Wall clock time and date at job start Tue Mar 31 2020 13:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47161 * 2 1 4 4 C 1.46503 * 120.00231 * 274.81554 * 3 2 1 5 5 C 1.50700 * 109.47165 * 263.66629 * 4 3 2 6 6 H 1.07998 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99833 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99782 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46860 * 90.00648 * 9 7 5 11 11 H 1.48499 * 109.47295 * 210.00230 * 9 7 5 12 12 H 1.48501 * 109.47478 * 330.00811 * 9 7 5 13 13 C 1.34773 * 120.00187 * 94.82102 * 3 2 1 14 14 O 1.21367 * 119.99733 * 354.61645 * 13 3 2 15 15 C 1.49349 * 120.00497 * 174.61902 * 13 3 2 16 16 O 1.21377 * 119.99674 * 0.21028 * 15 13 3 17 17 N 1.34773 * 120.00461 * 180.20038 * 15 13 3 18 18 C 1.39717 * 120.00442 * 184.88895 * 17 15 13 19 19 C 1.39093 * 120.08898 * 326.51862 * 18 17 15 20 20 C 1.38113 * 119.67656 * 180.02562 * 19 18 17 21 21 C 1.38022 * 120.43656 * 0.18051 * 20 19 18 22 22 C 1.39330 * 120.40360 * 0.02679 * 21 20 19 23 23 C 1.38379 * 120.08795 * 146.53124 * 18 17 15 24 24 C 1.51934 * 132.11777 * 358.83021 * 23 18 17 25 25 C 1.54699 * 101.78482 * 195.82806 * 24 23 18 26 26 O 1.36149 * 129.85257 * 179.52362 * 22 21 20 27 27 H 1.08995 * 109.46930 * 299.99909 * 1 2 3 28 28 H 1.09007 * 109.46817 * 59.99931 * 1 2 3 29 29 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47265 * 240.00124 * 2 1 3 31 31 H 1.08998 * 109.47193 * 120.00532 * 2 1 3 32 32 H 1.09006 * 109.46743 * 23.66692 * 4 3 2 33 33 H 1.09003 * 109.47026 * 143.66287 * 4 3 2 34 34 H 0.97006 * 119.99945 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00040 * 4.89943 * 17 15 13 36 36 H 1.08000 * 120.16383 * 359.97036 * 19 18 17 37 37 H 1.08002 * 119.78136 * 180.18840 * 20 19 18 38 38 H 1.08001 * 119.79959 * 180.02562 * 21 20 19 39 39 H 1.09003 * 110.89853 * 77.76037 * 24 23 18 40 40 H 1.09000 * 111.10504 * 313.98711 * 24 23 18 41 41 H 1.09001 * 110.75333 * 216.53977 * 25 24 23 42 42 H 1.09004 * 110.75075 * 93.36169 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1621 2.1073 -1.2642 5 6 3.5895 2.0131 -1.7382 6 1 4.3169 1.4672 -1.1557 7 6 3.9668 2.6237 -2.9155 8 7 3.0811 3.2888 -3.6244 9 14 5.7363 2.5074 -3.5026 10 1 5.8942 1.3081 -4.3640 11 1 6.0807 3.7245 -4.2806 12 1 6.6407 2.3971 -2.3299 13 6 2.3354 1.9838 1.1630 14 8 2.1249 1.4189 2.2163 15 6 2.9458 3.3469 1.1557 16 8 3.1528 3.9135 0.1025 17 7 3.2667 3.9479 2.3186 18 6 3.7422 5.2616 2.3182 19 6 4.5229 5.7203 1.2624 20 6 4.9889 7.0204 1.2710 21 6 4.6879 7.8642 2.3209 22 6 3.9103 7.4147 3.3861 23 6 3.4378 6.1099 3.3683 24 6 2.6079 5.9171 4.6263 25 6 2.3866 7.3776 5.0857 26 8 3.5085 8.0693 4.5103 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5012 1.6691 -2.0121 33 1 1.8974 3.1540 -1.1142 34 1 3.3465 3.7187 -4.4525 35 1 3.1676 3.4683 3.1559 36 1 4.7644 5.0628 0.4404 37 1 5.5928 7.3792 0.4506 38 1 5.0573 8.8790 2.3169 39 1 3.1631 5.3528 5.3756 40 1 1.6586 5.4318 4.3996 41 1 2.4068 7.4477 6.1733 42 1 1.4481 7.7682 4.6923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361925539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:32 Heat of formation + Delta-G solvation = -53.139356 kcal Electronic energy + Delta-G solvation = -27073.672485 eV Core-core repulsion = 23213.189464 eV Total energy + Delta-G solvation = -3860.483021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22001 -40.21171 -38.44899 -36.94381 -35.71398 -34.28427 -32.67854 -32.14601 -30.54057 -29.52866 -28.75818 -27.09374 -24.97930 -23.46999 -23.10863 -22.69564 -21.79035 -20.79020 -19.25027 -17.86748 -17.25138 -16.63711 -16.51388 -16.27584 -16.03774 -15.37147 -15.17603 -15.02195 -14.90252 -14.27894 -13.81398 -13.68243 -13.39178 -13.05533 -13.02472 -12.95505 -12.58362 -12.35592 -12.01971 -11.96945 -11.82169 -11.70034 -11.42306 -11.18422 -10.97298 -10.93898 -10.81555 -10.64296 -10.50099 -10.03412 -9.97760 -9.70670 -8.73559 -8.32183 -8.23172 -7.95054 -7.79799 -6.04946 -4.07180 1.28061 1.48412 2.14408 2.85146 3.23657 3.28832 3.35986 3.39272 3.71723 3.96683 4.05925 4.38222 4.43668 4.53596 4.86198 4.94508 5.05336 5.24074 5.31594 5.31734 5.45315 5.49913 5.59813 5.65575 5.65885 5.72053 5.76648 5.82814 6.12239 6.25105 6.27266 6.40642 6.51033 6.52544 6.65372 6.69752 6.83199 7.26635 7.31478 7.36930 7.53870 7.83309 8.05186 8.16207 8.31373 8.62854 8.92719 9.55361 11.03968 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004718 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.109250 B = 5933.907451 C = 7763.889738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.558 5.558 4 C 0.228 3.772 5 C -0.515 4.515 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.562 6.562 15 C 0.488 3.512 16 O -0.425 6.425 17 N -0.662 5.662 18 C 0.208 3.792 19 C -0.148 4.148 20 C -0.066 4.066 21 C -0.157 4.157 22 C 0.117 3.883 23 C -0.210 4.210 24 C -0.105 4.105 25 C 0.054 3.946 26 O -0.307 6.307 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.415 0.585 36 H 0.155 0.845 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 4.289 13.602 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.288 5.288 4 C 0.110 3.890 5 C -0.554 4.554 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.444 6.444 15 C 0.269 3.731 16 O -0.291 6.291 17 N -0.310 5.310 18 C 0.113 3.887 19 C -0.168 4.168 20 C -0.084 4.084 21 C -0.177 4.177 22 C 0.072 3.928 23 C -0.214 4.214 24 C -0.142 4.142 25 C -0.021 4.021 26 O -0.221 6.221 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.172 0.828 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.765 4.632 13.188 14.089 hybrid contribution 0.827 -0.389 -0.075 0.917 sum -0.938 4.243 13.113 13.814 Atomic orbital electron populations 1.22102 0.96202 1.01607 1.02278 1.21442 0.94000 0.82765 1.03035 1.48313 1.58716 1.13470 1.08276 1.19950 0.97772 0.93361 0.77956 1.21179 0.94349 1.33306 1.06525 0.92821 1.24789 0.97199 0.94807 0.96423 1.69912 1.33778 1.34078 1.15043 0.86596 0.85165 0.77469 0.78740 1.20784 1.21101 1.20008 1.19724 0.80330 0.86412 0.84576 1.90648 1.56251 1.66459 1.31027 1.20451 0.80868 0.87944 0.83833 1.90985 1.46006 1.63405 1.28727 1.43229 1.64821 1.12310 1.10609 1.16944 0.93997 0.83596 0.94202 1.21503 0.97983 0.97458 0.99832 1.20809 0.97924 0.92793 0.96905 1.20204 1.04011 1.00987 0.92490 1.19211 0.96511 0.89640 0.87455 1.20439 1.07538 0.94335 0.99084 1.21748 1.00339 0.97608 0.94506 1.23773 0.88755 0.90270 0.99308 1.86817 1.47140 1.51737 1.36398 0.92731 0.92190 0.92015 0.89885 0.90561 0.94887 0.91756 0.92818 0.74836 0.82765 0.84732 0.85663 0.89395 0.89169 0.87811 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.92 6.11 -4.04 -0.02 1.89 16 3 N -0.56 -11.65 2.47 -175.60 -0.43 -12.08 16 4 C 0.23 5.56 4.78 -5.19 -0.02 5.53 16 5 C -0.51 -13.68 7.78 -34.44 -0.27 -13.95 16 6 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.51 10.40 7.67 -11.63 -0.09 10.31 16 14 O -0.56 -11.40 16.04 5.48 0.09 -11.31 16 15 C 0.49 9.80 7.58 -11.63 -0.09 9.71 16 16 O -0.42 -9.83 9.45 5.47 0.05 -9.78 16 17 N -0.66 -10.98 5.30 -10.39 -0.06 -11.03 16 18 C 0.21 3.39 6.31 -83.90 -0.53 2.86 16 19 C -0.15 -2.53 8.73 -39.31 -0.34 -2.88 16 20 C -0.07 -0.95 10.01 -39.71 -0.40 -1.35 16 21 C -0.16 -2.15 10.06 -39.25 -0.39 -2.54 16 22 C 0.12 1.67 7.03 -38.97 -0.27 1.39 16 23 C -0.21 -2.99 6.20 -103.76 -0.64 -3.63 16 24 C -0.10 -1.10 7.11 -26.38 -0.19 -1.29 16 25 C 0.05 0.51 8.00 38.05 0.30 0.82 16 26 O -0.31 -3.99 11.11 -20.21 -0.22 -4.21 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.08 1.28 7.36 -51.93 -0.38 0.90 16 32 H 0.03 0.83 8.02 -51.93 -0.42 0.41 16 33 H 0.06 1.71 5.84 -51.93 -0.30 1.41 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.41 6.00 8.29 -40.82 -0.34 5.67 16 36 H 0.15 3.05 6.11 -52.49 -0.32 2.73 16 37 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -31.00 354.56 -7.73 -38.73 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.53 Total: 6.06 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -2.68 Total: 6.64 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.25 Total: -47.68 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.08 Total: -25.30 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.00 -7.73 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361925539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.411 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds