Wall clock time and date at job start Tue Mar 31 2020 12:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35979 * 117.00139 * 2 1 4 4 C 1.39236 * 119.87117 * 359.97438 * 3 2 1 5 5 C 1.37728 * 120.55221 * 180.02562 * 4 3 2 6 6 C 1.38960 * 120.01583 * 0.02562 * 5 4 3 7 7 O 1.34933 * 133.29272 * 179.97438 * 6 5 4 8 8 N 1.41351 * 109.32133 * 180.02562 * 7 6 5 9 9 C 1.29738 * 109.74177 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.29129 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47377 * 90.01942 * 10 9 8 12 12 O 1.21282 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99838 * 0.02562 * 13 11 10 15 15 C 1.46500 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.09001 * 109.47297 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46998 * 240.00425 * 15 13 11 18 18 C 1.50698 * 109.46840 * 120.00599 * 15 13 11 19 19 H 1.07993 * 120.00472 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31515 * 120.00420 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99716 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47049 * 89.99950 * 22 20 18 24 24 H 1.48499 * 109.47170 * 209.99777 * 22 20 18 25 25 H 1.48502 * 109.47245 * 329.99617 * 22 20 18 26 26 C 1.40413 * 119.62592 * 0.29822 * 6 5 4 27 27 C 1.38047 * 119.87666 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47651 * 300.00460 * 1 2 3 30 30 H 1.08999 * 109.46808 * 60.00738 * 1 2 3 31 31 H 1.07997 * 119.72188 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.98807 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47241 * 330.02282 * 10 9 8 34 34 H 1.08996 * 109.47235 * 210.02725 * 10 9 8 35 35 H 1.08999 * 109.46748 * 269.99069 * 14 13 11 36 36 H 1.08997 * 109.47257 * 29.99586 * 14 13 11 37 37 H 1.09002 * 109.46769 * 149.99443 * 14 13 11 38 38 H 1.09001 * 109.47002 * 179.97438 * 17 15 13 39 39 H 1.08993 * 109.46955 * 300.00226 * 17 15 13 40 40 H 1.09000 * 109.47050 * 60.00054 * 17 15 13 41 41 H 0.97001 * 120.00306 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.18308 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2854 2.3776 -0.0005 5 6 1.8961 3.6121 -0.0011 6 6 3.2828 3.7017 -0.0016 7 8 4.1428 4.7414 -0.0026 8 7 5.4687 4.2515 -0.0034 9 6 5.4567 2.9542 -0.0034 10 6 6.6629 2.0510 -0.0035 11 6 7.0649 1.7495 1.4173 12 8 6.4336 2.2212 2.3392 13 7 8.1252 0.9548 1.6634 14 6 8.8874 0.3845 0.5498 15 6 8.5156 0.6612 3.0446 16 1 7.8368 1.1689 3.7298 17 6 9.9449 1.1512 3.2857 18 6 8.4479 -0.8256 3.2805 19 1 8.1447 -1.4859 2.4815 20 6 8.7729 -1.3430 4.5166 21 7 9.1425 -0.5390 5.4895 22 14 8.6882 -3.1860 4.8092 23 1 10.0005 -3.7997 4.4833 24 1 8.3601 -3.4464 6.2339 25 1 7.6365 -3.7769 3.9432 26 6 4.0541 2.5284 -0.0080 27 6 3.4251 1.2808 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.2073 2.3134 -0.0005 32 1 1.2969 4.5107 -0.0019 33 1 7.4873 2.5458 -0.5170 34 1 6.4204 1.1210 -0.5177 35 1 8.4602 -0.5794 0.2731 36 1 8.8433 1.0601 -0.3044 37 1 9.9257 0.2484 0.8521 38 1 10.2353 0.9332 4.3134 39 1 10.6235 0.6433 2.6005 40 1 9.9940 2.2267 3.1150 41 1 9.3715 -0.9030 6.3590 42 1 4.0142 0.3757 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416147727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:59 Heat of formation + Delta-G solvation = -0.184548 kcal Electronic energy + Delta-G solvation = -26419.023360 eV Core-core repulsion = 22560.836632 eV Total energy + Delta-G solvation = -3858.186728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79689 -39.73698 -39.13905 -36.47453 -35.52781 -34.38371 -32.90957 -31.01112 -30.19997 -29.59505 -28.40154 -27.34361 -26.17491 -25.22189 -23.53546 -22.43119 -21.93899 -20.21215 -18.56542 -18.39023 -17.29669 -16.80183 -16.67866 -16.30984 -16.02465 -15.65455 -15.58628 -15.23407 -14.89844 -14.34937 -14.14764 -13.78990 -13.40361 -13.01454 -12.95138 -12.83248 -12.59785 -12.58819 -12.30581 -12.03157 -11.62522 -11.55549 -11.34112 -11.15817 -11.08993 -11.04606 -10.93051 -10.81059 -10.70297 -10.28465 -10.18437 -9.23136 -9.14435 -9.01141 -8.44762 -8.12926 -7.66636 -6.08547 -4.16891 0.48233 1.18529 1.98811 2.49143 3.03607 3.22244 3.25806 3.33175 3.35825 3.40495 3.80672 4.09516 4.23512 4.38781 4.42713 4.65904 4.75409 4.88378 4.91402 5.00391 5.16381 5.21083 5.22900 5.23134 5.29364 5.48582 5.64987 5.76860 5.82306 5.95483 6.00748 6.03847 6.19324 6.24605 6.74343 6.79718 7.02576 7.09361 7.26835 7.36440 7.47760 7.68967 7.98677 8.16204 8.44334 8.78355 8.95258 9.49579 10.96824 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.003715 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.243371 B = 7535.378245 C = 8971.959080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.096 3.904 4 C -0.147 4.147 5 C -0.088 4.088 6 C 0.052 3.948 7 O -0.092 6.092 8 N -0.274 5.274 9 C 0.162 3.838 10 C -0.079 4.079 11 C 0.509 3.491 12 O -0.541 6.541 13 N -0.589 5.589 14 C 0.082 3.918 15 C 0.258 3.742 16 H 0.064 0.936 17 C -0.148 4.148 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.141 4.141 27 C -0.069 4.069 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.031 0.969 40 H 0.012 0.988 41 H 0.263 0.737 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 2.634 -15.205 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.051 3.949 4 C -0.167 4.167 5 C -0.107 4.107 6 C -0.002 4.002 7 O -0.104 6.104 8 N -0.016 5.016 9 C -0.020 4.020 10 C -0.120 4.120 11 C 0.294 3.706 12 O -0.419 6.419 13 N -0.320 5.320 14 C -0.062 4.062 15 C 0.159 3.841 16 H 0.082 0.918 17 C -0.206 4.206 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.145 4.145 27 C -0.090 4.090 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.704 3.872 -14.500 19.663 hybrid contribution -0.586 -1.605 0.230 1.724 sum -13.290 2.267 -14.270 19.631 Atomic orbital electron populations 1.23080 0.78338 1.04180 1.01252 1.86124 1.21308 1.26009 1.89205 1.18571 0.91649 0.84531 1.00118 1.21163 1.00384 0.91076 1.04038 1.19703 0.89027 0.98446 1.03572 1.20119 0.92813 0.87305 0.99946 1.89146 1.12039 1.27314 1.81884 1.79833 0.92463 1.10667 1.18619 1.23803 0.93826 0.92140 0.92221 1.20414 0.93606 0.98957 0.98986 1.19815 0.81559 0.80136 0.89122 1.90720 1.53121 1.52342 1.45750 1.48217 1.27959 1.46151 1.09697 1.21643 0.98098 0.97831 0.88635 1.18984 0.93207 0.95952 0.76002 0.91835 1.22105 0.98369 0.95920 1.04231 1.21298 1.46310 0.91435 0.97422 0.92192 1.24896 0.94884 0.98212 0.95782 1.69879 1.45178 1.34523 1.02964 0.86488 0.78305 0.85017 0.77544 1.20602 1.21115 1.19900 1.20317 0.90945 0.94253 1.08975 1.19791 0.91575 0.96858 1.00741 0.88083 0.92538 0.92668 0.83911 0.84087 0.86455 0.86203 0.92899 0.92826 0.90515 0.88724 0.95001 0.96898 0.92652 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.56 10.49 -19.67 -0.21 -3.77 16 3 C 0.10 1.19 6.68 -39.28 -0.26 0.92 16 4 C -0.15 -1.50 9.01 -39.40 -0.36 -1.85 16 5 C -0.09 -1.00 10.05 -39.50 -0.40 -1.40 16 6 C 0.05 0.78 7.48 -38.50 -0.29 0.49 16 7 O -0.09 -1.58 12.07 7.36 0.09 -1.49 16 8 N -0.27 -4.90 12.81 34.91 0.45 -4.46 16 9 C 0.16 2.68 5.95 -80.12 -0.48 2.20 16 10 C -0.08 -1.15 4.85 -29.04 -0.14 -1.29 16 11 C 0.51 10.35 7.67 -10.99 -0.08 10.26 16 12 O -0.54 -13.59 15.36 5.56 0.09 -13.51 16 13 N -0.59 -12.13 2.75 -175.25 -0.48 -12.61 16 14 C 0.08 1.26 9.48 59.85 0.57 1.83 16 15 C 0.26 6.53 2.64 -69.08 -0.18 6.35 16 16 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 17 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 18 C -0.53 -14.00 8.37 -34.44 -0.29 -14.28 16 19 H 0.06 1.56 7.64 -52.49 -0.40 1.16 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 22 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.14 -2.21 6.32 -105.16 -0.66 -2.88 16 27 C -0.07 -0.97 10.03 -39.10 -0.39 -1.36 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.14 0.95 6.26 -52.49 -0.33 0.62 16 32 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.12 1.40 7.40 -51.93 -0.38 1.01 16 34 H 0.12 1.35 8.11 -51.93 -0.42 0.93 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 37 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 38 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 39 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -34.44 354.33 -6.12 -40.57 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.27 Total: -0.14 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.74 Total: -1.35 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.59 Total: -41.48 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.03 Total: -18.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.44 -6.12 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416147727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.382 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds