Wall clock time and date at job start Tue Mar 31 2020 12:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 5 5 C 1.34773 * 119.99969 * 274.72265 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 C 1.52992 * 109.47274 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47278 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99953 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00439 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99907 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47043 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47048 * 119.99659 * 13 11 9 16 16 H 1.48496 * 109.47574 * 239.99910 * 13 11 9 17 17 C 1.50700 * 109.47433 * 239.99767 * 2 1 3 18 18 C 1.38282 * 119.90088 * 280.00157 * 17 2 1 19 19 C 1.38310 * 120.26068 * 179.97438 * 18 17 2 20 20 C 1.38402 * 119.87359 * 0.02562 * 19 18 17 21 21 C 1.39398 * 119.86269 * 0.04325 * 20 19 18 22 22 C 1.38283 * 119.90018 * 99.72632 * 17 2 1 23 23 N 1.40213 * 119.27667 * 179.97438 * 21 20 19 24 24 C 1.35094 * 118.98081 * 15.51135 * 23 21 20 25 25 O 1.21292 * 120.13727 * 181.69813 * 24 23 21 26 26 C 1.50754 * 119.72652 * 1.66446 * 24 23 21 27 27 O 1.35981 * 120.67464 * 180.12384 * 20 19 18 28 28 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 29 29 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 31 31 H 0.97005 * 119.99811 * 95.00317 * 4 2 1 32 32 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 33 33 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 34 34 H 1.09004 * 109.47116 * 299.99649 * 8 7 5 35 35 H 1.08993 * 109.47352 * 59.99893 * 8 7 5 36 36 H 0.97000 * 119.99666 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.86614 * 359.97438 * 18 17 2 38 38 H 1.07997 * 120.06457 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.09117 * 0.02562 * 22 17 2 40 40 H 0.97001 * 120.51415 * 195.52468 * 23 21 20 41 41 H 1.09010 * 109.44087 * 88.72631 * 26 24 23 42 42 H 1.09003 * 109.44817 * 208.65217 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1522 -0.0169 2.3558 6 8 1.8681 1.1610 2.4091 7 6 2.6550 -0.7271 3.5862 8 6 2.7122 0.2575 4.7558 9 6 3.2156 -0.4525 5.9861 10 1 3.4689 -1.5014 5.9385 11 6 3.3528 0.2367 7.1722 12 7 3.0448 1.5140 7.2300 13 14 3.9761 -0.6437 8.6974 14 1 4.2495 -2.0663 8.3707 15 1 5.2259 0.0058 9.1677 16 1 2.9478 -0.5706 9.7662 17 6 2.0324 -0.7104 -1.2304 18 6 2.0659 -2.0925 -1.2630 19 6 2.5251 -2.7522 -2.3886 20 6 2.9532 -2.0263 -3.4865 21 6 2.9207 -0.6331 -3.4530 22 6 2.4531 0.0216 -2.3256 23 7 3.3579 0.0901 -4.5719 24 6 3.4979 -0.5519 -5.7523 25 8 3.9041 0.0462 -6.7263 26 6 3.1482 -2.0147 -5.8538 27 8 3.4054 -2.6581 -4.6024 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2489 -1.6318 1.1527 32 1 1.9800 -1.5464 3.8341 33 1 3.6523 -1.1232 3.3951 34 1 3.3870 1.0770 4.5082 35 1 1.7148 0.6532 4.9469 36 1 3.1417 1.9989 8.0645 37 1 1.7322 -2.6589 -0.4062 38 1 2.5503 -3.8316 -2.4105 39 1 2.4224 1.1009 -2.2997 40 1 3.5569 1.0367 -4.4995 41 1 2.0927 -2.1188 -6.1056 42 1 3.7542 -2.4797 -6.6314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360001545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:47 Heat of formation + Delta-G solvation = -117.390422 kcal Electronic energy + Delta-G solvation = -25414.304269 eV Core-core repulsion = 21551.035113 eV Total energy + Delta-G solvation = -3863.269156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.51864 -40.97030 -39.98761 -38.86791 -36.84696 -35.73008 -35.45999 -33.27304 -32.24382 -30.95821 -30.36302 -28.58185 -27.67802 -25.32536 -24.32256 -23.79966 -22.62799 -21.14370 -20.49402 -19.92227 -18.91907 -18.80724 -18.01269 -17.57684 -17.25395 -16.97573 -16.46088 -16.36251 -16.05385 -15.91386 -15.45960 -15.32651 -14.97115 -14.71168 -14.66216 -14.25575 -14.14194 -13.96150 -13.87830 -13.42964 -13.18731 -12.85764 -12.81814 -12.56511 -12.42358 -12.29301 -11.95283 -11.87062 -11.83148 -11.59906 -11.25238 -11.24166 -10.69074 -10.55826 -10.10688 -9.68366 -9.01693 -8.16157 -6.29623 -0.05191 0.16966 1.15842 1.43926 1.44945 1.58209 1.64077 1.77646 2.22957 2.26514 2.46102 2.64673 2.90526 3.17161 3.47354 3.63023 3.98993 4.02992 4.12402 4.15683 4.19582 4.32382 4.37146 4.48454 4.56497 4.61880 4.71411 4.74979 4.92487 4.96499 5.06317 5.14148 5.28448 5.35592 5.41831 5.52274 5.54579 5.64995 5.67634 5.70190 5.88943 6.20468 6.20639 6.62538 6.65348 6.89800 7.39456 7.41593 8.96610 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.002135 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.362464 B =13110.785152 C =13313.532089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.184 3.816 3 H 0.073 0.927 4 N -0.713 5.713 5 C 0.515 3.485 6 O -0.586 6.586 7 C -0.120 4.120 8 C 0.041 3.959 9 C -0.540 4.540 10 H 0.077 0.923 11 C -0.009 4.009 12 N -0.938 5.938 13 Si 0.973 3.027 14 H -0.252 1.252 15 H -0.282 1.282 16 H -0.281 1.281 17 C -0.081 4.081 18 C -0.095 4.095 19 C -0.097 4.097 20 C 0.067 3.933 21 C 0.086 3.914 22 C -0.112 4.112 23 N -0.657 5.657 24 C 0.487 3.513 25 O -0.552 6.552 26 C 0.052 3.948 27 O -0.308 6.308 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.104 0.896 34 H -0.019 1.019 35 H -0.017 1.017 36 H 0.262 0.738 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.142 0.858 40 H 0.420 0.580 41 H 0.125 0.875 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 -13.254 -26.680 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 H 0.091 0.909 4 N -0.368 5.368 5 C 0.303 3.697 6 O -0.466 6.466 7 C -0.160 4.160 8 C 0.003 3.997 9 C -0.578 4.578 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.797 3.203 14 H -0.175 1.175 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.082 4.082 18 C -0.114 4.114 19 C -0.115 4.115 20 C 0.020 3.980 21 C -0.010 4.010 22 C -0.133 4.133 23 N -0.304 5.304 24 C 0.276 3.724 25 O -0.430 6.430 26 C -0.025 4.025 27 O -0.222 6.222 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.254 0.746 32 H 0.125 0.875 33 H 0.122 0.878 34 H -0.001 1.001 35 H 0.001 0.999 36 H 0.071 0.929 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.160 0.840 40 H 0.260 0.740 41 H 0.143 0.857 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.343 -12.312 -27.177 30.023 hybrid contribution 0.413 0.919 0.898 1.350 sum -2.930 -11.394 -26.279 28.792 Atomic orbital electron populations 1.22119 0.93370 1.03455 1.02144 1.19678 0.94815 0.95990 0.81589 0.90892 1.46054 1.67724 1.14555 1.08447 1.21278 0.75998 0.86848 0.85557 1.90660 1.51635 1.18569 1.85717 1.21644 1.03233 0.99787 0.91346 1.18692 0.94779 0.93721 0.92459 1.21765 1.43584 0.97232 0.95175 0.90508 1.26139 0.95771 0.95578 1.03128 1.70189 1.49867 1.10190 1.27618 0.85287 0.77601 0.79273 0.78161 1.17498 1.20819 1.20729 1.19597 1.00133 0.94372 0.94125 1.21053 0.98863 0.92848 0.98620 1.20762 0.98074 1.01709 0.90994 1.18859 1.01009 0.88372 0.89718 1.18008 1.03148 0.90565 0.89248 1.20549 1.00188 1.00880 0.91665 1.43786 1.64889 1.13916 1.07810 1.22117 0.76489 0.91866 0.81947 1.90809 1.45555 1.69658 1.36941 1.23429 1.06668 0.86301 0.86109 1.86261 1.75773 1.47523 1.12689 0.90177 0.90279 0.94243 0.74634 0.87502 0.87832 1.00079 0.99874 0.92947 0.82501 0.81751 0.84000 0.74029 0.85712 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.46 71.98 0.68 -2.27 16 2 C 0.18 3.86 2.78 44.24 0.12 3.98 16 3 H 0.07 1.91 7.43 -2.39 -0.02 1.89 16 4 N -0.71 -16.82 5.02 -446.09 -2.24 -19.06 16 5 C 0.51 18.56 7.80 87.66 0.68 19.24 16 6 O -0.59 -27.41 15.64 -3.03 -0.05 -27.45 16 7 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 8 C 0.04 2.24 4.26 29.84 0.13 2.37 16 9 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 10 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 11 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 12 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 13 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 14 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 C -0.08 -1.24 4.96 -19.84 -0.10 -1.34 16 18 C -0.09 -1.07 9.04 22.30 0.20 -0.87 16 19 C -0.10 -1.05 10.00 22.33 0.22 -0.83 16 20 C 0.07 0.94 6.44 22.59 0.15 1.09 16 21 C 0.09 1.29 6.54 38.14 0.25 1.54 16 22 C -0.11 -1.68 9.57 22.34 0.21 -1.47 16 23 N -0.66 -9.95 5.47 -302.69 -1.66 -11.61 16 24 C 0.49 8.09 7.94 87.62 0.70 8.79 16 25 O -0.55 -13.06 17.95 -3.07 -0.06 -13.11 16 26 C 0.05 0.51 7.17 71.25 0.51 1.02 16 27 O -0.31 -4.13 10.45 -93.34 -0.98 -5.10 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.42 6.69 6.86 -92.70 -0.64 6.05 16 32 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 34 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 35 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.16 1.09 6.90 -2.91 -0.02 1.07 16 38 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.14 1.89 8.04 -2.91 -0.02 1.87 16 40 H 0.42 5.54 8.89 -92.71 -0.82 4.72 16 41 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.17 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -82.71 360.28 1.56 -81.15 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -0.39 Total: 11.44 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.62 Total: -3.20 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -3.61 Total: -89.63 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.08 Total: -45.67 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -82.71 1.56 -81.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360001545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.241 kcal (2) G-P(sol) polarization free energy of solvation -82.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds