Wall clock time and date at job start Tue Mar 31 2020 12:14:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50701 * 109.47360 * 2 1
4 4 O 1.21276 * 119.99795 * 359.97438 * 3 2 1
5 5 N 1.34777 * 120.00081 * 179.97438 * 3 2 1
6 6 C 1.39291 * 119.99710 * 174.62236 * 5 3 2
7 7 C 1.38850 * 120.16511 * 335.00819 * 6 5 3
8 8 C 1.38023 * 120.06513 * 179.74564 * 7 6 5
9 9 C 1.38560 * 120.40512 * 0.55965 * 8 7 6
10 10 C 1.37797 * 120.33126 * 359.69800 * 9 8 7
11 11 C 1.39684 * 119.92217 * 0.02562 * 10 9 8
12 12 C 1.47521 * 120.19799 * 180.02562 * 11 10 9
13 13 O 1.21590 * 119.99964 * 155.04531 * 12 11 10
14 14 N 1.34771 * 120.00353 * 335.04218 * 12 11 10
15 15 C 1.47073 * 136.05480 * 354.47974 * 14 12 11
16 16 C 1.53240 * 88.08303 * 207.19996 * 15 14 12
17 17 O 1.42899 * 114.19658 * 87.72460 * 16 15 14
18 18 C 1.50698 * 114.32651 * 220.46898 * 16 15 14
19 19 H 1.08005 * 119.99765 * 93.75967 * 18 16 15
20 20 C 1.37874 * 120.00009 * 273.75764 * 18 16 15
21 21 N 1.31505 * 120.00047 * 359.97438 * 20 18 16
22 22 Si 1.86801 * 119.99768 * 179.97438 * 20 18 16
23 23 H 1.48495 * 109.47177 * 0.02562 * 22 20 18
24 24 H 1.48501 * 109.46957 * 120.00069 * 22 20 18
25 25 H 1.48500 * 109.47063 * 239.99921 * 22 20 18
26 26 C 1.47070 * 136.06105 * 174.84624 * 14 12 11
27 27 H 1.09001 * 109.46918 * 300.00444 * 1 2 3
28 28 H 1.09006 * 109.46588 * 59.99836 * 1 2 3
29 29 H 1.08994 * 109.47094 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.46630 * 240.00019 * 2 1 3
31 31 H 1.08996 * 109.46942 * 119.99806 * 2 1 3
32 32 H 0.96994 * 119.99961 * 354.35218 * 5 3 2
33 33 H 1.07993 * 119.96650 * 0.02683 * 7 6 5
34 34 H 1.08003 * 119.79485 * 180.27641 * 8 7 6
35 35 H 1.08008 * 119.83266 * 179.71425 * 9 8 7
36 36 H 1.08000 * 120.03794 * 180.02562 * 10 9 8
37 37 H 1.09001 * 113.46486 * 321.93240 * 15 14 12
38 38 H 1.09002 * 113.46955 * 92.37554 * 15 14 12
39 39 H 0.96702 * 113.99737 * 86.30964 * 17 16 15
40 40 H 0.97005 * 120.00083 * 180.02562 * 21 20 18
41 41 H 1.09003 * 113.46276 * 267.62768 * 26 14 12
42 42 H 1.08995 * 113.46394 * 38.00307 * 26 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 1.2443 2.3426 -0.0005
5 7 3.3575 1.6670 0.0005
6 6 3.8228 2.9751 -0.1125
7 6 3.0394 3.9437 -0.7256
8 6 3.5003 5.2404 -0.8318
9 6 4.7493 5.5832 -0.3397
10 6 5.5428 4.6339 0.2670
11 6 5.0876 3.3188 0.3870
12 6 5.9318 2.2977 1.0360
13 8 5.4195 1.3205 1.5468
14 7 7.2708 2.4480 1.0626
15 6 8.2416 3.3952 0.4939
16 6 9.2815 2.2702 0.5278
17 8 9.2922 1.4472 -0.6403
18 6 10.6569 2.7090 0.9600
19 1 10.9478 2.6300 1.9972
20 6 11.5438 3.2111 0.0315
21 7 11.1897 3.3067 -1.2314
22 14 13.2484 3.7556 0.5675
23 1 13.3979 3.5462 2.0299
24 1 14.2724 2.9577 -0.1536
25 1 13.4302 5.1953 0.2519
26 6 8.4048 1.7334 1.6678
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 3.9870 0.9338 0.0836
33 1 2.0666 3.6834 -1.1156
34 1 2.8854 5.9914 -1.3055
35 1 5.1027 6.5997 -0.4319
36 1 6.5154 4.9064 0.6493
37 1 7.9898 3.7214 -0.5152
38 1 8.4787 4.2256 1.1591
39 1 9.8454 1.7880 -1.3565
40 1 11.8138 3.6597 -1.8847
41 1 8.6857 2.1167 2.6488
42 1 8.2911 0.6495 1.6558
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000360666321.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:49
Heat of formation + Delta-G solvation = -51.360151 kcal
Electronic energy + Delta-G solvation = -26706.708690 eV
Core-core repulsion = 22846.302821 eV
Total energy + Delta-G solvation = -3860.405869 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 318.141 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.85440 -39.67803 -38.35531 -37.19624 -34.80220 -34.04929 -33.02261 -32.25652
-31.32702 -29.60593 -28.53765 -25.64648 -25.27727 -24.82172 -23.39657 -22.14067
-20.42144 -20.10989 -18.84047 -17.61218 -17.42638 -17.17608 -16.63986 -15.99660
-15.69378 -15.21309 -14.89434 -14.79398 -14.41589 -14.27201 -13.98672 -13.76247
-13.59741 -13.19353 -12.72639 -12.65886 -12.48371 -12.40403 -12.10294 -11.93055
-11.81570 -11.63749 -11.45413 -11.32860 -11.13477 -11.05423 -10.54337 -10.52356
-10.32925 -9.84136 -9.67901 -9.30307 -8.86590 -8.83708 -8.48458 -8.04972
-7.89991 -6.46593 -4.57193 1.00747 1.40855 2.57029 3.02572 3.09391
3.19182 3.21364 3.23200 3.42982 4.02265 4.13084 4.53381 4.73084
4.83537 4.89037 4.92216 4.97737 5.10197 5.32999 5.40063 5.48826
5.53253 5.58958 5.61768 5.74408 5.83240 5.96104 6.02759 6.07757
6.23092 6.32924 6.34941 6.38777 6.49978 6.55067 6.58269 6.61833
7.01985 7.04627 7.42961 7.56804 7.73241 8.04985 8.35053 8.46945
8.59982 9.14554 9.42017 10.60119
Molecular weight = 318.14amu
Principal moments of inertia in cm(-1)
A = 0.021730 B = 0.003272 C = 0.003000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1288.219336 B = 8555.472204 C = 9330.243931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.144 4.144
3 C 0.512 3.488
4 O -0.527 6.527
5 N -0.656 5.656
6 C 0.202 3.798
7 C -0.147 4.147
8 C -0.079 4.079
9 C -0.150 4.150
10 C -0.062 4.062
11 C -0.157 4.157
12 C 0.581 3.419
13 O -0.568 6.568
14 N -0.624 5.624
15 C 0.069 3.931
16 C 0.241 3.759
17 O -0.571 6.571
18 C -0.534 4.534
19 H 0.074 0.926
20 C 0.072 3.928
21 N -0.897 5.897
22 Si 0.909 3.091
23 H -0.270 1.270
24 H -0.280 1.280
25 H -0.280 1.280
26 C 0.107 3.893
27 H 0.062 0.938
28 H 0.061 0.939
29 H 0.062 0.938
30 H 0.097 0.903
31 H 0.099 0.901
32 H 0.422 0.578
33 H 0.149 0.851
34 H 0.127 0.873
35 H 0.127 0.873
36 H 0.135 0.865
37 H 0.069 0.931
38 H 0.083 0.917
39 H 0.394 0.606
40 H 0.274 0.726
41 H 0.088 0.912
42 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.821 0.370 -0.526 12.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.184 4.184
3 C 0.301 3.699
4 O -0.404 6.404
5 N -0.302 5.302
6 C 0.104 3.896
7 C -0.167 4.167
8 C -0.098 4.098
9 C -0.169 4.169
10 C -0.081 4.081
11 C -0.163 4.163
12 C 0.372 3.628
13 O -0.451 6.451
14 N -0.355 5.355
15 C -0.054 4.054
16 C 0.199 3.801
17 O -0.385 6.385
18 C -0.572 4.572
19 H 0.092 0.908
20 C -0.131 4.131
21 N -0.537 5.537
22 Si 0.736 3.264
23 H -0.194 1.194
24 H -0.206 1.206
25 H -0.206 1.206
26 C -0.015 4.015
27 H 0.081 0.919
28 H 0.080 0.920
29 H 0.081 0.919
30 H 0.115 0.885
31 H 0.117 0.883
32 H 0.263 0.737
33 H 0.166 0.834
34 H 0.145 0.855
35 H 0.145 0.855
36 H 0.153 0.847
37 H 0.087 0.913
38 H 0.101 0.899
39 H 0.251 0.749
40 H 0.084 0.916
41 H 0.106 0.894
42 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -14.207 0.078 -0.104 14.207
hybrid contribution 1.700 0.515 -0.061 1.777
sum -12.507 0.593 -0.165 12.522
Atomic orbital electron populations
1.21532 0.92745 1.01709 1.03342 1.21649 0.98682 0.93067 1.05032
1.20996 0.81468 0.92404 0.74994 1.90637 1.55381 1.46217 1.48150
1.43722 1.08442 1.07928 1.70096 1.17706 0.92181 0.85089 0.94585
1.21330 1.01562 0.92676 1.01180 1.21181 0.95449 0.95803 0.97401
1.21057 0.94850 0.99749 1.01218 1.21390 0.99500 0.91331 0.95882
1.19729 0.95462 0.95165 1.05924 1.17587 0.80267 0.85392 0.79579
1.90626 1.72684 1.32043 1.49711 1.49605 1.03139 1.31904 1.50831
1.24292 0.87051 0.96192 0.97899 1.19485 0.91224 0.85711 0.83684
1.86042 1.73386 1.51504 1.27520 1.21453 0.97525 1.42493 0.95729
0.90826 1.25082 0.99340 0.93923 0.94713 1.69264 1.36758 1.45959
1.01742 0.86254 0.82718 0.78312 0.79111 1.19401 1.20599 1.20626
1.23387 0.81967 0.98013 0.98147 0.91918 0.91958 0.91910 0.88475
0.88312 0.73675 0.83387 0.85538 0.85483 0.84688 0.91276 0.89861
0.74889 0.91559 0.89445 0.91333
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16
2 C -0.14 -1.41 6.42 -27.88 -0.18 -1.59 16
3 C 0.51 7.14 7.63 -10.99 -0.08 7.05 16
4 O -0.53 -8.51 13.14 5.56 0.07 -8.44 16
5 N -0.66 -10.09 4.76 -9.69 -0.05 -10.14 16
6 C 0.20 3.38 6.41 -83.48 -0.54 2.85 16
7 C -0.15 -2.22 8.70 -39.43 -0.34 -2.56 16
8 C -0.08 -1.03 10.03 -39.54 -0.40 -1.43 16
9 C -0.15 -1.99 10.02 -39.62 -0.40 -2.39 16
10 C -0.06 -0.97 8.85 -39.20 -0.35 -1.32 16
11 C -0.16 -2.79 5.84 -104.81 -0.61 -3.41 16
12 C 0.58 11.70 7.66 -12.48 -0.10 11.60 16
13 O -0.57 -12.17 15.27 5.29 0.08 -12.09 16
14 N -0.62 -12.74 3.64 -186.59 -0.68 -13.42 16
15 C 0.07 1.40 5.53 -8.63 -0.05 1.35 16
16 C 0.24 5.54 1.57 -91.39 -0.14 5.40 16
17 O -0.57 -14.29 13.54 -35.23 -0.48 -14.77 16
18 C -0.53 -12.82 8.69 -34.44 -0.30 -13.12 16
19 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16
20 C 0.07 1.73 5.39 -17.82 -0.10 1.63 16
21 N -0.90 -21.95 11.01 55.43 0.61 -21.34 16
22 Si 0.91 18.79 29.54 -169.99 -5.02 13.77 16
23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16
24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16
25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16
26 C 0.11 2.23 8.04 -8.50 -0.07 2.16 16
27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16
28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16
29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16
31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16
32 H 0.42 6.53 6.59 -40.82 -0.27 6.26 16
33 H 0.15 2.22 5.79 -52.49 -0.30 1.92 16
34 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16
35 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16
36 H 0.14 2.07 5.73 -52.49 -0.30 1.77 16
37 H 0.07 1.44 7.81 -51.93 -0.41 1.04 16
38 H 0.08 1.59 7.87 -51.93 -0.41 1.18 16
39 H 0.39 10.01 6.32 45.56 0.29 10.29 16
40 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16
41 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16
42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16
LS Contribution 351.43 15.07 5.30 5.30
Total: -1.00 -28.53 351.43 -8.21 -36.74
By element:
Atomic # 1 Polarization: 23.78 SS G_CDS: -4.74 Total: 19.04 kcal
Atomic # 6 Polarization: 8.66 SS G_CDS: -3.30 Total: 5.36 kcal
Atomic # 7 Polarization: -44.79 SS G_CDS: -0.12 Total: -44.91 kcal
Atomic # 8 Polarization: -34.98 SS G_CDS: -0.32 Total: -35.30 kcal
Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -28.53 -8.21 -36.74 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360666321.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.618 kcal
(2) G-P(sol) polarization free energy of solvation -28.532 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds