Wall clock time and date at job start Tue Mar 31 2020 12:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 C 1.34778 * 119.99954 * 239.99638 * 12 2 1 15 15 O 1.21274 * 120.00193 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99882 * 180.02562 * 14 12 2 17 17 H 1.09003 * 115.55054 * 34.28186 * 16 14 12 18 18 C 1.53000 * 117.50044 * 248.60918 * 16 14 12 19 19 C 1.52998 * 60.00342 * 252.51074 * 18 16 14 20 20 H 1.09002 * 117.49501 * 107.48483 * 19 18 16 21 21 C 1.50691 * 117.49603 * 252.50985 * 19 18 16 22 22 C 1.38228 * 120.00533 * 8.34753 * 21 19 18 23 23 C 1.38241 * 120.00568 * 179.76578 * 22 21 19 24 24 C 1.38235 * 119.99235 * 0.50859 * 23 22 21 25 25 N 1.48024 * 119.99657 * 179.72389 * 24 23 22 26 26 O 1.21801 * 119.99968 * 180.02562 * 25 24 23 27 27 O 1.21796 * 120.00031 * 0.02562 * 25 24 23 28 28 C 1.38233 * 120.00700 * 359.74407 * 24 23 22 29 29 C 1.38240 * 119.99786 * 188.61730 * 21 19 18 30 30 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 31 31 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 33 33 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 35 35 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 36 36 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 37 37 H 1.09004 * 117.49500 * 0.02562 * 18 16 14 38 38 H 1.09000 * 117.49865 * 144.99495 * 18 16 14 39 39 H 1.08007 * 120.00225 * 0.02562 * 22 21 19 40 40 H 1.07991 * 120.00509 * 180.23247 * 23 22 21 41 41 H 1.07997 * 120.00451 * 179.97438 * 28 24 23 42 42 H 1.08003 * 119.99827 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1255 1.8916 16 6 3.2961 -0.7463 3.3134 17 1 3.5222 -1.8049 3.1854 18 6 2.7334 -0.3025 4.6652 19 6 4.1716 0.0516 4.2819 20 1 4.3838 1.0904 4.0293 21 6 5.2810 -0.6862 4.9860 22 6 4.9858 -1.7577 5.8079 23 6 6.0039 -2.4375 6.4500 24 6 7.3164 -2.0392 6.2783 25 7 8.4062 -2.7633 6.9706 26 8 9.5626 -2.4121 6.8197 27 8 8.1464 -3.7103 7.6911 28 6 7.6114 -0.9645 5.4605 29 6 6.5936 -0.2880 4.8143 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9026 -0.5282 -4.4376 34 1 2.4158 -2.7377 0.9716 35 1 1.6239 -2.2853 2.5001 36 1 0.6905 -2.3002 0.9846 37 1 1.9992 0.5031 4.6647 38 1 2.5893 -1.0692 5.4265 39 1 3.9599 -2.0664 5.9452 40 1 5.7735 -3.2769 7.0892 41 1 8.6368 -0.6531 5.3267 42 1 6.8239 0.5521 4.1758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412179890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:29 Heat of formation + Delta-G solvation = 24.064762 kcal Electronic energy + Delta-G solvation = -25719.451420 eV Core-core repulsion = 21862.316220 eV Total energy + Delta-G solvation = -3857.135199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40292 -40.53039 -39.34646 -36.88643 -36.78504 -35.47990 -32.86752 -32.05229 -31.72161 -30.50561 -27.13081 -26.39964 -25.26497 -24.48332 -23.94392 -23.10911 -21.32573 -20.58801 -19.64988 -18.89149 -18.45782 -17.74753 -17.50600 -16.77160 -16.06370 -15.84062 -15.56975 -15.41496 -14.93127 -14.44593 -14.25461 -13.71566 -13.55092 -13.49114 -13.00470 -12.48500 -12.43814 -12.32308 -12.22327 -11.98795 -11.82682 -11.75066 -11.66002 -11.40838 -11.36579 -11.28049 -11.17040 -10.78933 -10.71348 -10.23034 -9.79096 -9.74255 -9.56585 -9.41634 -9.19025 -8.71910 -7.87450 -6.22609 -4.24055 -0.46588 0.57723 1.03519 1.16068 2.66277 2.96673 3.16275 3.30358 3.31625 3.49429 3.72945 4.00868 4.07757 4.12423 4.27199 4.40411 4.51059 4.60322 4.67204 4.80894 4.93901 5.04263 5.12883 5.20632 5.31498 5.42590 5.46119 5.54951 5.67078 5.72674 5.87031 5.89166 5.98226 6.10064 6.15676 6.19169 6.22269 6.37736 6.73481 6.99440 7.20542 7.40347 7.52342 8.04235 8.36386 8.70024 8.79292 9.37738 10.90105 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.002505 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.312675 B =11176.620589 C =11453.457157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.063 0.937 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.293 1.293 12 N -0.580 5.580 13 C 0.086 3.914 14 C 0.534 3.466 15 O -0.551 6.551 16 C -0.161 4.161 17 H 0.126 0.874 18 C -0.141 4.141 19 C -0.107 4.107 20 H 0.137 0.863 21 C 0.011 3.989 22 C -0.122 4.122 23 C -0.049 4.049 24 C -0.055 4.055 25 N 0.031 4.969 26 O -0.164 6.164 27 O -0.165 6.165 28 C -0.049 4.049 29 C -0.108 4.108 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.267 0.733 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -2.006 20.299 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.128 3.872 3 H 0.080 0.920 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.310 5.310 13 C -0.058 4.058 14 C 0.320 3.680 15 O -0.431 6.431 16 C -0.182 4.182 17 H 0.144 0.856 18 C -0.179 4.179 19 C -0.125 4.125 20 H 0.155 0.845 21 C 0.011 3.989 22 C -0.141 4.141 23 C -0.069 4.069 24 C -0.138 4.138 25 N 0.549 4.451 26 O -0.379 6.379 27 O -0.380 6.380 28 C -0.069 4.069 29 C -0.127 4.127 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.461 -1.074 19.622 19.805 hybrid contribution -0.276 0.293 -0.256 0.477 sum 2.185 -0.781 19.366 19.505 Atomic orbital electron populations 1.22464 0.99004 1.01137 0.99350 1.19322 0.90025 0.95163 0.82709 0.91951 1.21138 1.32905 1.14323 0.88448 0.90361 1.24871 0.95645 0.96583 0.95612 1.69872 1.45043 1.40145 0.98021 0.86916 0.80435 0.83794 0.77558 1.20340 1.18827 1.22051 1.47782 1.48714 1.11921 1.22591 1.21628 1.02000 0.82579 0.99577 1.19333 0.78915 0.86442 0.83286 1.90651 1.58530 1.17100 1.76771 1.22479 1.04175 1.00497 0.91023 0.85606 1.23148 0.95345 1.03735 0.95638 1.21199 0.89498 1.00620 1.01201 0.84542 1.19678 0.94048 0.92865 0.92351 1.21152 0.99878 0.95694 0.97352 1.21022 0.89454 0.99090 0.97288 1.21133 0.87514 1.00134 1.05007 1.43642 1.02197 1.00001 0.99230 1.94542 1.04719 1.70712 1.67946 1.94531 1.89679 1.18985 1.34811 1.21076 1.02100 0.91537 0.92138 1.21133 0.90853 1.00981 0.99721 0.94791 0.93043 0.92459 0.92343 0.92750 0.92503 0.90644 0.87217 0.87422 0.83317 0.82897 0.82802 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.65 37.16 0.32 -2.98 16 2 C 0.23 5.28 2.23 -69.08 -0.15 5.13 16 3 H 0.06 1.61 5.96 -51.93 -0.31 1.30 16 4 C -0.53 -14.21 8.95 -34.44 -0.31 -14.52 16 5 H 0.08 2.27 7.89 -52.49 -0.41 1.85 16 6 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 8 Si 0.88 21.24 24.37 -169.99 -4.14 17.10 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 N -0.58 -11.03 2.75 -175.26 -0.48 -11.51 16 13 C 0.09 1.27 9.25 59.85 0.55 1.82 16 14 C 0.53 9.54 7.46 -10.99 -0.08 9.46 16 15 O -0.55 -11.90 15.58 5.56 0.09 -11.82 16 16 C -0.16 -1.91 4.43 -91.77 -0.41 -2.32 16 17 H 0.13 1.30 7.26 -51.93 -0.38 0.93 16 18 C -0.14 -1.23 9.56 -26.73 -0.26 -1.48 16 19 C -0.11 -1.07 5.55 -91.77 -0.51 -1.58 16 20 H 0.14 1.55 7.67 -51.93 -0.40 1.15 16 21 C 0.01 0.09 5.61 -104.63 -0.59 -0.49 16 22 C -0.12 -0.88 9.30 -39.58 -0.37 -1.25 16 23 C -0.05 -0.40 9.56 -39.58 -0.38 -0.78 16 24 C -0.05 -0.54 6.85 -79.95 -0.55 -1.09 16 25 N 0.03 0.37 4.45 33.96 0.15 0.52 16 26 O -0.16 -2.11 18.45 -29.46 -0.54 -2.65 16 27 O -0.16 -2.08 18.45 -29.46 -0.54 -2.63 16 28 C -0.05 -0.43 9.56 -39.58 -0.38 -0.81 16 29 C -0.11 -0.91 9.74 -39.58 -0.39 -1.29 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 32 H 0.06 1.08 6.66 -51.93 -0.35 0.73 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.61 6.64 -51.93 -0.34 0.27 16 36 H 0.07 1.12 6.43 -51.93 -0.33 0.79 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.11 0.61 6.17 -51.93 -0.32 0.29 16 39 H 0.15 0.72 6.02 -52.48 -0.32 0.40 16 40 H 0.15 1.00 7.61 -52.49 -0.40 0.60 16 41 H 0.15 1.15 7.61 -52.49 -0.40 0.75 16 42 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -33.11 350.66 -8.00 -41.11 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.00 Total: 0.38 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.58 Total: -10.17 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.44 Total: -36.61 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.00 Total: -17.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.11 -8.00 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412179890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.170 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds