0.170 5.170 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.044 0.956 33 H 0.022 0.978 34 H 0.077 0.923 35 H 0.174 0.826 36 H 0.192 0.808 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.394 -12.455 -23.071 26.255 hybrid contribution 1.195 0.497 0.532 1.400 sum 2.589 -11.958 -22.539 25.646 Atomic orbital electron populations 1.23956 0.95329 1.02569 1.00312 1.23018 0.95962 0.97819 1.00001 1.21311 0.92211 0.95610 0.90068 1.48175 1.14893 1.50669 1.16312 1.18879 0.94815 0.91179 0.81219 1.21674 1.38684 0.95328 1.02509 0.92821 1.25846 0.94835 1.03712 0.94542 1.70058 1.42240 1.37716 1.06547 0.85345 0.78292 0.78803 0.78229 1.19149 1.19394 1.20605 1.18494 0.82109 0.79379 0.87131 1.90723 1.53480 1.61712 1.39918 1.21355 0.92209 0.96183 0.92811 1.22114 0.96084 0.97176 0.99272 1.21881 1.00417 0.91092 0.89403 1.20377 0.97516 1.05879 0.93008 1.20789 0.82477 0.75530 0.84201 1.90841 1.22975 1.45709 1.82020 1.86530 1.42236 1.73563 1.24154 1.23386 0.99893 0.98080 0.80427 1.21845 0.96962 1.04022 0.97717 1.23819 0.94064 0.87845 0.94094 1.68313 1.33786 1.14401 1.00524 0.86820 0.88410 0.88176 0.91494 0.85444 0.95638 0.97822 0.92298 0.82645 0.80844 0.90905 0.90830 0.88224 0.91103 0.91157 0.77636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.76 14.32 67.78 0.97 -3.79 16 2 C -0.15 -4.46 8.69 25.64 0.22 -4.23 16 3 C 0.13 4.56 5.45 85.63 0.47 5.03 16 4 N -0.57 -25.83 2.46 -833.34 -2.05 -27.89 16 5 C 0.26 14.35 5.15 85.63 0.44 14.79 16 6 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.57 5.46 84.65 0.46 1.04 16 9 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 10 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 C 0.54 23.89 7.59 86.94 0.66 24.55 16 15 O -0.58 -30.06 15.89 -3.69 -0.06 -30.12 16 16 C 0.11 3.59 6.63 41.96 0.28 3.87 16 17 C -0.13 -3.38 9.62 22.57 0.22 -3.17 16 18 C 0.00 -0.05 9.71 22.72 0.22 0.17 16 19 C -0.16 -3.25 5.89 -19.94 -0.12 -3.37 16 20 C 0.53 10.23 7.91 70.38 0.56 10.79 16 21 O -0.52 -12.55 16.20 20.00 0.32 -12.22 16 22 O -0.35 -5.45 9.49 -56.00 -0.53 -5.99 16 23 C 0.06 0.63 6.19 71.98 0.45 1.08 16 24 C -0.15 -0.95 10.29 71.98 0.74 -0.21 16 25 C 0.16 3.16 10.78 85.13 0.92 4.08 16 26 N -0.46 -12.20 4.62 -183.86 -0.85 -13.05 16 27 H 0.11 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.10 2.50 7.84 -2.91 -0.02 2.48 16 29 H 0.10 2.98 7.52 -2.91 -0.02 2.96 16 30 H 0.07 2.45 7.67 -2.39 -0.02 2.43 16 31 H 0.13 4.04 5.26 -2.91 -0.02 4.02 16 32 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 33 H 0.00 0.23 7.38 -2.39 -0.02 0.21 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.16 4.25 7.64 -2.91 -0.02 4.23 16 36 H 0.17 2.93 7.73 -2.91 -0.02 2.90 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.21 2.66 7.62 -2.91 -0.02 2.63 16 Total: -1.00 -74.40 367.50 6.89 -67.50 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.02 Total: 11.32 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.72 Total: 19.22 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -2.62 Total: -96.72 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.27 Total: -48.33 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.40 6.89 -67.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.968 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds