Wall clock time and date at job start Tue Mar 31 2020 12:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47360 * 2 1 4 4 O 1.21276 * 119.99795 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.39291 * 119.99710 * 174.62236 * 5 3 2 7 7 C 1.38850 * 120.16511 * 335.00819 * 6 5 3 8 8 C 1.38023 * 120.06513 * 179.74564 * 7 6 5 9 9 C 1.38560 * 120.40512 * 0.55965 * 8 7 6 10 10 C 1.37797 * 120.33126 * 359.69800 * 9 8 7 11 11 C 1.39684 * 119.92217 * 0.02562 * 10 9 8 12 12 C 1.47521 * 120.19799 * 180.02562 * 11 10 9 13 13 O 1.21590 * 119.99964 * 155.04531 * 12 11 10 14 14 N 1.34771 * 120.00353 * 335.04218 * 12 11 10 15 15 C 1.47073 * 136.05480 * 354.47974 * 14 12 11 16 16 C 1.53240 * 88.08303 * 207.19996 * 15 14 12 17 17 O 1.42899 * 114.19658 * 87.72460 * 16 15 14 18 18 C 1.50698 * 114.32651 * 220.46898 * 16 15 14 19 19 H 1.08005 * 119.99765 * 93.75967 * 18 16 15 20 20 C 1.37874 * 120.00009 * 273.75764 * 18 16 15 21 21 N 1.31505 * 120.00047 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99768 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47177 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46957 * 120.00069 * 22 20 18 25 25 H 1.48500 * 109.47063 * 239.99921 * 22 20 18 26 26 C 1.47070 * 136.06105 * 174.84624 * 14 12 11 27 27 H 1.09001 * 109.46918 * 300.00444 * 1 2 3 28 28 H 1.09006 * 109.46588 * 59.99836 * 1 2 3 29 29 H 1.08994 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46630 * 240.00019 * 2 1 3 31 31 H 1.08996 * 109.46942 * 119.99806 * 2 1 3 32 32 H 0.96994 * 119.99961 * 354.35218 * 5 3 2 33 33 H 1.07993 * 119.96650 * 0.02683 * 7 6 5 34 34 H 1.08003 * 119.79485 * 180.27641 * 8 7 6 35 35 H 1.08008 * 119.83266 * 179.71425 * 9 8 7 36 36 H 1.08000 * 120.03794 * 180.02562 * 10 9 8 37 37 H 1.09001 * 113.46486 * 321.93240 * 15 14 12 38 38 H 1.09002 * 113.46955 * 92.37554 * 15 14 12 39 39 H 0.96702 * 113.99737 * 86.30964 * 17 16 15 40 40 H 0.97005 * 120.00083 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.46276 * 267.62768 * 26 14 12 42 42 H 1.08995 * 113.46394 * 38.00307 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8228 2.9751 -0.1125 7 6 3.0394 3.9437 -0.7256 8 6 3.5003 5.2404 -0.8318 9 6 4.7493 5.5832 -0.3397 10 6 5.5428 4.6339 0.2670 11 6 5.0876 3.3188 0.3870 12 6 5.9318 2.2977 1.0360 13 8 5.4195 1.3205 1.5468 14 7 7.2708 2.4480 1.0626 15 6 8.2416 3.3952 0.4939 16 6 9.2815 2.2702 0.5278 17 8 9.2922 1.4472 -0.6403 18 6 10.6569 2.7090 0.9600 19 1 10.9478 2.6300 1.9972 20 6 11.5438 3.2111 0.0315 21 7 11.1897 3.3067 -1.2314 22 14 13.2484 3.7556 0.5675 23 1 13.3979 3.5462 2.0299 24 1 14.2724 2.9577 -0.1536 25 1 13.4302 5.1953 0.2519 26 6 8.4048 1.7334 1.6678 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9870 0.9338 0.0836 33 1 2.0666 3.6834 -1.1156 34 1 2.8854 5.9914 -1.3055 35 1 5.1027 6.5997 -0.4319 36 1 6.5154 4.9064 0.6493 37 1 7.9898 3.7214 -0.5152 38 1 8.4787 4.2256 1.1591 39 1 9.8454 1.7880 -1.3565 40 1 11.8138 3.6597 -1.8847 41 1 8.6857 2.1167 2.6488 42 1 8.2911 0.6495 1.6558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360666321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:49 Heat of formation + Delta-G solvation = -51.360151 kcal Electronic energy + Delta-G solvation = -26706.708690 eV Core-core repulsion = 22846.302821 eV Total energy + Delta-G solvation = -3860.405869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85440 -39.67803 -38.35531 -37.19624 -34.80220 -34.04929 -33.02261 -32.25652 -31.32702 -29.60593 -28.53765 -25.64648 -25.27727 -24.82172 -23.39657 -22.14067 -20.42144 -20.10989 -18.84047 -17.61218 -17.42638 -17.17608 -16.63986 -15.99660 -15.69378 -15.21309 -14.89434 -14.79398 -14.41589 -14.27201 -13.98672 -13.76247 -13.59741 -13.19353 -12.72639 -12.65886 -12.48371 -12.40403 -12.10294 -11.93055 -11.81570 -11.63749 -11.45413 -11.32860 -11.13477 -11.05423 -10.54337 -10.52356 -10.32925 -9.84136 -9.67901 -9.30307 -8.86590 -8.83708 -8.48458 -8.04972 -7.89991 -6.46593 -4.57193 1.00747 1.40855 2.57029 3.02572 3.09391 3.19182 3.21364 3.23200 3.42982 4.02265 4.13084 4.53381 4.73084 4.83537 4.89037 4.92216 4.97737 5.10197 5.32999 5.40063 5.48826 5.53253 5.58958 5.61768 5.74408 5.83240 5.96104 6.02759 6.07757 6.23092 6.32924 6.34941 6.38777 6.49978 6.55067 6.58269 6.61833 7.01985 7.04627 7.42961 7.56804 7.73241 8.04985 8.35053 8.46945 8.59982 9.14554 9.42017 10.60119 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.003272 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.219336 B = 8555.472204 C = 9330.243931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.512 3.488 4 O -0.527 6.527 5 N -0.656 5.656 6 C 0.202 3.798 7 C -0.147 4.147 8 C -0.079 4.079 9 C -0.150 4.150 10 C -0.062 4.062 11 C -0.157 4.157 12 C 0.581 3.419 13 O -0.568 6.568 14 N -0.624 5.624 15 C 0.069 3.931 16 C 0.241 3.759 17 O -0.571 6.571 18 C -0.534 4.534 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.909 3.091 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.107 3.893 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.422 0.578 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.394 0.606 40 H 0.274 0.726 41 H 0.088 0.912 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 0.370 -0.526 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.404 6.404 5 N -0.302 5.302 6 C 0.104 3.896 7 C -0.167 4.167 8 C -0.098 4.098 9 C -0.169 4.169 10 C -0.081 4.081 11 C -0.163 4.163 12 C 0.372 3.628 13 O -0.451 6.451 14 N -0.355 5.355 15 C -0.054 4.054 16 C 0.199 3.801 17 O -0.385 6.385 18 C -0.572 4.572 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.015 4.015 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.263 0.737 33 H 0.166 0.834 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.251 0.749 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.207 0.078 -0.104 14.207 hybrid contribution 1.700 0.515 -0.061 1.777 sum -12.507 0.593 -0.165 12.522 Atomic orbital electron populations 1.21532 0.92745 1.01709 1.03342 1.21649 0.98682 0.93067 1.05032 1.20996 0.81468 0.92404 0.74994 1.90637 1.55381 1.46217 1.48150 1.43722 1.08442 1.07928 1.70096 1.17706 0.92181 0.85089 0.94585 1.21330 1.01562 0.92676 1.01180 1.21181 0.95449 0.95803 0.97401 1.21057 0.94850 0.99749 1.01218 1.21390 0.99500 0.91331 0.95882 1.19729 0.95462 0.95165 1.05924 1.17587 0.80267 0.85392 0.79579 1.90626 1.72684 1.32043 1.49711 1.49605 1.03139 1.31904 1.50831 1.24292 0.87051 0.96192 0.97899 1.19485 0.91224 0.85711 0.83684 1.86042 1.73386 1.51504 1.27520 1.21453 0.97525 1.42493 0.95729 0.90826 1.25082 0.99340 0.93923 0.94713 1.69264 1.36758 1.45959 1.01742 0.86254 0.82718 0.78312 0.79111 1.19401 1.20599 1.20626 1.23387 0.81967 0.98013 0.98147 0.91918 0.91958 0.91910 0.88475 0.88312 0.73675 0.83387 0.85538 0.85483 0.84688 0.91276 0.89861 0.74889 0.91559 0.89445 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 2 C -0.14 -1.41 6.42 -27.88 -0.18 -1.59 16 3 C 0.51 7.14 7.63 -10.99 -0.08 7.05 16 4 O -0.53 -8.51 13.14 5.56 0.07 -8.44 16 5 N -0.66 -10.09 4.76 -9.69 -0.05 -10.14 16 6 C 0.20 3.38 6.41 -83.48 -0.54 2.85 16 7 C -0.15 -2.22 8.70 -39.43 -0.34 -2.56 16 8 C -0.08 -1.03 10.03 -39.54 -0.40 -1.43 16 9 C -0.15 -1.99 10.02 -39.62 -0.40 -2.39 16 10 C -0.06 -0.97 8.85 -39.20 -0.35 -1.32 16 11 C -0.16 -2.79 5.84 -104.81 -0.61 -3.41 16 12 C 0.58 11.70 7.66 -12.48 -0.10 11.60 16 13 O -0.57 -12.17 15.27 5.29 0.08 -12.09 16 14 N -0.62 -12.74 3.64 -186.59 -0.68 -13.42 16 15 C 0.07 1.40 5.53 -8.63 -0.05 1.35 16 16 C 0.24 5.54 1.57 -91.39 -0.14 5.40 16 17 O -0.57 -14.29 13.54 -35.23 -0.48 -14.77 16 18 C -0.53 -12.82 8.69 -34.44 -0.30 -13.12 16 19 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 20 C 0.07 1.73 5.39 -17.82 -0.10 1.63 16 21 N -0.90 -21.95 11.01 55.43 0.61 -21.34 16 22 Si 0.91 18.79 29.54 -169.99 -5.02 13.77 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 C 0.11 2.23 8.04 -8.50 -0.07 2.16 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.42 6.53 6.59 -40.82 -0.27 6.26 16 33 H 0.15 2.22 5.79 -52.49 -0.30 1.92 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.14 2.07 5.73 -52.49 -0.30 1.77 16 37 H 0.07 1.44 7.81 -51.93 -0.41 1.04 16 38 H 0.08 1.59 7.87 -51.93 -0.41 1.18 16 39 H 0.39 10.01 6.32 45.56 0.29 10.29 16 40 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 41 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -28.53 351.43 -8.21 -36.74 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -4.74 Total: 19.04 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.30 Total: 5.36 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.12 Total: -44.91 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.32 Total: -35.30 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.53 -8.21 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360666321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.618 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds