Wall clock time and date at job start Tue Mar 31 2020 12:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 5 5 C 1.34773 * 119.99969 * 274.72265 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 C 1.52992 * 109.47274 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47278 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99953 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00439 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99907 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47043 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47048 * 119.99659 * 13 11 9 16 16 H 1.48496 * 109.47574 * 239.99910 * 13 11 9 17 17 C 1.50700 * 109.47433 * 239.99767 * 2 1 3 18 18 C 1.38282 * 119.90088 * 280.00157 * 17 2 1 19 19 C 1.38310 * 120.26068 * 179.97438 * 18 17 2 20 20 C 1.38402 * 119.87359 * 0.02562 * 19 18 17 21 21 C 1.39398 * 119.86269 * 0.04325 * 20 19 18 22 22 C 1.38283 * 119.90018 * 99.72632 * 17 2 1 23 23 N 1.40213 * 119.27667 * 179.97438 * 21 20 19 24 24 C 1.35094 * 118.98081 * 15.51135 * 23 21 20 25 25 O 1.21292 * 120.13727 * 181.69813 * 24 23 21 26 26 C 1.50754 * 119.72652 * 1.66446 * 24 23 21 27 27 O 1.35981 * 120.67464 * 180.12384 * 20 19 18 28 28 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 29 29 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 31 31 H 0.97005 * 119.99811 * 95.00317 * 4 2 1 32 32 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 33 33 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 34 34 H 1.09004 * 109.47116 * 299.99649 * 8 7 5 35 35 H 1.08993 * 109.47352 * 59.99893 * 8 7 5 36 36 H 0.97000 * 119.99666 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.86614 * 359.97438 * 18 17 2 38 38 H 1.07997 * 120.06457 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.09117 * 0.02562 * 22 17 2 40 40 H 0.97001 * 120.51415 * 195.52468 * 23 21 20 41 41 H 1.09010 * 109.44087 * 88.72631 * 26 24 23 42 42 H 1.09003 * 109.44817 * 208.65217 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1522 -0.0169 2.3558 6 8 1.8681 1.1610 2.4091 7 6 2.6550 -0.7271 3.5862 8 6 2.7122 0.2575 4.7558 9 6 3.2156 -0.4525 5.9861 10 1 3.4689 -1.5014 5.9385 11 6 3.3528 0.2367 7.1722 12 7 3.0448 1.5140 7.2300 13 14 3.9761 -0.6437 8.6974 14 1 4.2495 -2.0663 8.3707 15 1 5.2259 0.0058 9.1677 16 1 2.9478 -0.5706 9.7662 17 6 2.0324 -0.7104 -1.2304 18 6 2.0659 -2.0925 -1.2630 19 6 2.5251 -2.7522 -2.3886 20 6 2.9532 -2.0263 -3.4865 21 6 2.9207 -0.6331 -3.4530 22 6 2.4531 0.0216 -2.3256 23 7 3.3579 0.0901 -4.5719 24 6 3.4979 -0.5519 -5.7523 25 8 3.9041 0.0462 -6.7263 26 6 3.1482 -2.0147 -5.8538 27 8 3.4054 -2.6581 -4.6024 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2489 -1.6318 1.1527 32 1 1.9800 -1.5464 3.8341 33 1 3.6523 -1.1232 3.3951 34 1 3.3870 1.0770 4.5082 35 1 1.7148 0.6532 4.9469 36 1 3.1417 1.9989 8.0645 37 1 1.7322 -2.6589 -0.4062 38 1 2.5503 -3.8316 -2.4105 39 1 2.4224 1.1009 -2.2997 40 1 3.5569 1.0367 -4.4995 41 1 2.0927 -2.1188 -6.1056 42 1 3.7542 -2.4797 -6.6314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360001545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:48 Heat of formation + Delta-G solvation = -90.631144 kcal Electronic energy + Delta-G solvation = -25413.143900 eV Core-core repulsion = 21551.035113 eV Total energy + Delta-G solvation = -3862.108787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90547 -39.88500 -39.06836 -38.09526 -36.01919 -34.77888 -33.45765 -31.86521 -30.86048 -30.24121 -29.57237 -27.97832 -25.79661 -24.51713 -23.51888 -22.62581 -21.29254 -19.86874 -19.75024 -19.23737 -18.21498 -17.41463 -17.02879 -16.61030 -16.11469 -15.81203 -15.46763 -15.14233 -14.93321 -14.75909 -14.47914 -14.42720 -14.29185 -13.79567 -13.50215 -13.28317 -13.11848 -12.94168 -12.26886 -12.09124 -11.96727 -11.90426 -11.69760 -11.17721 -11.15415 -11.13518 -10.95100 -10.58738 -10.56186 -9.97415 -9.68224 -9.22254 -9.12903 -9.01731 -8.87539 -8.38095 -8.33206 -5.97228 -4.01497 0.57345 0.77718 1.78765 2.23457 2.77707 3.14977 3.23344 3.31895 3.38907 3.41868 3.45471 3.53575 4.13334 4.30826 4.38238 4.46764 4.55178 4.76858 4.78576 4.89209 5.16014 5.20971 5.30105 5.37933 5.42143 5.53892 5.59759 5.71402 5.81618 5.96640 6.10443 6.11324 6.18491 6.21825 6.23154 6.31156 6.69203 6.78725 6.87797 7.25697 7.73617 7.82742 7.85046 8.06025 8.37562 8.74002 9.07343 9.62216 11.13720 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.002135 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.362464 B =13110.785152 C =13313.532089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.096 0.904 4 N -0.739 5.739 5 C 0.512 3.488 6 O -0.533 6.533 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.890 5.890 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.073 4.073 18 C -0.102 4.102 19 C -0.100 4.100 20 C 0.073 3.927 21 C 0.095 3.905 22 C -0.110 4.110 23 N -0.658 5.658 24 C 0.491 3.509 25 O -0.513 6.513 26 C 0.051 3.949 27 O -0.302 6.302 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.396 0.604 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.417 0.583 41 H 0.100 0.900 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -9.708 -26.022 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.114 0.886 4 N -0.394 5.394 5 C 0.301 3.699 6 O -0.408 6.408 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.145 4.145 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.074 4.074 18 C -0.121 4.121 19 C -0.119 4.119 20 C 0.027 3.973 21 C -0.001 4.001 22 C -0.131 4.131 23 N -0.306 5.306 24 C 0.278 3.722 25 O -0.388 6.388 26 C -0.027 4.027 27 O -0.216 6.216 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.257 0.743 41 H 0.118 0.882 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.504 -8.694 -26.487 28.097 hybrid contribution 0.481 -0.193 0.775 0.932 sum -3.022 -8.887 -25.713 27.373 Atomic orbital electron populations 1.22170 0.94189 1.02414 1.02824 1.19674 0.94201 0.96909 0.81504 0.88598 1.46378 1.69630 1.13903 1.09537 1.21582 0.76256 0.87640 0.84435 1.90670 1.49002 1.16308 1.84794 1.21876 1.00951 1.01070 0.93126 1.18900 0.98357 0.93322 0.89509 1.21259 1.44255 0.96270 0.94665 0.92545 1.25032 0.95585 0.94853 0.98986 1.70011 1.48271 1.08035 1.26522 0.86537 0.78503 0.79761 0.83162 1.19748 1.21030 1.21035 1.19850 0.98659 0.93744 0.95156 1.20846 0.99792 0.93570 0.97888 1.20516 0.98997 1.00622 0.91773 1.18592 1.01261 0.88341 0.89143 1.17961 1.02553 0.90288 0.89256 1.20483 1.00492 1.00417 0.91728 1.43746 1.65396 1.13617 1.07823 1.21575 0.77384 0.90785 0.82480 1.90828 1.43580 1.68580 1.35763 1.23201 1.04736 0.88343 0.86447 1.86269 1.75624 1.47439 1.12272 0.91878 0.92249 0.91158 0.76852 0.90183 0.90206 0.95840 0.95812 0.93012 0.84550 0.83986 0.84512 0.74306 0.88176 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.46 37.16 0.35 -1.25 16 2 C 0.18 2.00 2.78 -69.08 -0.19 1.81 16 3 H 0.10 1.22 7.43 -51.93 -0.39 0.84 16 4 N -0.74 -9.29 5.02 -54.93 -0.28 -9.57 16 5 C 0.51 9.21 7.80 -10.98 -0.09 9.13 16 6 O -0.53 -11.87 15.64 5.56 0.09 -11.78 16 7 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 8 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 9 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 10 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C -0.07 -0.63 4.96 -104.59 -0.52 -1.15 16 18 C -0.10 -0.75 9.04 -39.54 -0.36 -1.11 16 19 C -0.10 -0.72 10.00 -39.49 -0.39 -1.12 16 20 C 0.07 0.61 6.44 -39.09 -0.25 0.36 16 21 C 0.09 0.79 6.54 -83.49 -0.55 0.24 16 22 C -0.11 -0.90 9.57 -39.47 -0.38 -1.28 16 23 N -0.66 -5.23 5.47 -9.66 -0.05 -5.29 16 24 C 0.49 4.30 7.94 -10.82 -0.09 4.22 16 25 O -0.51 -6.10 17.95 5.55 0.10 -6.00 16 26 C 0.05 0.31 7.17 36.03 0.26 0.56 16 27 O -0.30 -2.42 10.45 -19.68 -0.21 -2.62 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.40 3.84 6.86 -40.82 -0.28 3.56 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.14 0.78 6.90 -52.49 -0.36 0.42 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.14 0.93 8.04 -52.48 -0.42 0.51 16 40 H 0.42 2.77 8.89 -40.82 -0.36 2.40 16 41 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.15 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -36.20 360.28 -7.67 -43.86 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.58 Total: 0.90 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.89 Total: -4.92 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.41 Total: -41.33 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.02 Total: -20.40 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.20 -7.67 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360001545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.768 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds