Wall clock time and date at job start Tue Mar 31 2020 12:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 C 1.34778 * 119.99954 * 239.99638 * 12 2 1 15 15 O 1.21274 * 120.00193 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99882 * 180.02562 * 14 12 2 17 17 H 1.09003 * 115.55054 * 34.28186 * 16 14 12 18 18 C 1.53000 * 117.50044 * 248.60918 * 16 14 12 19 19 C 1.52998 * 60.00342 * 252.51074 * 18 16 14 20 20 H 1.09002 * 117.49501 * 107.48483 * 19 18 16 21 21 C 1.50691 * 117.49603 * 252.50985 * 19 18 16 22 22 C 1.38228 * 120.00533 * 8.34753 * 21 19 18 23 23 C 1.38241 * 120.00568 * 179.76578 * 22 21 19 24 24 C 1.38235 * 119.99235 * 0.50859 * 23 22 21 25 25 N 1.48024 * 119.99657 * 179.72389 * 24 23 22 26 26 O 1.21801 * 119.99968 * 180.02562 * 25 24 23 27 27 O 1.21796 * 120.00031 * 0.02562 * 25 24 23 28 28 C 1.38233 * 120.00700 * 359.74407 * 24 23 22 29 29 C 1.38240 * 119.99786 * 188.61730 * 21 19 18 30 30 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 31 31 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 33 33 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 35 35 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 36 36 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 37 37 H 1.09004 * 117.49500 * 0.02562 * 18 16 14 38 38 H 1.09000 * 117.49865 * 144.99495 * 18 16 14 39 39 H 1.08007 * 120.00225 * 0.02562 * 22 21 19 40 40 H 1.07991 * 120.00509 * 180.23247 * 23 22 21 41 41 H 1.07997 * 120.00451 * 179.97438 * 28 24 23 42 42 H 1.08003 * 119.99827 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1255 1.8916 16 6 3.2961 -0.7463 3.3134 17 1 3.5222 -1.8049 3.1854 18 6 2.7334 -0.3025 4.6652 19 6 4.1716 0.0516 4.2819 20 1 4.3838 1.0904 4.0293 21 6 5.2810 -0.6862 4.9860 22 6 4.9858 -1.7577 5.8079 23 6 6.0039 -2.4375 6.4500 24 6 7.3164 -2.0392 6.2783 25 7 8.4062 -2.7633 6.9706 26 8 9.5626 -2.4121 6.8197 27 8 8.1464 -3.7103 7.6911 28 6 7.6114 -0.9645 5.4605 29 6 6.5936 -0.2880 4.8143 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9026 -0.5282 -4.4376 34 1 2.4158 -2.7377 0.9716 35 1 1.6239 -2.2853 2.5001 36 1 0.6905 -2.3002 0.9846 37 1 1.9992 0.5031 4.6647 38 1 2.5893 -1.0692 5.4265 39 1 3.9599 -2.0664 5.9452 40 1 5.7735 -3.2769 7.0892 41 1 8.6368 -0.6531 5.3267 42 1 6.8239 0.5521 4.1758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412179890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:28 Heat of formation + Delta-G solvation = 4.411477 kcal Electronic energy + Delta-G solvation = -25720.303650 eV Core-core repulsion = 21862.316220 eV Total energy + Delta-G solvation = -3857.987430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.26275 -41.47301 -40.42619 -37.96216 -37.69599 -36.93663 -34.77292 -32.88566 -32.43030 -32.11904 -27.98514 -27.69281 -27.16292 -25.69122 -24.62924 -23.82985 -22.51269 -21.67228 -20.40334 -19.85977 -19.69779 -18.99355 -18.61856 -18.34978 -17.47896 -16.85737 -16.67474 -16.32361 -16.01920 -15.84110 -15.09305 -14.87580 -14.81631 -14.35242 -14.29900 -14.12610 -13.81807 -13.70606 -13.34037 -13.08125 -13.01193 -12.88315 -12.73381 -12.57446 -12.41274 -12.32409 -12.28841 -12.06996 -11.95155 -11.59676 -11.57172 -11.37332 -10.82649 -10.72082 -10.38667 -10.16813 -9.41875 -8.37826 -6.42737 -1.28324 -0.02192 0.22577 0.37324 1.24127 1.33814 1.42043 1.55027 2.11485 2.25110 2.29092 2.88376 2.97757 3.24469 3.38843 3.50816 3.59447 3.73364 3.79859 3.96250 4.07746 4.18666 4.30573 4.41215 4.44136 4.58284 4.59606 4.60650 4.70181 4.76000 4.77682 4.87236 4.91160 4.96858 5.05943 5.08393 5.15421 5.28908 5.32226 5.46830 5.47365 5.69946 6.17131 6.45959 6.59841 6.72921 7.18687 7.34945 8.78376 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.002505 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.312675 B =11176.620589 C =11453.457157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.231 3.769 3 H 0.030 0.970 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.940 5.940 8 Si 0.942 3.058 9 H -0.252 1.252 10 H -0.261 1.261 11 H -0.297 1.297 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.524 3.476 15 O -0.600 6.600 16 C -0.174 4.174 17 H 0.149 0.851 18 C -0.109 4.109 19 C -0.106 4.106 20 H 0.116 0.884 21 C 0.010 3.990 22 C -0.108 4.108 23 C -0.046 4.046 24 C -0.070 4.070 25 N 0.032 4.968 26 O -0.195 6.195 27 O -0.171 6.171 28 C -0.054 4.054 29 C -0.114 4.114 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.268 0.732 34 H 0.043 0.957 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.153 0.847 39 H 0.185 0.815 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -2.543 22.896 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.127 3.873 3 H 0.048 0.952 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.580 5.580 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.186 1.186 11 H -0.225 1.225 12 N -0.321 5.321 13 C -0.060 4.060 14 C 0.313 3.687 15 O -0.483 6.483 16 C -0.195 4.195 17 H 0.166 0.834 18 C -0.146 4.146 19 C -0.124 4.124 20 H 0.134 0.866 21 C 0.010 3.990 22 C -0.126 4.126 23 C -0.065 4.065 24 C -0.154 4.154 25 N 0.546 4.454 26 O -0.405 6.405 27 O -0.388 6.388 28 C -0.073 4.073 29 C -0.133 4.133 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.170 0.830 39 H 0.202 0.798 40 H 0.189 0.811 41 H 0.176 0.824 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.259 -1.633 22.250 22.312 hybrid contribution 0.465 0.446 -1.048 1.230 sum 0.724 -1.187 21.203 21.248 Atomic orbital electron populations 1.22309 0.96450 1.02383 1.00005 1.18957 0.91927 0.93344 0.83061 0.95182 1.21385 1.31748 1.13094 0.90346 0.93868 1.25674 0.97189 0.99529 0.95336 1.70008 1.47142 1.42210 0.98645 0.85963 0.79913 0.80106 0.77113 1.17769 1.18556 1.22491 1.47855 1.49188 1.13502 1.21549 1.21860 1.01372 0.79876 1.02846 1.20360 0.77645 0.86127 0.84529 1.90620 1.59991 1.19515 1.78137 1.22355 1.06647 1.00958 0.89501 0.83369 1.23382 0.93656 1.04004 0.93559 1.21099 0.91079 0.99516 1.00749 0.86598 1.19656 0.93354 0.93353 0.92671 1.21445 1.01187 0.94256 0.95674 1.21313 0.88552 0.99429 0.97156 1.21372 0.87564 1.00682 1.05738 1.43969 1.02550 0.99873 0.99027 1.94536 1.05753 1.71280 1.68885 1.94502 1.89694 1.19423 1.35133 1.21160 1.02583 0.91438 0.92075 1.21257 0.91079 1.01185 0.99750 0.92246 0.94126 0.90956 0.92255 0.93850 0.87415 0.90794 0.87724 0.82953 0.79834 0.81096 0.82403 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 8.65 71.98 0.62 -5.35 16 2 C 0.23 10.61 2.23 44.25 0.10 10.71 16 3 H 0.03 1.58 5.96 -2.39 -0.01 1.57 16 4 C -0.53 -28.99 8.95 25.60 0.23 -28.76 16 5 H 0.04 2.61 7.89 -2.91 -0.02 2.58 16 6 C 0.02 1.21 5.45 84.66 0.46 1.67 16 7 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 8 Si 0.94 44.14 24.37 68.60 1.67 45.81 16 9 H -0.25 -10.78 6.87 99.48 0.68 -10.09 16 10 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 11 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 12 N -0.59 -21.90 2.75 -826.80 -2.28 -24.18 16 13 C 0.08 2.25 9.25 127.77 1.18 3.43 16 14 C 0.52 18.21 7.46 87.66 0.65 18.87 16 15 O -0.60 -26.29 15.58 -3.01 -0.05 -26.33 16 16 C -0.17 -3.58 4.43 -11.54 -0.05 -3.63 16 17 H 0.15 2.40 7.26 -2.39 -0.02 2.38 16 18 C -0.11 -1.36 9.56 30.59 0.29 -1.07 16 19 C -0.11 -1.83 5.55 -11.54 -0.06 -1.89 16 20 H 0.12 2.54 7.67 -2.39 -0.02 2.52 16 21 C 0.01 0.14 5.61 -19.87 -0.11 0.03 16 22 C -0.11 -1.04 9.30 22.27 0.21 -0.83 16 23 C -0.05 -0.57 9.56 22.27 0.21 -0.36 16 24 C -0.07 -1.28 6.85 36.37 0.25 -1.03 16 25 N 0.03 0.75 4.45 -46.46 -0.21 0.54 16 26 O -0.20 -5.09 18.45 18.89 0.35 -4.74 16 27 O -0.17 -4.16 18.45 18.89 0.35 -3.81 16 28 C -0.05 -0.88 9.56 22.27 0.21 -0.67 16 29 C -0.11 -1.75 9.74 22.27 0.22 -1.53 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.66 3.27 -2.39 -0.01 1.65 16 32 H 0.07 2.56 6.66 -2.39 -0.02 2.54 16 33 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.81 6.64 -2.39 -0.02 1.79 16 36 H 0.07 2.02 6.43 -2.39 -0.02 2.01 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.15 0.57 6.17 -2.39 -0.01 0.55 16 39 H 0.18 0.46 6.02 -2.91 -0.02 0.45 16 40 H 0.17 1.55 7.61 -2.92 -0.02 1.52 16 41 H 0.16 2.36 7.61 -2.91 -0.02 2.34 16 42 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -76.99 350.66 5.53 -71.46 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.98 Total: 8.55 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.41 Total: -10.42 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -2.18 Total: -80.51 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: 0.65 Total: -34.89 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.81 kcal Total: -76.99 5.53 -71.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412179890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.867 kcal (2) G-P(sol) polarization free energy of solvation -76.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds