Wall clock time and date at job start Tue Mar 31 2020 12:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35985 * 116.99890 * 2 1 4 4 C 1.39238 * 119.87168 * 0.02562 * 3 2 1 5 5 C 1.37723 * 120.55488 * 180.02562 * 4 3 2 6 6 C 1.38966 * 120.00918 * 359.97438 * 5 4 3 7 7 O 1.34939 * 133.29185 * 179.97438 * 6 5 4 8 8 N 1.41351 * 109.32469 * 180.02562 * 7 6 5 9 9 C 1.29740 * 109.73787 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.28739 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47239 * 90.02131 * 10 9 8 12 12 O 1.21278 * 119.99826 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00065 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99903 * 359.97438 * 13 11 10 15 15 C 1.46499 * 119.99826 * 180.02562 * 13 11 10 16 16 H 1.09002 * 109.47391 * 359.97438 * 15 13 11 17 17 C 1.53000 * 109.46840 * 120.00322 * 15 13 11 18 18 C 1.50699 * 109.47060 * 240.00064 * 15 13 11 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 13 20 20 C 1.37877 * 120.00129 * 180.02562 * 18 15 13 21 21 N 1.31519 * 119.99723 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99900 * 179.97438 * 20 18 15 23 23 H 1.48495 * 109.47112 * 60.00201 * 22 20 18 24 24 H 1.48503 * 109.47000 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46939 * 299.99464 * 22 20 18 26 26 C 1.40414 * 119.63103 * 0.30019 * 6 5 4 27 27 C 1.38048 * 119.87603 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47701 * 299.99831 * 1 2 3 30 30 H 1.09002 * 109.47108 * 60.00073 * 1 2 3 31 31 H 1.08003 * 119.72350 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.99869 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47061 * 330.02468 * 10 9 8 34 34 H 1.08998 * 109.47073 * 210.02155 * 10 9 8 35 35 H 1.08994 * 109.47057 * 269.99924 * 14 13 11 36 36 H 1.09006 * 109.46711 * 30.00085 * 14 13 11 37 37 H 1.08998 * 109.46853 * 149.99878 * 14 13 11 38 38 H 1.09001 * 109.47194 * 299.99493 * 17 15 13 39 39 H 1.08992 * 109.47399 * 59.99666 * 17 15 13 40 40 H 1.09004 * 109.46724 * 180.02562 * 17 15 13 41 41 H 0.97003 * 119.99231 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.18285 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2853 2.3777 0.0005 5 6 1.8959 3.6122 0.0000 6 6 3.2826 3.7017 -0.0005 7 8 4.1427 4.7415 -0.0015 8 7 5.4687 4.2517 -0.0022 9 6 5.4565 2.9543 -0.0012 10 6 6.6629 2.0511 -0.0009 11 6 7.0652 1.7508 1.4200 12 8 6.4342 2.2232 2.3417 13 7 8.1257 0.9563 1.6665 14 6 8.8869 0.3842 0.5532 15 6 8.5165 0.6639 3.0478 16 1 7.8383 1.1728 3.7328 17 6 8.4477 -0.8455 3.2886 18 6 9.9243 1.1467 3.2845 19 1 10.4729 1.6240 2.4860 20 6 10.5120 0.9791 4.5204 21 7 9.8437 0.3983 5.4930 22 14 12.2573 1.5769 4.8135 23 1 12.3245 3.0419 4.5801 24 1 12.6535 1.2806 6.2137 25 1 13.1812 0.8839 3.8801 26 6 4.0540 2.5285 -0.0069 27 6 3.4250 1.2809 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2072 2.3135 0.0005 32 1 1.2969 4.5108 0.0000 33 1 7.4870 2.5455 -0.5151 34 1 6.4202 1.1207 -0.5142 35 1 8.4594 -0.5799 0.2782 36 1 8.8422 1.0587 -0.3020 37 1 9.9254 0.2484 0.8549 38 1 7.4295 -1.1947 3.1175 39 1 9.1261 -1.3540 2.6037 40 1 8.7381 -1.0630 4.3165 41 1 10.2574 0.2800 6.3624 42 1 4.0142 0.3758 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416147724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:54 Heat of formation + Delta-G solvation = -24.294618 kcal Electronic energy + Delta-G solvation = -26343.453768 eV Core-core repulsion = 22484.221549 eV Total energy + Delta-G solvation = -3859.232219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.90244 -40.81666 -40.53557 -37.40050 -37.25807 -35.65780 -34.80939 -32.13635 -31.71987 -30.60204 -29.84979 -27.98206 -27.53850 -27.29661 -24.54325 -23.59118 -23.38803 -21.63521 -19.96182 -19.43575 -18.55886 -18.41857 -17.96206 -17.57849 -17.22157 -16.92182 -16.74781 -16.49459 -16.17127 -16.07382 -15.24380 -14.77396 -14.63492 -14.53802 -14.22868 -14.05166 -13.94245 -13.50486 -13.38637 -13.35734 -13.05272 -13.01459 -12.85310 -12.74642 -12.67487 -12.43437 -12.24688 -12.17987 -12.12850 -11.90332 -11.82993 -11.20343 -10.77084 -10.50495 -10.09945 -9.36400 -9.09709 -8.15334 -6.31843 -0.54192 0.19336 0.84568 1.39384 1.40845 1.43831 1.50603 1.69002 2.20085 2.31485 2.43348 2.52963 2.95297 3.12926 3.15259 3.51454 3.64718 3.79880 3.94577 4.08566 4.20897 4.27794 4.38939 4.44207 4.47345 4.57754 4.74810 4.77836 4.80352 4.83032 4.91428 4.91825 5.02637 5.05681 5.06795 5.10820 5.27808 5.48038 5.58171 5.66292 6.03190 6.08663 6.15928 6.34748 6.75540 6.76146 7.26712 7.43301 8.88925 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.003131 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.136502 B = 8939.801139 C = 9647.312024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.099 3.901 4 C -0.131 4.131 5 C -0.083 4.083 6 C 0.022 3.978 7 O -0.110 6.110 8 N -0.310 5.310 9 C 0.154 3.846 10 C -0.065 4.065 11 C 0.502 3.498 12 O -0.602 6.602 13 N -0.594 5.594 14 C 0.071 3.929 15 C 0.262 3.738 16 H 0.005 0.995 17 C -0.130 4.130 18 C -0.540 4.540 19 H 0.064 0.936 20 C 0.014 3.986 21 N -0.918 5.918 22 Si 0.964 3.036 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.259 1.259 26 C -0.162 4.162 27 C -0.091 4.091 28 H 0.118 0.882 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.264 0.736 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.325 -2.467 -17.481 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.244 6.244 3 C 0.054 3.946 4 C -0.151 4.151 5 C -0.102 4.102 6 C -0.031 4.031 7 O -0.121 6.121 8 N -0.053 5.053 9 C -0.027 4.027 10 C -0.105 4.105 11 C 0.289 3.711 12 O -0.484 6.484 13 N -0.324 5.324 14 C -0.071 4.071 15 C 0.160 3.840 16 H 0.023 0.977 17 C -0.189 4.189 18 C -0.579 4.579 19 H 0.082 0.918 20 C -0.185 4.185 21 N -0.557 5.557 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.165 4.165 27 C -0.112 4.112 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.203 0.797 32 H 0.189 0.811 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.850 -1.316 -16.829 23.851 hybrid contribution 0.516 -0.020 0.926 1.060 sum -16.334 -1.337 -15.903 22.836 Atomic orbital electron populations 1.23463 0.75832 1.05990 1.02812 1.86109 1.23912 1.25503 1.88853 1.18728 0.91358 0.85708 0.98826 1.21626 1.02318 0.89643 1.01473 1.20203 0.87645 1.00366 1.01979 1.20710 0.94151 0.86713 1.01562 1.89070 1.12159 1.28389 1.82530 1.79764 0.93428 1.11878 1.20190 1.24163 0.95089 0.92024 0.91471 1.20461 0.93983 1.00899 0.95107 1.20714 0.80650 0.78780 0.90970 1.90688 1.55475 1.53949 1.48287 1.48193 1.28119 1.46876 1.09229 1.22023 0.97380 0.99522 0.88169 1.18532 0.94146 0.93251 0.78024 0.97742 1.21850 0.97575 0.96535 1.02940 1.21582 0.99223 1.39282 0.97804 0.91831 1.25741 1.02116 0.95076 0.95582 1.70026 1.38769 1.43567 1.03305 0.85525 0.79690 0.78505 0.77399 1.20549 1.20997 1.18334 1.20448 0.90547 0.95240 1.10301 1.19902 0.92786 0.96240 1.02250 0.86387 0.91418 0.90564 0.79668 0.81067 0.83695 0.81862 0.90599 0.88532 0.91104 0.95986 0.93051 0.91603 0.92666 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -6.16 10.49 -93.38 -0.98 -7.14 16 3 C 0.10 2.12 6.68 22.47 0.15 2.27 16 4 C -0.13 -2.16 9.01 22.39 0.20 -1.96 16 5 C -0.08 -1.68 10.06 22.32 0.22 -1.46 16 6 C 0.02 0.65 7.48 22.97 0.17 0.82 16 7 O -0.11 -3.91 12.07 28.66 0.35 -3.57 16 8 N -0.31 -11.68 12.81 -43.47 -0.56 -12.24 16 9 C 0.15 5.14 5.95 45.04 0.27 5.41 16 10 C -0.06 -1.80 4.85 29.10 0.14 -1.66 16 11 C 0.50 20.63 7.67 87.66 0.67 21.30 16 12 O -0.60 -31.86 15.36 -3.02 -0.05 -31.91 16 13 N -0.59 -24.37 2.75 -826.79 -2.28 -26.65 16 14 C 0.07 2.00 9.23 127.77 1.18 3.18 16 15 C 0.26 13.68 2.64 44.25 0.12 13.79 16 16 H 0.00 0.29 6.90 -2.39 -0.02 0.28 16 17 C -0.13 -6.23 8.97 71.98 0.65 -5.58 16 18 C -0.54 -29.45 7.99 25.60 0.20 -29.25 16 19 H 0.06 3.33 7.34 -2.91 -0.02 3.31 16 20 C 0.01 0.80 5.30 84.65 0.45 1.25 16 21 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 22 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 C -0.16 -4.98 6.32 -20.22 -0.13 -5.11 16 27 C -0.09 -2.37 10.03 22.58 0.23 -2.15 16 28 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 30 H 0.08 0.36 7.65 -2.39 -0.02 0.34 16 31 H 0.19 1.39 6.26 -2.91 -0.02 1.37 16 32 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 33 H 0.15 3.25 7.40 -2.39 -0.02 3.23 16 34 H 0.16 3.01 8.11 -2.39 -0.02 2.99 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 1.92 6.44 -2.38 -0.02 1.91 16 37 H 0.07 2.23 7.02 -2.39 -0.02 2.21 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 40 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 41 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -82.13 355.01 5.44 -76.68 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.05 Total: 10.57 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.64 Total: 2.09 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.59 Total: -92.17 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -0.68 Total: -42.62 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -82.13 5.44 -76.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416147724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.389 kcal (2) G-P(sol) polarization free energy of solvation -82.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds