Wall clock time and date at job start Tue Mar 31 2020 12:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35979 * 117.00139 * 2 1 4 4 C 1.39236 * 119.87117 * 359.97438 * 3 2 1 5 5 C 1.37728 * 120.55221 * 180.02562 * 4 3 2 6 6 C 1.38960 * 120.01583 * 0.02562 * 5 4 3 7 7 O 1.34933 * 133.29272 * 179.97438 * 6 5 4 8 8 N 1.41351 * 109.32133 * 180.02562 * 7 6 5 9 9 C 1.29738 * 109.74177 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.29129 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47377 * 90.01942 * 10 9 8 12 12 O 1.21282 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99838 * 0.02562 * 13 11 10 15 15 C 1.46500 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.09001 * 109.47297 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46998 * 240.00425 * 15 13 11 18 18 C 1.50698 * 109.46840 * 120.00599 * 15 13 11 19 19 H 1.07993 * 120.00472 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31515 * 120.00420 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99716 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47049 * 89.99950 * 22 20 18 24 24 H 1.48499 * 109.47170 * 209.99777 * 22 20 18 25 25 H 1.48502 * 109.47245 * 329.99617 * 22 20 18 26 26 C 1.40413 * 119.62592 * 0.29822 * 6 5 4 27 27 C 1.38047 * 119.87666 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47651 * 300.00460 * 1 2 3 30 30 H 1.08999 * 109.46808 * 60.00738 * 1 2 3 31 31 H 1.07997 * 119.72188 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.98807 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47241 * 330.02282 * 10 9 8 34 34 H 1.08996 * 109.47235 * 210.02725 * 10 9 8 35 35 H 1.08999 * 109.46748 * 269.99069 * 14 13 11 36 36 H 1.08997 * 109.47257 * 29.99586 * 14 13 11 37 37 H 1.09002 * 109.46769 * 149.99443 * 14 13 11 38 38 H 1.09001 * 109.47002 * 179.97438 * 17 15 13 39 39 H 1.08993 * 109.46955 * 300.00226 * 17 15 13 40 40 H 1.09000 * 109.47050 * 60.00054 * 17 15 13 41 41 H 0.97001 * 120.00306 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.18308 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2854 2.3776 -0.0005 5 6 1.8961 3.6121 -0.0011 6 6 3.2828 3.7017 -0.0016 7 8 4.1428 4.7414 -0.0026 8 7 5.4687 4.2515 -0.0034 9 6 5.4567 2.9542 -0.0034 10 6 6.6629 2.0510 -0.0035 11 6 7.0649 1.7495 1.4173 12 8 6.4336 2.2212 2.3392 13 7 8.1252 0.9548 1.6634 14 6 8.8874 0.3845 0.5498 15 6 8.5156 0.6612 3.0446 16 1 7.8368 1.1689 3.7298 17 6 9.9449 1.1512 3.2857 18 6 8.4479 -0.8256 3.2805 19 1 8.1447 -1.4859 2.4815 20 6 8.7729 -1.3430 4.5166 21 7 9.1425 -0.5390 5.4895 22 14 8.6882 -3.1860 4.8092 23 1 10.0005 -3.7997 4.4833 24 1 8.3601 -3.4464 6.2339 25 1 7.6365 -3.7769 3.9432 26 6 4.0541 2.5284 -0.0080 27 6 3.4251 1.2808 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.2073 2.3134 -0.0005 32 1 1.2969 4.5107 -0.0019 33 1 7.4873 2.5458 -0.5170 34 1 6.4204 1.1210 -0.5177 35 1 8.4602 -0.5794 0.2731 36 1 8.8433 1.0601 -0.3044 37 1 9.9257 0.2484 0.8521 38 1 10.2353 0.9332 4.3134 39 1 10.6235 0.6433 2.6005 40 1 9.9940 2.2267 3.1150 41 1 9.3715 -0.9030 6.3590 42 1 4.0142 0.3757 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416147727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:58 Heat of formation + Delta-G solvation = -23.417093 kcal Electronic energy + Delta-G solvation = -26420.030799 eV Core-core repulsion = 22560.836632 eV Total energy + Delta-G solvation = -3859.194167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.90384 -40.82195 -40.54380 -37.40638 -37.26436 -35.65850 -34.80426 -32.13824 -31.72298 -30.60497 -29.84648 -27.99357 -27.59719 -27.26717 -24.54869 -23.59257 -23.38894 -21.62354 -19.96146 -19.44225 -18.55073 -18.41970 -17.96886 -17.59092 -17.22070 -16.91585 -16.73330 -16.50324 -16.22645 -16.04560 -15.22511 -14.79887 -14.62723 -14.57956 -14.26174 -14.09535 -13.96780 -13.46461 -13.39721 -13.36531 -13.05869 -12.99451 -12.92630 -12.69280 -12.60656 -12.45495 -12.24584 -12.17644 -12.12589 -11.91031 -11.83760 -11.17543 -10.77126 -10.50396 -10.10033 -9.36628 -9.10355 -8.13889 -6.30623 -0.54955 0.18848 0.83952 1.38669 1.42306 1.44170 1.53807 1.69100 2.19661 2.31546 2.43784 2.52914 2.94694 3.14505 3.14888 3.50983 3.64310 3.79369 3.94148 4.08211 4.19841 4.27683 4.37965 4.43221 4.46121 4.55794 4.71771 4.74110 4.81360 4.83631 4.88461 4.90842 5.01930 5.04867 5.05382 5.10569 5.27228 5.46253 5.60277 5.66659 6.02249 6.07719 6.15656 6.34352 6.75596 6.77420 7.27073 7.44229 8.90691 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.003715 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.243371 B = 7535.378245 C = 8971.959080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.099 3.901 4 C -0.131 4.131 5 C -0.082 4.082 6 C 0.023 3.977 7 O -0.108 6.108 8 N -0.306 5.306 9 C 0.154 3.846 10 C -0.065 4.065 11 C 0.502 3.498 12 O -0.602 6.602 13 N -0.594 5.594 14 C 0.074 3.926 15 C 0.262 3.738 16 H 0.005 0.995 17 C -0.134 4.134 18 C -0.536 4.536 19 H 0.065 0.935 20 C 0.013 3.987 21 N -0.920 5.920 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.269 1.269 26 C -0.163 4.163 27 C -0.093 4.093 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.187 0.813 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.018 0.982 41 H 0.264 0.736 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 1.136 -17.517 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.246 6.246 3 C 0.053 3.947 4 C -0.151 4.151 5 C -0.101 4.101 6 C -0.030 4.030 7 O -0.120 6.120 8 N -0.049 5.049 9 C -0.027 4.027 10 C -0.105 4.105 11 C 0.289 3.711 12 O -0.484 6.484 13 N -0.324 5.324 14 C -0.068 4.068 15 C 0.160 3.840 16 H 0.023 0.977 17 C -0.193 4.193 18 C -0.574 4.574 19 H 0.084 0.916 20 C -0.186 4.186 21 N -0.559 5.559 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.215 1.215 25 H -0.193 1.193 26 C -0.166 4.166 27 C -0.114 4.114 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.204 0.796 32 H 0.191 0.809 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.269 2.353 -16.867 22.219 hybrid contribution -0.262 -1.172 0.952 1.533 sum -14.532 1.181 -15.915 21.584 Atomic orbital electron populations 1.23462 0.75805 1.05958 1.02854 1.86113 1.23966 1.25641 1.88859 1.18742 0.91347 0.85746 0.98851 1.21625 1.02308 0.89623 1.01511 1.20209 0.87674 1.00315 1.01885 1.20674 0.94120 0.86641 1.01535 1.89062 1.12156 1.28262 1.82527 1.79733 0.93403 1.11627 1.20169 1.24145 0.95008 0.92068 0.91477 1.20458 0.94133 1.00769 0.95106 1.20710 0.80553 0.78867 0.90978 1.90689 1.54969 1.54462 1.48266 1.48190 1.28658 1.46360 1.09235 1.21988 0.97086 0.99513 0.88199 1.18544 0.92532 0.94900 0.78023 0.97705 1.21896 0.97898 0.96426 1.03037 1.21578 1.45983 0.92118 0.97735 0.91647 1.25762 0.94546 1.02722 0.95576 1.70037 1.46050 1.36473 1.03333 0.85441 0.78850 0.79576 0.77069 1.19169 1.21453 1.19312 1.20462 0.90763 0.95152 1.10267 1.19903 0.92850 0.96299 1.02351 0.86491 0.91404 0.90435 0.79634 0.80892 0.83147 0.82392 0.91633 0.88032 0.90896 0.91474 0.92865 0.96332 0.92726 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.84 10.49 -93.31 -0.98 -7.82 16 3 C 0.10 2.26 6.68 22.46 0.15 2.41 16 4 C -0.13 -2.28 9.01 22.39 0.20 -2.08 16 5 C -0.08 -1.69 10.05 22.32 0.22 -1.47 16 6 C 0.02 0.70 7.48 22.97 0.17 0.87 16 7 O -0.11 -3.81 12.07 28.72 0.35 -3.46 16 8 N -0.31 -11.28 12.81 -43.47 -0.56 -11.83 16 9 C 0.15 5.15 5.95 45.04 0.27 5.42 16 10 C -0.06 -1.80 4.85 29.10 0.14 -1.66 16 11 C 0.50 20.63 7.67 87.66 0.67 21.31 16 12 O -0.60 -31.85 15.36 -3.04 -0.05 -31.89 16 13 N -0.59 -24.40 2.75 -826.77 -2.28 -26.67 16 14 C 0.07 2.09 9.48 127.77 1.21 3.30 16 15 C 0.26 13.66 2.64 44.25 0.12 13.77 16 16 H 0.00 0.32 6.90 -2.39 -0.02 0.30 16 17 C -0.13 -6.49 8.95 71.98 0.64 -5.85 16 18 C -0.54 -28.82 8.37 25.60 0.21 -28.60 16 19 H 0.07 3.36 7.64 -2.91 -0.02 3.34 16 20 C 0.01 0.73 5.30 84.66 0.45 1.18 16 21 N -0.92 -53.48 11.32 21.45 0.24 -53.24 16 22 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C -0.16 -5.14 6.32 -20.21 -0.13 -5.27 16 27 C -0.09 -2.60 10.03 22.58 0.23 -2.37 16 28 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.54 7.65 -2.39 -0.02 0.53 16 30 H 0.08 0.45 7.65 -2.39 -0.02 0.43 16 31 H 0.19 1.54 6.26 -2.91 -0.02 1.53 16 32 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.15 3.15 7.40 -2.39 -0.02 3.13 16 34 H 0.16 3.14 8.11 -2.39 -0.02 3.12 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 1.90 6.44 -2.39 -0.02 1.88 16 37 H 0.07 2.13 6.43 -2.39 -0.02 2.12 16 38 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 39 H 0.05 2.29 6.66 -2.39 -0.02 2.27 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -81.43 354.33 5.49 -75.95 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.05 Total: 11.94 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.68 Total: 2.20 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -2.59 Total: -91.75 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.68 Total: -43.18 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -81.43 5.49 -75.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416147727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.528 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds