Wall clock time and date at job start Tue Mar 31 2020 13:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00004 * 2 1 4 4 C 1.52999 * 109.46809 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46850 * 65.00307 * 4 3 2 6 6 C 1.37102 * 119.99730 * 86.78952 * 5 4 3 7 7 H 1.08003 * 119.99334 * 221.33792 * 6 5 4 8 8 C 1.38943 * 120.00254 * 41.33862 * 6 5 4 9 9 N 1.31412 * 120.00366 * 18.20221 * 8 6 5 10 10 Si 1.86800 * 120.00204 * 198.19446 * 8 6 5 11 11 H 1.48504 * 109.46991 * 60.00148 * 10 8 6 12 12 H 1.48497 * 109.47493 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47430 * 300.00563 * 10 8 6 14 14 C 1.34773 * 119.99891 * 266.78250 * 5 4 3 15 15 O 1.21289 * 120.00150 * 6.42533 * 14 5 4 16 16 C 1.50707 * 119.99766 * 186.42043 * 14 5 4 17 17 H 1.09000 * 109.47183 * 306.66349 * 16 14 5 18 18 C 1.52995 * 109.46853 * 66.66687 * 16 14 5 19 19 O 1.42899 * 109.46931 * 186.66879 * 16 14 5 20 20 C 1.35754 * 117.00347 * 155.29171 * 19 16 14 21 21 C 1.38961 * 119.90137 * 1.77148 * 20 19 16 22 22 C 1.37730 * 120.09603 * 179.72627 * 21 20 19 23 23 C 1.39765 * 119.90089 * 0.54506 * 22 21 20 24 24 C 1.43201 * 120.09413 * 179.70415 * 23 22 21 25 25 N 9.76641 * 100.46637 * 108.57563 * 5 1 2 26 26 C 1.39746 * 119.81151 * 359.72841 * 23 22 21 27 27 C 1.37733 * 119.90758 * 359.97438 * 26 23 22 28 28 H 1.09001 * 109.46791 * 299.99479 * 1 2 3 29 29 H 1.08999 * 109.47316 * 59.99792 * 1 2 3 30 30 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46770 * 60.00538 * 3 2 1 32 32 H 1.08998 * 109.47074 * 300.00363 * 3 2 1 33 33 H 1.08996 * 109.47501 * 304.99903 * 4 3 2 34 34 H 1.09000 * 109.46841 * 184.99754 * 4 3 2 35 35 H 0.96997 * 120.00163 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47031 * 63.98326 * 18 16 14 37 37 H 1.09001 * 109.46592 * 183.97721 * 18 16 14 38 38 H 1.08994 * 109.47136 * 303.97707 * 18 16 14 39 39 H 1.08001 * 119.95563 * 359.97438 * 21 20 19 40 40 H 1.08002 * 120.05879 * 180.24887 * 22 21 20 41 41 H 1.08007 * 120.05241 * 179.97438 * 26 23 22 42 42 H 1.07995 * 119.95897 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2049 1.3401 -2.3578 7 1 3.8824 1.0008 -3.3311 8 6 4.8510 2.5633 -2.2273 9 7 5.5526 2.8239 -1.1472 10 14 4.7227 3.8372 -3.5875 11 1 3.2979 4.2039 -3.7894 12 1 5.4965 5.0464 -3.2079 13 1 5.2720 3.2738 -4.8469 14 6 4.1582 -0.7700 -1.3142 15 8 3.8460 -1.4698 -0.3740 16 6 4.7489 -1.3921 -2.5533 17 1 4.1786 -1.0750 -3.4263 18 6 6.2041 -0.9446 -2.7044 19 8 4.6974 -2.8159 -2.4423 20 6 4.6896 -3.5245 -3.6002 21 6 4.7680 -2.8613 -4.8188 22 6 4.7660 -3.5766 -5.9958 23 6 4.6735 -4.9708 -5.9636 24 6 4.6648 -5.7182 -7.1851 25 7 4.6558 -6.3090 -8.1563 26 6 4.5892 -5.6333 -4.7361 27 6 4.5980 -4.9107 -3.5636 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 6.0033 3.6780 -1.0560 36 1 6.7894 -1.3224 -1.8660 37 1 6.6099 -1.3370 -3.6368 38 1 6.2498 0.1443 -2.7180 39 1 4.8345 -1.7836 -4.8429 40 1 4.8310 -3.0607 -6.9424 41 1 4.5172 -6.7106 -4.7067 42 1 4.5324 -5.4218 -2.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457184019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:08 Heat of formation + Delta-G solvation = -66.485410 kcal Electronic energy + Delta-G solvation = -26686.757566 eV Core-core repulsion = 22825.695816 eV Total energy + Delta-G solvation = -3861.061749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.56216 -40.32479 -38.94466 -38.31679 -37.10653 -36.56476 -33.52430 -33.21613 -31.97949 -31.21552 -30.35077 -27.19229 -26.82587 -25.66665 -24.30821 -24.03798 -22.80580 -20.99105 -19.91828 -19.29455 -18.80868 -17.64888 -17.16237 -17.04301 -16.78304 -16.40685 -16.05760 -16.00258 -15.82361 -15.50180 -15.06621 -14.93785 -14.74168 -14.62858 -14.48718 -14.03999 -13.72481 -13.49361 -13.38765 -13.28697 -13.17896 -13.07133 -12.83230 -12.72412 -12.61938 -12.52383 -12.27011 -12.04923 -11.93282 -11.84956 -11.62692 -10.93199 -10.50966 -10.18173 -10.05507 -9.37353 -9.19560 -8.24362 -6.06754 -0.12107 0.36129 1.49515 1.56662 1.62790 1.66147 1.91816 1.96955 2.08024 2.39529 2.91243 2.93331 3.03070 3.10541 3.21191 3.78023 3.90993 3.99983 4.19208 4.21110 4.24128 4.33578 4.41195 4.48087 4.54869 4.59255 4.61459 4.67999 4.81275 4.82957 4.88458 5.01413 5.04737 5.12008 5.28694 5.31738 5.37520 5.41874 5.51686 5.66066 6.07018 6.37131 6.42651 6.50255 6.52118 7.18675 7.60540 8.08938 8.77336 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.003921 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.115549 B = 7140.201082 C = 8333.723366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.058 3.942 4 C 0.119 3.881 5 N -0.438 5.438 6 C -0.354 4.354 7 H 0.095 0.905 8 C 0.019 3.981 9 N -0.886 5.886 10 Si 0.972 3.028 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.259 1.259 14 C 0.468 3.532 15 O -0.607 6.607 16 C 0.093 3.907 17 H 0.103 0.897 18 C -0.154 4.154 19 O -0.309 6.309 20 C 0.151 3.849 21 C -0.221 4.221 22 C -0.015 4.015 23 C -0.088 4.088 24 C 0.290 3.710 25 N -0.473 5.473 26 C -0.014 4.014 27 C -0.164 4.164 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.274 0.726 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.165 0.835 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -4.253 -5.549 7.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.019 4.019 4 C -0.005 4.005 5 N -0.158 5.158 6 C -0.481 4.481 7 H 0.113 0.887 8 C -0.186 4.186 9 N -0.523 5.523 10 Si 0.796 3.204 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.183 1.183 14 C 0.257 3.743 15 O -0.492 6.492 16 C 0.035 3.965 17 H 0.120 0.880 18 C -0.212 4.212 19 O -0.221 6.221 20 C 0.103 3.897 21 C -0.240 4.240 22 C -0.035 4.035 23 C -0.091 4.091 24 C -0.024 4.024 25 N -0.150 5.150 26 C -0.034 4.034 27 C -0.183 4.183 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.182 0.818 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.820 -5.561 -6.273 8.845 hybrid contribution -0.144 1.520 0.149 1.534 sum -2.965 -4.041 -6.125 7.914 Atomic orbital electron populations 1.22845 0.80773 1.02937 1.00410 1.88116 1.20441 1.28366 1.95372 1.22933 0.94424 0.84533 1.00049 1.21409 0.91776 1.00352 0.86919 1.43291 1.57603 1.03885 1.11036 1.19576 1.38400 1.02042 0.88108 0.88700 1.26073 0.92872 1.00394 0.99253 1.69961 1.27932 1.24503 1.29863 0.85300 0.78453 0.77578 0.79025 1.19627 1.21342 1.18338 1.20549 0.81160 0.83892 0.88738 1.90551 1.55352 1.62512 1.40778 1.21992 0.99239 0.77371 0.97919 0.87959 1.22092 0.92494 1.04194 1.02384 1.86168 1.86747 1.19673 1.29491 1.19852 0.91898 0.92611 0.85322 1.21412 1.09469 1.01761 0.91350 1.21119 0.92142 0.91434 0.98792 1.15921 1.14166 0.92156 0.86901 1.25722 0.91871 0.92386 0.92414 1.81305 1.11730 1.10071 1.11867 1.21128 0.92477 1.01111 0.88686 1.20529 1.07314 0.90131 1.00303 0.92962 0.93845 0.89575 0.91802 0.93331 0.94200 0.87449 0.91641 0.93572 0.89469 0.89249 0.83546 0.82538 0.81791 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.86 9.60 -142.34 -1.37 -18.22 16 3 C 0.06 2.28 6.27 71.98 0.45 2.73 16 4 C 0.12 5.47 5.45 86.38 0.47 5.94 16 5 N -0.44 -20.65 2.46 -635.54 -1.56 -22.22 16 6 C -0.35 -15.70 6.70 84.04 0.56 -15.14 16 7 H 0.10 3.94 7.05 -2.91 -0.02 3.92 16 8 C 0.02 0.82 5.02 84.92 0.43 1.25 16 9 N -0.89 -41.89 11.50 21.66 0.25 -41.64 16 10 Si 0.97 34.59 29.59 68.60 2.03 36.62 16 11 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 12 H -0.29 -10.43 7.11 99.48 0.71 -9.73 16 13 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 14 C 0.47 22.52 6.75 87.66 0.59 23.11 16 15 O -0.61 -33.38 15.31 20.99 0.32 -33.06 16 16 C 0.09 3.59 1.94 29.85 0.06 3.65 16 17 H 0.10 3.56 5.24 -2.39 -0.01 3.55 16 18 C -0.15 -5.42 9.10 71.98 0.65 -4.76 16 19 O -0.31 -11.57 9.33 -71.84 -0.67 -12.24 16 20 C 0.15 4.27 6.61 22.62 0.15 4.42 16 21 C -0.22 -5.21 8.29 22.32 0.19 -5.02 16 22 C -0.01 -0.27 9.75 22.52 0.22 -0.05 16 23 C -0.09 -1.67 5.74 -21.30 -0.12 -1.79 16 24 C 0.29 6.26 15.33 88.32 1.35 7.61 16 25 N -0.47 -12.42 18.54 19.02 0.35 -12.07 16 26 C -0.01 -0.25 9.75 22.52 0.22 -0.03 16 27 C -0.16 -3.77 9.97 22.32 0.22 -3.55 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.98 7.42 -2.39 -0.02 1.96 16 34 H 0.11 5.05 5.65 -2.39 -0.01 5.04 16 35 H 0.27 12.31 8.31 -92.71 -0.77 11.54 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 2.42 7.10 -2.39 -0.02 2.41 16 38 H 0.09 3.50 6.30 -2.39 -0.02 3.49 16 39 H 0.15 3.36 5.47 -2.91 -0.02 3.34 16 40 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 41 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -63.08 360.90 7.10 -55.98 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 1.05 Total: 26.41 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 6.69 Total: 20.43 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -0.96 Total: -75.92 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -1.72 Total: -63.52 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -63.08 7.10 -55.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.502 kcal (2) G-P(sol) polarization free energy of solvation -63.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds