Wall clock time and date at job start Tue Mar 31 2020 13:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47161 * 2 1 4 4 C 1.46503 * 120.00231 * 274.81554 * 3 2 1 5 5 C 1.50700 * 109.47165 * 263.66629 * 4 3 2 6 6 H 1.07998 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99833 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99782 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46860 * 90.00648 * 9 7 5 11 11 H 1.48499 * 109.47295 * 210.00230 * 9 7 5 12 12 H 1.48501 * 109.47478 * 330.00811 * 9 7 5 13 13 C 1.34773 * 120.00187 * 94.82102 * 3 2 1 14 14 O 1.21367 * 119.99733 * 354.61645 * 13 3 2 15 15 C 1.49349 * 120.00497 * 174.61902 * 13 3 2 16 16 O 1.21377 * 119.99674 * 0.21028 * 15 13 3 17 17 N 1.34773 * 120.00461 * 180.20038 * 15 13 3 18 18 C 1.39717 * 120.00442 * 184.88895 * 17 15 13 19 19 C 1.39093 * 120.08898 * 326.51862 * 18 17 15 20 20 C 1.38113 * 119.67656 * 180.02562 * 19 18 17 21 21 C 1.38022 * 120.43656 * 0.18051 * 20 19 18 22 22 C 1.39330 * 120.40360 * 0.02679 * 21 20 19 23 23 C 1.38379 * 120.08795 * 146.53124 * 18 17 15 24 24 C 1.51934 * 132.11777 * 358.83021 * 23 18 17 25 25 C 1.54699 * 101.78482 * 195.82806 * 24 23 18 26 26 O 1.36149 * 129.85257 * 179.52362 * 22 21 20 27 27 H 1.08995 * 109.46930 * 299.99909 * 1 2 3 28 28 H 1.09007 * 109.46817 * 59.99931 * 1 2 3 29 29 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47265 * 240.00124 * 2 1 3 31 31 H 1.08998 * 109.47193 * 120.00532 * 2 1 3 32 32 H 1.09006 * 109.46743 * 23.66692 * 4 3 2 33 33 H 1.09003 * 109.47026 * 143.66287 * 4 3 2 34 34 H 0.97006 * 119.99945 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00040 * 4.89943 * 17 15 13 36 36 H 1.08000 * 120.16383 * 359.97036 * 19 18 17 37 37 H 1.08002 * 119.78136 * 180.18840 * 20 19 18 38 38 H 1.08001 * 119.79959 * 180.02562 * 21 20 19 39 39 H 1.09003 * 110.89853 * 77.76037 * 24 23 18 40 40 H 1.09000 * 111.10504 * 313.98711 * 24 23 18 41 41 H 1.09001 * 110.75333 * 216.53977 * 25 24 23 42 42 H 1.09004 * 110.75075 * 93.36169 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1621 2.1073 -1.2642 5 6 3.5895 2.0131 -1.7382 6 1 4.3169 1.4672 -1.1557 7 6 3.9668 2.6237 -2.9155 8 7 3.0811 3.2888 -3.6244 9 14 5.7363 2.5074 -3.5026 10 1 5.8942 1.3081 -4.3640 11 1 6.0807 3.7245 -4.2806 12 1 6.6407 2.3971 -2.3299 13 6 2.3354 1.9838 1.1630 14 8 2.1249 1.4189 2.2163 15 6 2.9458 3.3469 1.1557 16 8 3.1528 3.9135 0.1025 17 7 3.2667 3.9479 2.3186 18 6 3.7422 5.2616 2.3182 19 6 4.5229 5.7203 1.2624 20 6 4.9889 7.0204 1.2710 21 6 4.6879 7.8642 2.3209 22 6 3.9103 7.4147 3.3861 23 6 3.4378 6.1099 3.3683 24 6 2.6079 5.9171 4.6263 25 6 2.3866 7.3776 5.0857 26 8 3.5085 8.0693 4.5103 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5012 1.6691 -2.0121 33 1 1.8974 3.1540 -1.1142 34 1 3.3465 3.7187 -4.4525 35 1 3.1676 3.4683 3.1559 36 1 4.7644 5.0628 0.4404 37 1 5.5928 7.3792 0.4506 38 1 5.0573 8.8790 2.3169 39 1 3.1631 5.3528 5.3756 40 1 1.6586 5.4318 4.3996 41 1 2.4068 7.4477 6.1733 42 1 1.4481 7.7682 4.6923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361925539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:31 Heat of formation + Delta-G solvation = -72.536662 kcal Electronic energy + Delta-G solvation = -27074.513616 eV Core-core repulsion = 23213.189464 eV Total energy + Delta-G solvation = -3861.324151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39814 -41.63224 -39.91013 -38.26780 -37.31122 -35.66249 -34.67427 -33.16190 -32.05661 -30.65495 -29.88527 -29.01722 -26.43525 -25.01424 -24.48567 -23.93356 -22.99237 -22.03363 -20.73747 -19.21580 -18.70825 -18.52649 -17.74048 -17.63267 -17.20382 -16.74664 -16.60368 -16.51659 -16.33405 -16.00156 -15.23304 -15.16191 -14.49765 -14.38675 -14.32165 -14.16366 -14.01426 -13.67155 -13.63789 -13.40944 -13.15282 -12.97404 -12.71468 -12.68951 -12.57811 -12.32848 -12.21005 -12.06146 -11.95577 -11.80005 -11.68812 -11.27212 -10.62484 -10.15207 -9.66178 -9.35213 -9.05403 -8.13476 -6.21633 0.01813 0.30648 0.63590 1.38143 1.39349 1.41363 1.50006 2.19033 2.29312 2.40438 2.59493 2.73347 3.20747 3.37357 3.46119 3.65442 4.01791 4.13711 4.15220 4.21213 4.33891 4.35681 4.47531 4.50826 4.51511 4.73382 4.75361 4.83817 4.88314 4.93118 5.01008 5.14670 5.16689 5.24362 5.32605 5.40094 5.49094 5.54636 5.66586 5.76053 6.07823 6.12638 6.18508 6.30240 6.75633 6.82700 7.06428 7.44261 8.94926 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.004718 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.109250 B = 5933.907451 C = 7763.889738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.564 5.564 4 C 0.248 3.752 5 C -0.517 4.517 6 H 0.044 0.956 7 C 0.024 3.976 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.558 6.558 15 C 0.486 3.514 16 O -0.464 6.464 17 N -0.644 5.644 18 C 0.185 3.815 19 C -0.173 4.173 20 C -0.068 4.068 21 C -0.153 4.153 22 C 0.112 3.888 23 C -0.210 4.210 24 C -0.105 4.105 25 C 0.051 3.949 26 O -0.314 6.314 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.022 0.978 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.425 0.575 36 H 0.121 0.879 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.138 0.862 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 4.589 15.581 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.294 5.294 4 C 0.128 3.872 5 C -0.555 4.555 6 H 0.062 0.938 7 C -0.175 4.175 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.288 3.712 14 O -0.440 6.440 15 C 0.268 3.732 16 O -0.333 6.333 17 N -0.292 5.292 18 C 0.090 3.910 19 C -0.193 4.193 20 C -0.086 4.086 21 C -0.172 4.172 22 C 0.066 3.934 23 C -0.213 4.213 24 C -0.142 4.142 25 C -0.023 4.023 26 O -0.229 6.229 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.264 0.736 36 H 0.139 0.861 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.156 0.844 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.753 4.913 15.227 16.096 hybrid contribution 0.796 -0.430 -0.542 1.054 sum -0.958 4.484 14.685 15.384 Atomic orbital electron populations 1.22028 0.94074 1.03577 1.01507 1.21704 0.95768 0.80858 1.03502 1.48294 1.59195 1.14691 1.07234 1.19444 0.96367 0.92374 0.79006 1.21334 0.95140 1.32724 1.06340 0.93756 1.25487 1.00719 0.94591 0.96712 1.70013 1.35484 1.35087 1.15491 0.85692 0.80795 0.77768 0.78172 1.19589 1.20849 1.20164 1.19830 0.80229 0.86630 0.84522 1.90633 1.56230 1.66517 1.30631 1.20496 0.80627 0.87800 0.84299 1.90983 1.47951 1.64228 1.30171 1.43021 1.63679 1.12592 1.09929 1.17050 0.95106 0.83631 0.95177 1.21362 0.99924 0.98383 0.99655 1.20980 0.97876 0.91845 0.97909 1.20485 1.03076 1.01849 0.91763 1.19440 0.96273 0.89771 0.87934 1.20744 1.07163 0.93974 0.99441 1.21905 1.00255 0.98929 0.93065 1.24100 0.88051 0.88927 1.01204 1.86817 1.48239 1.52126 1.35674 0.93240 0.93135 0.88653 0.89726 0.89725 0.95989 0.94163 0.92797 0.73632 0.86136 0.83054 0.83109 0.87554 0.88427 0.84400 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 10.24 71.98 0.74 -3.64 16 2 C 0.10 3.52 6.11 86.38 0.53 4.05 16 3 N -0.56 -23.91 2.47 -827.84 -2.05 -25.96 16 4 C 0.25 12.51 4.78 85.63 0.41 12.92 16 5 C -0.52 -28.21 7.78 25.60 0.20 -28.01 16 6 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 7 C 0.02 1.35 5.46 84.66 0.46 1.82 16 8 N -0.92 -53.70 13.29 21.45 0.28 -53.42 16 9 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.51 20.95 7.67 87.24 0.67 21.62 16 14 O -0.56 -22.28 16.04 -3.30 -0.05 -22.33 16 15 C 0.49 20.17 7.58 87.24 0.66 20.83 16 16 O -0.46 -22.61 9.45 -3.33 -0.03 -22.64 16 17 N -0.64 -21.63 5.30 -305.14 -1.62 -23.25 16 18 C 0.18 6.10 6.31 38.12 0.24 6.34 16 19 C -0.17 -6.17 8.73 22.45 0.20 -5.98 16 20 C -0.07 -1.96 10.01 22.19 0.22 -1.74 16 21 C -0.15 -3.94 10.06 22.48 0.23 -3.72 16 22 C 0.11 2.97 7.03 22.66 0.16 3.13 16 23 C -0.21 -5.69 6.20 -19.31 -0.12 -5.81 16 24 C -0.10 -1.92 7.11 30.82 0.22 -1.70 16 25 C 0.05 0.79 8.00 72.56 0.58 1.38 16 26 O -0.31 -7.28 11.11 -95.24 -1.06 -8.33 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 31 H 0.08 2.74 7.36 -2.39 -0.02 2.73 16 32 H 0.02 1.15 8.02 -2.38 -0.02 1.13 16 33 H 0.04 2.26 5.84 -2.39 -0.01 2.24 16 34 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 35 H 0.43 12.10 8.29 -92.71 -0.77 11.33 16 36 H 0.12 5.14 6.11 -2.91 -0.02 5.12 16 37 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -68.16 354.56 3.18 -64.98 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.29 Total: 23.21 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 5.39 Total: 21.49 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.38 Total: -102.63 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -1.14 Total: -53.31 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -68.16 3.18 -64.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361925539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.557 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds