Wall clock time and date at job start Tue Mar 31 2020 12:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35985 * 116.99890 * 2 1 4 4 C 1.39238 * 119.87168 * 0.02562 * 3 2 1 5 5 C 1.37723 * 120.55488 * 180.02562 * 4 3 2 6 6 C 1.38966 * 120.00918 * 359.97438 * 5 4 3 7 7 O 1.34939 * 133.29185 * 179.97438 * 6 5 4 8 8 N 1.41351 * 109.32469 * 180.02562 * 7 6 5 9 9 C 1.29740 * 109.73787 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.28739 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47239 * 90.02131 * 10 9 8 12 12 O 1.21278 * 119.99826 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00065 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99903 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99826 * 180.02562 * 13 11 10 16 16 H 1.09002 * 109.47391 * 359.97438 * 15 13 11 17 17 C 1.53000 * 109.46840 * 120.00322 * 15 13 11 18 18 C 1.50699 * 109.47060 * 240.00064 * 15 13 11 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 13 20 20 C 1.37877 * 120.00129 * 180.02562 * 18 15 13 21 21 N 1.31519 * 119.99723 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99900 * 179.97438 * 20 18 15 23 23 H 1.48495 * 109.47112 * 60.00201 * 22 20 18 24 24 H 1.48503 * 109.47000 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46939 * 299.99464 * 22 20 18 26 26 C 1.40414 * 119.63103 * 0.30019 * 6 5 4 27 27 C 1.38048 * 119.87603 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47701 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47108 * 60.00073 * 1 2 3 31 31 H 1.08003 * 119.72350 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.99869 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47061 * 330.02468 * 10 9 8 34 34 H 1.08998 * 109.47073 * 210.02155 * 10 9 8 35 35 H 1.08994 * 109.47057 * 269.99924 * 14 13 11 36 36 H 1.09006 * 109.46711 * 30.00085 * 14 13 11 37 37 H 1.08998 * 109.46853 * 149.99878 * 14 13 11 38 38 H 1.09001 * 109.47194 * 299.99493 * 17 15 13 39 39 H 1.08992 * 109.47399 * 59.99666 * 17 15 13 40 40 H 1.09004 * 109.46724 * 180.02562 * 17 15 13 41 41 H 0.97003 * 119.99231 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.18285 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2853 2.3777 0.0005 5 6 1.8959 3.6122 0.0000 6 6 3.2826 3.7017 -0.0005 7 8 4.1427 4.7415 -0.0015 8 7 5.4687 4.2517 -0.0022 9 6 5.4565 2.9543 -0.0012 10 6 6.6629 2.0511 -0.0009 11 6 7.0652 1.7508 1.4200 12 8 6.4342 2.2232 2.3417 13 7 8.1257 0.9563 1.6665 14 6 8.8869 0.3842 0.5532 15 6 8.5165 0.6639 3.0478 16 1 7.8383 1.1728 3.7328 17 6 8.4477 -0.8455 3.2886 18 6 9.9243 1.1467 3.2845 19 1 10.4729 1.6240 2.4860 20 6 10.5120 0.9791 4.5204 21 7 9.8437 0.3983 5.4930 22 14 12.2573 1.5769 4.8135 23 1 12.3245 3.0419 4.5801 24 1 12.6535 1.2806 6.2137 25 1 13.1812 0.8839 3.8801 26 6 4.0540 2.5285 -0.0069 27 6 3.4250 1.2809 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2072 2.3135 0.0005 32 1 1.2969 4.5108 0.0000 33 1 7.4870 2.5455 -0.5151 34 1 6.4202 1.1207 -0.5142 35 1 8.4594 -0.5799 0.2782 36 1 8.8422 1.0587 -0.3020 37 1 9.9254 0.2484 0.8549 38 1 7.4295 -1.1947 3.1175 39 1 9.1261 -1.3540 2.6037 40 1 8.7381 -1.0630 4.3165 41 1 10.2574 0.2800 6.3624 42 1 4.0142 0.3758 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416147724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:54 Heat of formation + Delta-G solvation = -0.845248 kcal Electronic energy + Delta-G solvation = -26342.436927 eV Core-core repulsion = 22484.221549 eV Total energy + Delta-G solvation = -3858.215378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81256 -39.77036 -39.13792 -36.50425 -35.52175 -34.39010 -32.90796 -31.03939 -30.20030 -29.62009 -28.41246 -27.38001 -26.13392 -25.23141 -23.55968 -22.45554 -21.94708 -20.23258 -18.58294 -18.40943 -17.31367 -16.80273 -16.71726 -16.28984 -16.04572 -15.70560 -15.61945 -15.21323 -14.88452 -14.38549 -14.16119 -13.81334 -13.40155 -13.04487 -12.95212 -12.82025 -12.62211 -12.49753 -12.34299 -12.01166 -11.66521 -11.56152 -11.35551 -11.17270 -11.09685 -11.07132 -10.93246 -10.85079 -10.70147 -10.28555 -10.17927 -9.25676 -9.15604 -9.01794 -8.43915 -8.16056 -7.66967 -6.08587 -4.16920 0.46210 1.15558 1.98121 2.48130 2.99783 3.21991 3.27932 3.33152 3.35285 3.37746 3.80246 4.09055 4.21980 4.39027 4.39836 4.63098 4.72122 4.84649 4.88323 5.00044 5.14946 5.17138 5.20624 5.23087 5.29704 5.47033 5.64938 5.76424 5.80092 5.91874 5.97237 6.00730 6.16804 6.32248 6.73051 6.80103 7.03005 7.05499 7.26092 7.35242 7.49305 7.68918 7.98602 8.16772 8.44119 8.78055 8.95269 9.49428 10.96762 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.003131 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.136502 B = 8939.801139 C = 9647.312024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.096 3.904 4 C -0.147 4.147 5 C -0.087 4.087 6 C 0.052 3.948 7 O -0.092 6.092 8 N -0.270 5.270 9 C 0.161 3.839 10 C -0.079 4.079 11 C 0.509 3.491 12 O -0.541 6.541 13 N -0.589 5.589 14 C 0.079 3.921 15 C 0.259 3.741 16 H 0.063 0.937 17 C -0.146 4.146 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.141 4.141 27 C -0.070 4.070 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.011 0.989 39 H 0.030 0.970 40 H 0.094 0.906 41 H 0.264 0.736 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 -1.501 -15.176 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.051 3.949 4 C -0.167 4.167 5 C -0.107 4.107 6 C -0.001 4.001 7 O -0.103 6.103 8 N -0.012 5.012 9 C -0.021 4.021 10 C -0.120 4.120 11 C 0.294 3.706 12 O -0.419 6.419 13 N -0.320 5.320 14 C -0.065 4.065 15 C 0.159 3.841 16 H 0.081 0.919 17 C -0.204 4.204 18 C -0.567 4.567 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.145 4.145 27 C -0.091 4.091 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.030 0.970 39 H 0.049 0.951 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.822 -0.318 -14.468 21.442 hybrid contribution 0.398 -0.243 0.208 0.511 sum -15.424 -0.562 -14.260 21.013 Atomic orbital electron populations 1.23081 0.78316 1.04168 1.01292 1.86113 1.21327 1.26030 1.89251 1.18565 0.91636 0.84519 1.00204 1.21160 1.00386 0.91072 1.04070 1.19714 0.89045 0.98473 1.03438 1.20135 0.92825 0.87345 0.99843 1.89159 1.12062 1.27323 1.81793 1.79870 0.92335 1.10696 1.18341 1.23808 0.93769 0.92169 0.92392 1.20412 0.93670 0.98884 0.98990 1.19826 0.81592 0.80099 0.89119 1.90718 1.53593 1.51845 1.45771 1.48220 1.27448 1.46630 1.09694 1.21686 0.98753 0.97219 0.88867 1.18971 0.96139 0.92991 0.76006 0.91870 1.22080 0.96623 0.97505 1.04216 1.21274 0.98557 1.39381 0.97501 0.92208 1.24892 0.98140 0.94928 0.95765 1.69873 1.37139 1.42519 1.02978 0.86543 0.84166 0.79362 0.77252 1.20208 1.21155 1.20194 1.20325 0.90957 0.94260 1.08935 1.19757 0.91531 0.96770 1.01053 0.88084 0.92529 0.92653 0.83909 0.84061 0.86348 0.86308 0.93496 0.92687 0.89749 0.96968 0.95067 0.88798 0.92586 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.32 10.49 -19.69 -0.21 -3.53 16 3 C 0.10 1.12 6.68 -39.28 -0.26 0.85 16 4 C -0.15 -1.43 9.01 -39.40 -0.36 -1.79 16 5 C -0.09 -0.97 10.06 -39.50 -0.40 -1.37 16 6 C 0.05 0.78 7.48 -38.49 -0.29 0.49 16 7 O -0.09 -1.58 12.07 7.34 0.09 -1.49 16 8 N -0.27 -4.93 12.81 34.91 0.45 -4.48 16 9 C 0.16 2.66 5.95 -80.12 -0.48 2.18 16 10 C -0.08 -1.15 4.85 -29.04 -0.14 -1.29 16 11 C 0.51 10.36 7.67 -10.98 -0.08 10.28 16 12 O -0.54 -13.60 15.36 5.56 0.09 -13.52 16 13 N -0.59 -12.14 2.75 -175.26 -0.48 -12.62 16 14 C 0.08 1.21 9.23 59.85 0.55 1.77 16 15 C 0.26 6.54 2.64 -69.08 -0.18 6.36 16 16 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 17 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 18 C -0.53 -14.18 7.99 -34.44 -0.28 -14.45 16 19 H 0.06 1.56 7.34 -52.49 -0.39 1.18 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.89 -25.10 11.32 55.43 0.63 -24.48 16 22 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.14 -2.16 6.32 -105.17 -0.66 -2.83 16 27 C -0.07 -0.94 10.03 -39.10 -0.39 -1.33 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 30 H 0.05 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.14 0.89 6.26 -52.48 -0.33 0.56 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.47 7.40 -51.93 -0.38 1.09 16 34 H 0.12 1.28 8.11 -51.93 -0.42 0.86 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.66 6.44 -51.93 -0.33 0.32 16 37 H 0.08 1.42 7.02 -51.93 -0.36 1.05 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -34.60 355.01 -6.18 -40.78 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.33 Total: -0.64 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.74 Total: -1.38 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.59 Total: -41.58 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.03 Total: -18.54 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.60 -6.18 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416147724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.932 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds