Wall clock time and date at job start Tue Mar 31 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47360 * 2 1 4 4 O 1.21276 * 119.99795 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.39291 * 119.99710 * 174.62236 * 5 3 2 7 7 C 1.38850 * 120.16511 * 335.00819 * 6 5 3 8 8 C 1.38023 * 120.06513 * 179.74564 * 7 6 5 9 9 C 1.38560 * 120.40512 * 0.55965 * 8 7 6 10 10 C 1.37797 * 120.33126 * 359.69800 * 9 8 7 11 11 C 1.39684 * 119.92217 * 0.02562 * 10 9 8 12 12 C 1.47521 * 120.19799 * 180.02562 * 11 10 9 13 13 O 1.21590 * 119.99964 * 155.04531 * 12 11 10 14 14 N 1.34771 * 120.00353 * 335.04218 * 12 11 10 15 15 C 1.47073 * 136.05480 * 354.47974 * 14 12 11 16 16 C 1.53240 * 88.08303 * 207.19996 * 15 14 12 17 17 O 1.42899 * 114.19658 * 87.72460 * 16 15 14 18 18 C 1.50698 * 114.32651 * 220.46898 * 16 15 14 19 19 H 1.08005 * 119.99765 * 93.75967 * 18 16 15 20 20 C 1.37874 * 120.00009 * 273.75764 * 18 16 15 21 21 N 1.31505 * 120.00047 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 119.99768 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47177 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46957 * 120.00069 * 22 20 18 25 25 H 1.48500 * 109.47063 * 239.99921 * 22 20 18 26 26 C 1.47070 * 136.06105 * 174.84624 * 14 12 11 27 27 H 1.09001 * 109.46918 * 300.00444 * 1 2 3 28 28 H 1.09006 * 109.46588 * 59.99836 * 1 2 3 29 29 H 1.08994 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46630 * 240.00019 * 2 1 3 31 31 H 1.08996 * 109.46942 * 119.99806 * 2 1 3 32 32 H 0.96994 * 119.99961 * 354.35218 * 5 3 2 33 33 H 1.07993 * 119.96650 * 0.02683 * 7 6 5 34 34 H 1.08003 * 119.79485 * 180.27641 * 8 7 6 35 35 H 1.08008 * 119.83266 * 179.71425 * 9 8 7 36 36 H 1.08000 * 120.03794 * 180.02562 * 10 9 8 37 37 H 1.09001 * 113.46486 * 321.93240 * 15 14 12 38 38 H 1.09002 * 113.46955 * 92.37554 * 15 14 12 39 39 H 0.96702 * 113.99737 * 86.30964 * 17 16 15 40 40 H 0.97005 * 120.00083 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.46276 * 267.62768 * 26 14 12 42 42 H 1.08995 * 113.46394 * 38.00307 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8228 2.9751 -0.1125 7 6 3.0394 3.9437 -0.7256 8 6 3.5003 5.2404 -0.8318 9 6 4.7493 5.5832 -0.3397 10 6 5.5428 4.6339 0.2670 11 6 5.0876 3.3188 0.3870 12 6 5.9318 2.2977 1.0360 13 8 5.4195 1.3205 1.5468 14 7 7.2708 2.4480 1.0626 15 6 8.2416 3.3952 0.4939 16 6 9.2815 2.2702 0.5278 17 8 9.2922 1.4472 -0.6403 18 6 10.6569 2.7090 0.9600 19 1 10.9478 2.6300 1.9972 20 6 11.5438 3.2111 0.0315 21 7 11.1897 3.3067 -1.2314 22 14 13.2484 3.7556 0.5675 23 1 13.3979 3.5462 2.0299 24 1 14.2724 2.9577 -0.1536 25 1 13.4302 5.1953 0.2519 26 6 8.4048 1.7334 1.6678 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9870 0.9338 0.0836 33 1 2.0666 3.6834 -1.1156 34 1 2.8854 5.9914 -1.3055 35 1 5.1027 6.5997 -0.4319 36 1 6.5154 4.9064 0.6493 37 1 7.9898 3.7214 -0.5152 38 1 8.4787 4.2256 1.1591 39 1 9.8454 1.7880 -1.3565 40 1 11.8138 3.6597 -1.8847 41 1 8.6857 2.1167 2.6488 42 1 8.2911 0.6495 1.6558 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360666321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:48 Heat of formation + Delta-G solvation = -70.322964 kcal Electronic energy + Delta-G solvation = -26707.530979 eV Core-core repulsion = 22846.302821 eV Total energy + Delta-G solvation = -3861.228158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10273 -41.15823 -39.67671 -38.69582 -36.13651 -35.69152 -34.12272 -33.86612 -32.62050 -30.74569 -30.13778 -27.33488 -26.92357 -25.79721 -24.67599 -23.26177 -21.96888 -21.23836 -20.38125 -19.37438 -18.62468 -18.29124 -18.13568 -17.40761 -17.02787 -16.77934 -16.40707 -16.03174 -15.88910 -15.59216 -15.22882 -15.08108 -14.87331 -14.58695 -14.25091 -14.10081 -13.83470 -13.63306 -13.41309 -13.24715 -13.00856 -12.82884 -12.77732 -12.70818 -12.51940 -12.22449 -12.15003 -12.08812 -11.71316 -11.37649 -11.01925 -10.85457 -10.65898 -10.24423 -10.07678 -9.61863 -9.15949 -8.27377 -6.44254 -0.21954 0.25570 1.46632 1.49045 1.51899 1.61642 1.71232 1.87260 2.01598 2.41155 2.80117 2.94714 3.37931 3.55139 3.69951 3.83565 4.04686 4.11152 4.12943 4.18961 4.32932 4.38289 4.40324 4.45245 4.61087 4.64770 4.72686 4.78300 4.90156 4.94479 4.96985 5.00872 5.13695 5.22298 5.25789 5.29754 5.39888 5.45292 5.73484 5.90392 5.91574 6.27759 6.62077 6.75488 6.94049 7.02444 7.29758 7.48304 8.78945 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.003272 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.219336 B = 8555.472204 C = 9330.243931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.140 4.140 3 C 0.507 3.493 4 O -0.552 6.552 5 N -0.661 5.661 6 C 0.186 3.814 7 C -0.157 4.157 8 C -0.065 4.065 9 C -0.143 4.143 10 C -0.069 4.069 11 C -0.185 4.185 12 C 0.576 3.424 13 O -0.588 6.588 14 N -0.627 5.627 15 C 0.086 3.914 16 C 0.220 3.780 17 O -0.586 6.586 18 C -0.550 4.550 19 H 0.076 0.924 20 C 0.033 3.967 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.277 1.277 26 C 0.108 3.892 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.419 0.581 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.389 0.611 40 H 0.276 0.724 41 H 0.107 0.893 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 1.569 -0.600 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.179 4.179 3 C 0.298 3.702 4 O -0.431 6.431 5 N -0.306 5.306 6 C 0.088 3.912 7 C -0.178 4.178 8 C -0.084 4.084 9 C -0.162 4.162 10 C -0.088 4.088 11 C -0.191 4.191 12 C 0.369 3.631 13 O -0.473 6.473 14 N -0.357 5.357 15 C -0.037 4.037 16 C 0.178 3.822 17 O -0.399 6.399 18 C -0.588 4.588 19 H 0.094 0.906 20 C -0.168 4.168 21 N -0.557 5.557 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.202 1.202 26 C -0.014 4.014 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.260 0.740 33 H 0.165 0.835 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.649 1.273 -0.171 14.705 hybrid contribution 1.775 0.143 -0.064 1.782 sum -12.874 1.416 -0.235 12.954 Atomic orbital electron populations 1.21535 0.92003 1.03110 1.02353 1.21756 0.99167 0.90389 1.06583 1.21786 0.80679 0.93909 0.73858 1.90610 1.55698 1.47449 1.49326 1.43867 1.09004 1.07532 1.70222 1.17994 0.92198 0.86078 0.94950 1.21479 1.01439 0.93433 1.01418 1.21630 0.95477 0.95578 0.95699 1.21428 0.94414 1.00711 0.99621 1.21529 0.99974 0.91066 0.96275 1.19665 0.95918 0.95478 1.08025 1.18047 0.80145 0.85664 0.79266 1.90596 1.72946 1.33089 1.50635 1.49592 1.03329 1.31794 1.51026 1.24062 0.85963 0.95726 0.97912 1.19765 0.91922 0.86906 0.83579 1.86028 1.73346 1.52464 1.28111 1.21667 0.98285 1.42821 0.95993 0.90605 1.25754 1.02325 0.93954 0.94746 1.69326 1.37724 1.46254 1.02414 0.85315 0.78677 0.77803 0.78673 1.19066 1.20952 1.20217 1.23391 0.81988 0.97574 0.98448 0.93261 0.92598 0.89266 0.86235 0.87208 0.74043 0.83510 0.81830 0.82087 0.84712 0.91975 0.88321 0.75466 0.91353 0.87537 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.20 71.98 0.66 -1.54 16 2 C -0.14 -2.56 6.42 29.85 0.19 -2.37 16 3 C 0.51 14.04 7.63 87.66 0.67 14.71 16 4 O -0.55 -17.81 13.14 -3.02 -0.04 -17.85 16 5 N -0.66 -20.57 4.76 -302.95 -1.44 -22.02 16 6 C 0.19 6.22 6.41 38.60 0.25 6.46 16 7 C -0.16 -4.58 8.70 22.37 0.19 -4.39 16 8 C -0.07 -1.52 10.03 22.30 0.22 -1.30 16 9 C -0.14 -3.42 10.02 22.24 0.22 -3.19 16 10 C -0.07 -2.10 8.85 22.51 0.20 -1.90 16 11 C -0.19 -6.59 5.84 -19.99 -0.12 -6.71 16 12 C 0.58 23.55 7.66 86.69 0.66 24.21 16 13 O -0.59 -25.75 15.27 -4.00 -0.06 -25.81 16 14 N -0.63 -25.77 3.64 -862.99 -3.14 -28.91 16 15 C 0.09 3.51 5.53 83.10 0.46 3.97 16 16 C 0.22 10.17 1.57 -11.29 -0.02 10.15 16 17 O -0.59 -29.96 13.54 -148.98 -2.02 -31.97 16 18 C -0.55 -26.24 8.69 25.60 0.22 -26.02 16 19 H 0.08 3.50 7.81 -2.91 -0.02 3.48 16 20 C 0.03 1.55 5.39 84.66 0.46 2.01 16 21 N -0.92 -44.76 11.01 21.44 0.24 -44.53 16 22 Si 0.97 37.95 29.54 68.60 2.03 39.98 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 26 C 0.11 4.55 8.04 83.18 0.67 5.22 16 27 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 28 H 0.05 0.99 8.10 -2.38 -0.02 0.98 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.42 13.29 6.59 -92.71 -0.61 12.68 16 33 H 0.15 4.31 5.79 -2.91 -0.02 4.29 16 34 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 36 H 0.14 4.00 5.73 -2.91 -0.02 3.98 16 37 H 0.06 2.60 7.81 -2.39 -0.02 2.58 16 38 H 0.10 3.68 7.87 -2.39 -0.02 3.66 16 39 H 0.39 20.23 6.32 -74.06 -0.47 19.76 16 40 H 0.28 12.77 8.31 -92.70 -0.77 12.00 16 41 H 0.11 4.00 8.10 -2.39 -0.02 3.98 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -61.65 351.43 0.50 -61.15 By element: Atomic # 1 Polarization: 50.65 SS G_CDS: -0.01 Total: 50.65 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 4.95 Total: 19.32 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -4.35 Total: -95.46 kcal Atomic # 8 Polarization: -73.52 SS G_CDS: -2.12 Total: -75.64 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -61.65 0.50 -61.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360666321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.176 kcal (2) G-P(sol) polarization free energy of solvation -61.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds