Wall clock time and date at job start Tue Mar 31 2020 13:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00004 * 2 1 4 4 C 1.52999 * 109.46809 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46850 * 65.00307 * 4 3 2 6 6 C 1.37102 * 119.99730 * 86.78952 * 5 4 3 7 7 H 1.08003 * 119.99334 * 221.33792 * 6 5 4 8 8 C 1.38943 * 120.00254 * 41.33862 * 6 5 4 9 9 N 1.31412 * 120.00366 * 18.20221 * 8 6 5 10 10 Si 1.86800 * 120.00204 * 198.19446 * 8 6 5 11 11 H 1.48504 * 109.46991 * 60.00148 * 10 8 6 12 12 H 1.48497 * 109.47493 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47430 * 300.00563 * 10 8 6 14 14 C 1.34773 * 119.99891 * 266.78250 * 5 4 3 15 15 O 1.21289 * 120.00150 * 6.42533 * 14 5 4 16 16 C 1.50707 * 119.99766 * 186.42043 * 14 5 4 17 17 H 1.09000 * 109.47183 * 306.66349 * 16 14 5 18 18 C 1.52995 * 109.46853 * 66.66687 * 16 14 5 19 19 O 1.42899 * 109.46931 * 186.66879 * 16 14 5 20 20 C 1.35754 * 117.00347 * 155.29171 * 19 16 14 21 21 C 1.38961 * 119.90137 * 1.77148 * 20 19 16 22 22 C 1.37730 * 120.09603 * 179.72627 * 21 20 19 23 23 C 1.39765 * 119.90089 * 0.54506 * 22 21 20 24 24 C 1.43201 * 120.09413 * 179.70415 * 23 22 21 25 25 N 9.76641 * 100.46637 * 108.57563 * 5 1 2 26 26 C 1.39746 * 119.81151 * 359.72841 * 23 22 21 27 27 C 1.37733 * 119.90758 * 359.97438 * 26 23 22 28 28 H 1.09001 * 109.46791 * 299.99479 * 1 2 3 29 29 H 1.08999 * 109.47316 * 59.99792 * 1 2 3 30 30 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46770 * 60.00538 * 3 2 1 32 32 H 1.08998 * 109.47074 * 300.00363 * 3 2 1 33 33 H 1.08996 * 109.47501 * 304.99903 * 4 3 2 34 34 H 1.09000 * 109.46841 * 184.99754 * 4 3 2 35 35 H 0.96997 * 120.00163 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47031 * 63.98326 * 18 16 14 37 37 H 1.09001 * 109.46592 * 183.97721 * 18 16 14 38 38 H 1.08994 * 109.47136 * 303.97707 * 18 16 14 39 39 H 1.08001 * 119.95563 * 359.97438 * 21 20 19 40 40 H 1.08002 * 120.05879 * 180.24887 * 22 21 20 41 41 H 1.08007 * 120.05241 * 179.97438 * 26 23 22 42 42 H 1.07995 * 119.95897 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2049 1.3401 -2.3578 7 1 3.8824 1.0008 -3.3311 8 6 4.8510 2.5633 -2.2273 9 7 5.5526 2.8239 -1.1472 10 14 4.7227 3.8372 -3.5875 11 1 3.2979 4.2039 -3.7894 12 1 5.4965 5.0464 -3.2079 13 1 5.2720 3.2738 -4.8469 14 6 4.1582 -0.7700 -1.3142 15 8 3.8460 -1.4698 -0.3740 16 6 4.7489 -1.3921 -2.5533 17 1 4.1786 -1.0750 -3.4263 18 6 6.2041 -0.9446 -2.7044 19 8 4.6974 -2.8159 -2.4423 20 6 4.6896 -3.5245 -3.6002 21 6 4.7680 -2.8613 -4.8188 22 6 4.7660 -3.5766 -5.9958 23 6 4.6735 -4.9708 -5.9636 24 6 4.6648 -5.7182 -7.1851 25 7 4.6558 -6.3090 -8.1563 26 6 4.5892 -5.6333 -4.7361 27 6 4.5980 -4.9107 -3.5636 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 6.0033 3.6780 -1.0560 36 1 6.7894 -1.3224 -1.8660 37 1 6.6099 -1.3370 -3.6368 38 1 6.2498 0.1443 -2.7180 39 1 4.8345 -1.7836 -4.8429 40 1 4.8310 -3.0607 -6.9424 41 1 4.5172 -6.7106 -4.7067 42 1 4.5324 -5.4218 -2.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457184019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:10 Heat of formation + Delta-G solvation = -51.777253 kcal Electronic energy + Delta-G solvation = -26686.119772 eV Core-core repulsion = 22825.695816 eV Total energy + Delta-G solvation = -3860.423956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33181 -38.82722 -37.67711 -36.83878 -36.01894 -34.79246 -31.93661 -31.73036 -30.95242 -30.09348 -28.81973 -25.82008 -25.11282 -24.31809 -23.11911 -22.94313 -21.34369 -19.32555 -18.92309 -17.95433 -17.33203 -16.02830 -15.75917 -15.47426 -15.44843 -15.07188 -14.70965 -14.50561 -14.38260 -14.31789 -13.98383 -13.80938 -13.57133 -13.27951 -13.21241 -12.75127 -12.54135 -12.18825 -12.04292 -11.94737 -11.74246 -11.60558 -11.38869 -11.31810 -11.16129 -11.08249 -10.73876 -10.64795 -10.55424 -10.29574 -10.27226 -9.23625 -9.16690 -9.03031 -8.44555 -8.08217 -7.59066 -6.53318 -4.30070 0.85676 1.26391 2.63701 2.94080 3.00061 3.10151 3.10811 3.26027 3.79457 3.85925 3.91479 3.98452 4.49577 4.68238 4.71831 4.79529 4.87003 5.09889 5.35642 5.47470 5.53021 5.63037 5.68929 5.72165 5.81224 5.88224 5.96994 5.99644 6.04168 6.08621 6.19468 6.25755 6.27283 6.37628 6.39093 6.60398 6.76035 6.90618 7.06646 7.25803 7.46493 7.60849 7.79994 7.85514 8.21759 8.92598 9.36634 9.83485 10.47288 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.003921 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.115549 B = 7140.201082 C = 8333.723366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.434 5.434 6 C -0.346 4.346 7 H 0.085 0.915 8 C 0.049 3.951 9 N -0.857 5.857 10 Si 0.910 3.090 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.487 3.513 15 O -0.564 6.564 16 C 0.082 3.918 17 H 0.090 0.910 18 C -0.167 4.167 19 O -0.281 6.281 20 C 0.181 3.819 21 C -0.219 4.219 22 C -0.024 4.024 23 C -0.093 4.093 24 C 0.268 3.732 25 N -0.440 5.440 26 C -0.029 4.029 27 C -0.161 4.161 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.273 0.727 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -4.128 -3.360 5.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.155 5.155 6 C -0.474 4.474 7 H 0.102 0.898 8 C -0.158 4.158 9 N -0.492 5.492 10 Si 0.736 3.264 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.274 3.726 15 O -0.446 6.446 16 C 0.023 3.977 17 H 0.107 0.893 18 C -0.224 4.224 19 O -0.192 6.192 20 C 0.132 3.868 21 C -0.238 4.238 22 C -0.044 4.044 23 C -0.097 4.097 24 C -0.047 4.047 25 N -0.117 5.117 26 C -0.049 4.049 27 C -0.180 4.180 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.163 0.837 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.257 -5.434 -4.059 7.149 hybrid contribution -0.295 1.568 -0.536 1.684 sum -2.552 -3.866 -4.595 6.525 Atomic orbital electron populations 1.22627 0.83379 1.01686 0.98825 1.88169 1.17479 1.27870 1.95072 1.23099 0.96440 0.84466 0.98908 1.21454 0.89553 1.01564 0.87618 1.43061 1.58145 1.03577 1.10730 1.19293 1.38207 1.01888 0.87968 0.89755 1.25402 0.93646 0.99217 0.97521 1.69859 1.27178 1.24093 1.28096 0.86265 0.78722 0.80191 0.81184 1.19781 1.20779 1.19530 1.19757 0.81431 0.83842 0.87577 1.90602 1.53480 1.61644 1.38878 1.22257 0.98926 0.76549 0.99979 0.89281 1.22226 0.93263 1.05630 1.01323 1.86222 1.85474 1.20301 1.27169 1.19503 0.89679 0.91886 0.85739 1.21393 1.09284 1.01581 0.91535 1.20912 0.93585 0.91495 0.98447 1.15853 1.14593 0.92076 0.87147 1.25755 0.92894 0.93194 0.92824 1.81265 1.10574 1.08985 1.10838 1.20882 0.94397 0.99793 0.89837 1.20373 1.07445 0.90895 0.99258 0.95142 0.94972 0.90550 0.94342 0.93333 0.91692 0.86653 0.91678 0.92082 0.92762 0.87312 0.83718 0.84980 0.84686 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.63 9.60 -42.17 -0.40 -8.04 16 3 C 0.05 0.95 6.27 37.16 0.23 1.18 16 4 C 0.12 2.70 5.45 -4.04 -0.02 2.68 16 5 N -0.43 -9.99 2.46 -114.81 -0.28 -10.27 16 6 C -0.35 -7.68 6.70 -14.93 -0.10 -7.78 16 7 H 0.08 1.79 7.05 -52.48 -0.37 1.42 16 8 C 0.05 1.09 5.02 -17.47 -0.09 1.00 16 9 N -0.86 -20.01 11.50 55.50 0.64 -19.37 16 10 Si 0.91 17.32 29.59 -169.99 -5.03 12.29 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 14 C 0.49 11.35 6.75 -10.98 -0.07 11.27 16 15 O -0.56 -14.84 15.31 -19.60 -0.30 -15.14 16 16 C 0.08 1.55 1.94 -27.88 -0.05 1.50 16 17 H 0.09 1.57 5.24 -51.93 -0.27 1.30 16 18 C -0.17 -2.93 9.10 37.16 0.34 -2.60 16 19 O -0.28 -5.21 9.33 -38.79 -0.36 -5.57 16 20 C 0.18 2.66 6.61 -39.04 -0.26 2.40 16 21 C -0.22 -2.80 8.29 -39.50 -0.33 -3.13 16 22 C -0.02 -0.26 9.75 -39.20 -0.38 -0.64 16 23 C -0.09 -1.03 5.74 -106.84 -0.61 -1.64 16 24 C 0.27 3.27 15.33 -22.44 -0.34 2.93 16 25 N -0.44 -6.27 18.54 41.87 0.78 -5.49 16 26 C -0.03 -0.30 9.75 -39.20 -0.38 -0.68 16 27 C -0.16 -1.98 9.97 -39.50 -0.39 -2.37 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.52 7.42 -51.93 -0.39 1.14 16 34 H 0.12 2.62 5.65 -51.93 -0.29 2.33 16 35 H 0.27 6.08 8.31 -40.82 -0.34 5.74 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.79 7.10 -51.93 -0.37 0.42 16 38 H 0.11 2.12 6.30 -51.93 -0.33 1.79 16 39 H 0.15 1.81 5.47 -52.49 -0.29 1.52 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -28.45 360.90 -6.13 -34.57 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.24 Total: 5.84 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.35 Total: 5.74 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 1.13 Total: -35.13 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.07 Total: -28.75 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.45 -6.13 -34.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.204 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds