Wall clock time and date at job start Tue Mar 31 2020 12:14:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50701 * 109.47360 * 2 1
4 4 O 1.21276 * 119.99795 * 359.97438 * 3 2 1
5 5 N 1.34777 * 120.00081 * 179.97438 * 3 2 1
6 6 C 1.39291 * 119.99710 * 174.62236 * 5 3 2
7 7 C 1.38850 * 120.16511 * 335.00819 * 6 5 3
8 8 C 1.38023 * 120.06513 * 179.74564 * 7 6 5
9 9 C 1.38560 * 120.40512 * 0.55965 * 8 7 6
10 10 C 1.37797 * 120.33126 * 359.69800 * 9 8 7
11 11 C 1.39684 * 119.92217 * 0.02562 * 10 9 8
12 12 C 1.47521 * 120.19799 * 180.02562 * 11 10 9
13 13 O 1.21590 * 119.99964 * 155.04531 * 12 11 10
14 14 N 1.34771 * 120.00353 * 335.04218 * 12 11 10
15 15 C 1.47073 * 136.05480 * 354.47974 * 14 12 11
16 16 C 1.53240 * 88.08303 * 207.19996 * 15 14 12
17 17 O 1.42899 * 114.19658 * 87.72460 * 16 15 14
18 18 C 1.50698 * 114.32651 * 220.46898 * 16 15 14
19 19 H 1.08005 * 119.99765 * 93.75967 * 18 16 15
20 20 C 1.37874 * 120.00009 * 273.75764 * 18 16 15
21 21 N 1.31505 * 120.00047 * 359.97438 * 20 18 16
22 22 Si 1.86801 * 119.99768 * 179.97438 * 20 18 16
23 23 H 1.48495 * 109.47177 * 0.02562 * 22 20 18
24 24 H 1.48501 * 109.46957 * 120.00069 * 22 20 18
25 25 H 1.48500 * 109.47063 * 239.99921 * 22 20 18
26 26 C 1.47070 * 136.06105 * 174.84624 * 14 12 11
27 27 H 1.09001 * 109.46918 * 300.00444 * 1 2 3
28 28 H 1.09006 * 109.46588 * 59.99836 * 1 2 3
29 29 H 1.08994 * 109.47094 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.46630 * 240.00019 * 2 1 3
31 31 H 1.08996 * 109.46942 * 119.99806 * 2 1 3
32 32 H 0.96994 * 119.99961 * 354.35218 * 5 3 2
33 33 H 1.07993 * 119.96650 * 0.02683 * 7 6 5
34 34 H 1.08003 * 119.79485 * 180.27641 * 8 7 6
35 35 H 1.08008 * 119.83266 * 179.71425 * 9 8 7
36 36 H 1.08000 * 120.03794 * 180.02562 * 10 9 8
37 37 H 1.09001 * 113.46486 * 321.93240 * 15 14 12
38 38 H 1.09002 * 113.46955 * 92.37554 * 15 14 12
39 39 H 0.96702 * 113.99737 * 86.30964 * 17 16 15
40 40 H 0.97005 * 120.00083 * 180.02562 * 21 20 18
41 41 H 1.09003 * 113.46276 * 267.62768 * 26 14 12
42 42 H 1.08995 * 113.46394 * 38.00307 * 26 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 1.2443 2.3426 -0.0005
5 7 3.3575 1.6670 0.0005
6 6 3.8228 2.9751 -0.1125
7 6 3.0394 3.9437 -0.7256
8 6 3.5003 5.2404 -0.8318
9 6 4.7493 5.5832 -0.3397
10 6 5.5428 4.6339 0.2670
11 6 5.0876 3.3188 0.3870
12 6 5.9318 2.2977 1.0360
13 8 5.4195 1.3205 1.5468
14 7 7.2708 2.4480 1.0626
15 6 8.2416 3.3952 0.4939
16 6 9.2815 2.2702 0.5278
17 8 9.2922 1.4472 -0.6403
18 6 10.6569 2.7090 0.9600
19 1 10.9478 2.6300 1.9972
20 6 11.5438 3.2111 0.0315
21 7 11.1897 3.3067 -1.2314
22 14 13.2484 3.7556 0.5675
23 1 13.3979 3.5462 2.0299
24 1 14.2724 2.9577 -0.1536
25 1 13.4302 5.1953 0.2519
26 6 8.4048 1.7334 1.6678
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 3.9870 0.9338 0.0836
33 1 2.0666 3.6834 -1.1156
34 1 2.8854 5.9914 -1.3055
35 1 5.1027 6.5997 -0.4319
36 1 6.5154 4.9064 0.6493
37 1 7.9898 3.7214 -0.5152
38 1 8.4787 4.2256 1.1591
39 1 9.8454 1.7880 -1.3565
40 1 11.8138 3.6597 -1.8847
41 1 8.6857 2.1167 2.6488
42 1 8.2911 0.6495 1.6558
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000360666321.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:48
Heat of formation + Delta-G solvation = -70.322964 kcal
Electronic energy + Delta-G solvation = -26707.530979 eV
Core-core repulsion = 22846.302821 eV
Total energy + Delta-G solvation = -3861.228158 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 318.141 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.10273 -41.15823 -39.67671 -38.69582 -36.13651 -35.69152 -34.12272 -33.86612
-32.62050 -30.74569 -30.13778 -27.33488 -26.92357 -25.79721 -24.67599 -23.26177
-21.96888 -21.23836 -20.38125 -19.37438 -18.62468 -18.29124 -18.13568 -17.40761
-17.02787 -16.77934 -16.40707 -16.03174 -15.88910 -15.59216 -15.22882 -15.08108
-14.87331 -14.58695 -14.25091 -14.10081 -13.83470 -13.63306 -13.41309 -13.24715
-13.00856 -12.82884 -12.77732 -12.70818 -12.51940 -12.22449 -12.15003 -12.08812
-11.71316 -11.37649 -11.01925 -10.85457 -10.65898 -10.24423 -10.07678 -9.61863
-9.15949 -8.27377 -6.44254 -0.21954 0.25570 1.46632 1.49045 1.51899
1.61642 1.71232 1.87260 2.01598 2.41155 2.80117 2.94714 3.37931
3.55139 3.69951 3.83565 4.04686 4.11152 4.12943 4.18961 4.32932
4.38289 4.40324 4.45245 4.61087 4.64770 4.72686 4.78300 4.90156
4.94479 4.96985 5.00872 5.13695 5.22298 5.25789 5.29754 5.39888
5.45292 5.73484 5.90392 5.91574 6.27759 6.62077 6.75488 6.94049
7.02444 7.29758 7.48304 8.78945
Molecular weight = 318.14amu
Principal moments of inertia in cm(-1)
A = 0.021730 B = 0.003272 C = 0.003000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1288.219336 B = 8555.472204 C = 9330.243931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.140 4.140
3 C 0.507 3.493
4 O -0.552 6.552
5 N -0.661 5.661
6 C 0.186 3.814
7 C -0.157 4.157
8 C -0.065 4.065
9 C -0.143 4.143
10 C -0.069 4.069
11 C -0.185 4.185
12 C 0.576 3.424
13 O -0.588 6.588
14 N -0.627 5.627
15 C 0.086 3.914
16 C 0.220 3.780
17 O -0.586 6.586
18 C -0.550 4.550
19 H 0.076 0.924
20 C 0.033 3.967
21 N -0.916 5.916
22 Si 0.970 3.030
23 H -0.267 1.267
24 H -0.284 1.284
25 H -0.277 1.277
26 C 0.108 3.892
27 H 0.048 0.952
28 H 0.055 0.945
29 H 0.089 0.911
30 H 0.120 0.880
31 H 0.110 0.890
32 H 0.419 0.581
33 H 0.147 0.853
34 H 0.164 0.836
35 H 0.162 0.838
36 H 0.135 0.865
37 H 0.062 0.938
38 H 0.099 0.901
39 H 0.389 0.611
40 H 0.276 0.724
41 H 0.107 0.893
42 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.248 1.569 -0.600 13.354
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.179 4.179
3 C 0.298 3.702
4 O -0.431 6.431
5 N -0.306 5.306
6 C 0.088 3.912
7 C -0.178 4.178
8 C -0.084 4.084
9 C -0.162 4.162
10 C -0.088 4.088
11 C -0.191 4.191
12 C 0.369 3.631
13 O -0.473 6.473
14 N -0.357 5.357
15 C -0.037 4.037
16 C 0.178 3.822
17 O -0.399 6.399
18 C -0.588 4.588
19 H 0.094 0.906
20 C -0.168 4.168
21 N -0.557 5.557
22 Si 0.795 3.205
23 H -0.191 1.191
24 H -0.210 1.210
25 H -0.202 1.202
26 C -0.014 4.014
27 H 0.067 0.933
28 H 0.074 0.926
29 H 0.107 0.893
30 H 0.138 0.862
31 H 0.128 0.872
32 H 0.260 0.740
33 H 0.165 0.835
34 H 0.182 0.818
35 H 0.179 0.821
36 H 0.153 0.847
37 H 0.080 0.920
38 H 0.117 0.883
39 H 0.245 0.755
40 H 0.086 0.914
41 H 0.125 0.875
42 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -14.649 1.273 -0.171 14.705
hybrid contribution 1.775 0.143 -0.064 1.782
sum -12.874 1.416 -0.235 12.954
Atomic orbital electron populations
1.21535 0.92003 1.03110 1.02353 1.21756 0.99167 0.90389 1.06583
1.21786 0.80679 0.93909 0.73858 1.90610 1.55698 1.47449 1.49326
1.43867 1.09004 1.07532 1.70222 1.17994 0.92198 0.86078 0.94950
1.21479 1.01439 0.93433 1.01418 1.21630 0.95477 0.95578 0.95699
1.21428 0.94414 1.00711 0.99621 1.21529 0.99974 0.91066 0.96275
1.19665 0.95918 0.95478 1.08025 1.18047 0.80145 0.85664 0.79266
1.90596 1.72946 1.33089 1.50635 1.49592 1.03329 1.31794 1.51026
1.24062 0.85963 0.95726 0.97912 1.19765 0.91922 0.86906 0.83579
1.86028 1.73346 1.52464 1.28111 1.21667 0.98285 1.42821 0.95993
0.90605 1.25754 1.02325 0.93954 0.94746 1.69326 1.37724 1.46254
1.02414 0.85315 0.78677 0.77803 0.78673 1.19066 1.20952 1.20217
1.23391 0.81988 0.97574 0.98448 0.93261 0.92598 0.89266 0.86235
0.87208 0.74043 0.83510 0.81830 0.82087 0.84712 0.91975 0.88321
0.75466 0.91353 0.87537 0.92398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.20 9.20 71.98 0.66 -1.54 16
2 C -0.14 -2.56 6.42 29.85 0.19 -2.37 16
3 C 0.51 14.04 7.63 87.66 0.67 14.71 16
4 O -0.55 -17.81 13.14 -3.02 -0.04 -17.85 16
5 N -0.66 -20.57 4.76 -302.95 -1.44 -22.02 16
6 C 0.19 6.22 6.41 38.60 0.25 6.46 16
7 C -0.16 -4.58 8.70 22.37 0.19 -4.39 16
8 C -0.07 -1.52 10.03 22.30 0.22 -1.30 16
9 C -0.14 -3.42 10.02 22.24 0.22 -3.19 16
10 C -0.07 -2.10 8.85 22.51 0.20 -1.90 16
11 C -0.19 -6.59 5.84 -19.99 -0.12 -6.71 16
12 C 0.58 23.55 7.66 86.69 0.66 24.21 16
13 O -0.59 -25.75 15.27 -4.00 -0.06 -25.81 16
14 N -0.63 -25.77 3.64 -862.99 -3.14 -28.91 16
15 C 0.09 3.51 5.53 83.10 0.46 3.97 16
16 C 0.22 10.17 1.57 -11.29 -0.02 10.15 16
17 O -0.59 -29.96 13.54 -148.98 -2.02 -31.97 16
18 C -0.55 -26.24 8.69 25.60 0.22 -26.02 16
19 H 0.08 3.50 7.81 -2.91 -0.02 3.48 16
20 C 0.03 1.55 5.39 84.66 0.46 2.01 16
21 N -0.92 -44.76 11.01 21.44 0.24 -44.53 16
22 Si 0.97 37.95 29.54 68.60 2.03 39.98 16
23 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16
24 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16
25 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16
26 C 0.11 4.55 8.04 83.18 0.67 5.22 16
27 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16
28 H 0.05 0.99 8.10 -2.38 -0.02 0.98 16
29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16
30 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16
31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16
32 H 0.42 13.29 6.59 -92.71 -0.61 12.68 16
33 H 0.15 4.31 5.79 -2.91 -0.02 4.29 16
34 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16
35 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16
36 H 0.14 4.00 5.73 -2.91 -0.02 3.98 16
37 H 0.06 2.60 7.81 -2.39 -0.02 2.58 16
38 H 0.10 3.68 7.87 -2.39 -0.02 3.66 16
39 H 0.39 20.23 6.32 -74.06 -0.47 19.76 16
40 H 0.28 12.77 8.31 -92.70 -0.77 12.00 16
41 H 0.11 4.00 8.10 -2.39 -0.02 3.98 16
42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16
Total: -1.00 -61.65 351.43 0.50 -61.15
By element:
Atomic # 1 Polarization: 50.65 SS G_CDS: -0.01 Total: 50.65 kcal
Atomic # 6 Polarization: 14.37 SS G_CDS: 4.95 Total: 19.32 kcal
Atomic # 7 Polarization: -91.11 SS G_CDS: -4.35 Total: -95.46 kcal
Atomic # 8 Polarization: -73.52 SS G_CDS: -2.12 Total: -75.64 kcal
Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal
Total: -61.65 0.50 -61.15 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360666321.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.176 kcal
(2) G-P(sol) polarization free energy of solvation -61.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.824 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.323 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds