Wall clock time and date at job start Tue Mar 31 2020 13:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 113.99928 * 2 1 4 4 C 1.53005 * 109.47369 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47301 * 64.99251 * 4 3 2 6 6 C 1.37101 * 120.00470 * 270.00406 * 5 4 3 7 7 H 1.08001 * 119.99655 * 342.66641 * 6 5 4 8 8 C 1.38947 * 120.00109 * 162.66368 * 6 5 4 9 9 N 1.31413 * 119.99931 * 342.57171 * 8 6 5 10 10 Si 1.86804 * 119.99778 * 162.57142 * 8 6 5 11 11 H 1.48496 * 109.47134 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47034 * 120.00097 * 10 8 6 13 13 H 1.48504 * 109.46801 * 240.00283 * 10 8 6 14 14 C 1.34781 * 119.99918 * 90.00192 * 5 4 3 15 15 O 1.21294 * 120.00157 * 127.79234 * 14 5 4 16 16 C 1.50704 * 120.00141 * 307.79721 * 14 5 4 17 17 H 1.08999 * 109.46843 * 53.39731 * 16 14 5 18 18 C 1.53002 * 109.46971 * 293.40454 * 16 14 5 19 19 O 1.42893 * 109.47013 * 173.40163 * 16 14 5 20 20 C 1.35757 * 116.99866 * 210.84250 * 19 16 14 21 21 C 1.38958 * 119.90844 * 84.77208 * 20 19 16 22 22 C 1.37737 * 120.09873 * 179.97438 * 21 20 19 23 23 C 1.39758 * 119.90066 * 359.97438 * 22 21 20 24 24 C 1.43201 * 120.09292 * 179.97438 * 23 22 21 25 25 N 9.28394 * 117.16547 * 147.79119 * 3 1 2 26 26 C 1.39759 * 119.81494 * 0.25188 * 23 22 21 27 27 C 1.37735 * 119.89971 * 359.49195 * 26 23 22 28 28 H 1.09002 * 109.47074 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.47588 * 60.00368 * 1 2 3 30 30 H 1.09005 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47785 * 59.99891 * 3 2 1 32 32 H 1.09006 * 109.46845 * 299.99705 * 3 2 1 33 33 H 1.09001 * 109.46535 * 304.99348 * 4 3 2 34 34 H 1.08994 * 109.47132 * 184.99772 * 4 3 2 35 35 H 0.97003 * 119.99535 * 185.00479 * 9 8 6 36 36 H 1.09001 * 109.46996 * 53.84994 * 18 16 14 37 37 H 1.08997 * 109.47213 * 173.84568 * 18 16 14 38 38 H 1.09005 * 109.46807 * 293.84665 * 18 16 14 39 39 H 1.07998 * 119.95420 * 359.95524 * 21 20 19 40 40 H 1.07999 * 120.04971 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.04683 * 179.74752 * 26 23 22 42 42 H 1.07998 * 119.95249 * 180.25191 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.0970 -0.7987 -1.3368 7 1 4.1455 -1.3931 -0.4364 8 6 4.1573 -1.4153 -2.5805 9 7 3.7627 -0.7687 -3.6543 10 14 4.7995 -3.1634 -2.7261 11 1 5.1778 -3.6654 -1.3807 12 1 3.7416 -4.0332 -3.3000 13 1 5.9902 -3.1810 -3.6133 14 6 4.2615 1.3336 -2.3218 15 8 5.3242 1.2077 -2.8929 16 6 3.2608 2.3503 -2.8078 17 1 2.9691 2.9972 -1.9804 18 6 2.0255 1.6301 -3.3520 19 8 3.8481 3.1387 -3.8448 20 6 3.4241 4.4234 -3.9574 21 6 4.0025 5.4151 -3.1745 22 6 3.5756 6.7199 -3.2860 23 6 2.5596 7.0459 -4.1886 24 6 2.1123 8.4010 -4.3074 25 7 1.7585 9.4753 -4.4026 26 6 1.9773 6.0446 -4.9706 27 6 2.4139 4.7433 -4.8566 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8514 0.5684 0.8410 34 1 3.9784 2.1765 0.0889 35 1 3.7362 -1.2224 -4.5113 36 1 1.6412 0.9457 -2.5957 37 1 1.2584 2.3630 -3.6021 38 1 2.2968 1.0686 -4.2461 39 1 4.7876 5.1624 -2.4774 40 1 4.0254 7.4900 -2.6768 41 1 1.1891 6.2916 -5.6664 42 1 1.9673 3.9695 -5.4634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457184022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:14 Heat of formation + Delta-G solvation = -29.894835 kcal Electronic energy + Delta-G solvation = -27141.728579 eV Core-core repulsion = 23282.253516 eV Total energy + Delta-G solvation = -3859.475063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.08388 -38.81787 -37.54005 -36.96387 -36.10740 -34.22525 -32.00170 -31.33456 -31.21857 -29.77185 -28.79903 -25.90093 -24.96755 -23.96112 -23.08518 -22.69195 -21.85613 -19.32201 -19.03914 -17.71758 -16.87014 -16.26153 -15.99670 -15.83238 -15.09307 -14.92875 -14.72856 -14.40192 -14.30846 -14.11811 -13.81495 -13.74629 -13.67381 -13.33963 -13.08612 -12.67696 -12.48065 -12.29305 -11.96316 -11.82297 -11.63487 -11.45213 -11.24555 -11.17142 -11.06228 -10.89548 -10.70074 -10.56297 -10.37536 -10.02360 -9.65841 -9.21419 -9.11557 -8.99704 -8.64665 -8.20552 -7.30531 -6.09072 -3.50030 0.57331 1.19231 2.51393 2.71989 3.31977 3.42431 3.44989 3.54703 3.74574 3.82611 4.03854 4.30019 4.39382 4.70235 4.74901 4.96492 5.18240 5.31545 5.34967 5.42217 5.48332 5.51940 5.53971 5.67467 5.76912 5.80100 5.85012 5.88002 5.92452 5.94570 6.03483 6.12560 6.14263 6.39143 6.42076 6.45308 6.51110 6.67993 7.25580 7.32232 7.65535 7.71339 7.84178 8.17555 9.05876 9.31259 9.62398 10.07032 11.04103 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003812 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.730306 B = 7342.832481 C = 8140.632985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.036 3.964 4 C 0.123 3.877 5 N -0.514 5.514 6 C -0.282 4.282 7 H 0.086 0.914 8 C 0.029 3.971 9 N -0.870 5.870 10 Si 0.920 3.080 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.286 1.286 14 C 0.554 3.446 15 O -0.504 6.504 16 C 0.087 3.913 17 H 0.057 0.943 18 C -0.147 4.147 19 O -0.311 6.311 20 C 0.148 3.852 21 C -0.149 4.149 22 C -0.053 4.053 23 C -0.056 4.056 24 C 0.264 3.736 25 N -0.431 5.431 26 C -0.054 4.054 27 C -0.141 4.141 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 9.179 3.376 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.043 4.043 4 C -0.002 4.002 5 N -0.242 5.242 6 C -0.409 4.409 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.510 5.510 10 Si 0.749 3.251 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.212 1.212 14 C 0.341 3.659 15 O -0.377 6.377 16 C 0.028 3.972 17 H 0.074 0.926 18 C -0.204 4.204 19 O -0.227 6.227 20 C 0.102 3.898 21 C -0.167 4.167 22 C -0.074 4.074 23 C -0.060 4.060 24 C -0.051 4.051 25 N -0.106 5.106 26 C -0.075 4.075 27 C -0.159 4.159 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.343 10.485 2.597 12.526 hybrid contribution -0.286 -1.002 -0.046 1.043 sum -6.629 9.483 2.551 11.848 Atomic orbital electron populations 1.22654 0.83084 1.02039 0.98754 1.88145 1.17611 1.26746 1.94950 1.23421 0.96714 0.85400 0.98778 1.21417 0.90612 0.97645 0.90558 1.42819 1.67301 1.05603 1.08512 1.19192 1.48750 0.79751 0.93208 0.89577 1.24949 0.97921 0.99045 0.95494 1.69473 1.44763 1.37134 0.99675 0.85976 0.78550 0.82594 0.77972 1.19971 1.21524 1.21190 1.18812 0.85920 0.80178 0.81002 1.90456 1.24338 1.65678 1.57196 1.22689 0.95327 0.91641 0.87527 0.92563 1.22115 0.93804 0.99489 1.05027 1.86160 1.63817 1.18393 1.54302 1.19249 0.91253 0.85992 0.93316 1.21515 1.01773 0.92373 1.01079 1.21004 0.94162 0.96397 0.95824 1.16005 1.01321 0.85730 1.02939 1.25687 0.93318 0.92722 0.93405 1.81197 1.08995 1.11764 1.08664 1.21021 0.98218 0.91331 0.96915 1.21474 0.96837 0.96779 1.00831 0.95304 0.94756 0.90254 0.94637 0.93471 0.90545 0.91660 0.92414 0.89981 0.94861 0.89130 0.84261 0.84805 0.84798 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.43 10.18 -35.23 -0.36 -6.79 16 3 C 0.04 0.56 5.72 37.16 0.21 0.78 16 4 C 0.12 2.20 5.60 -4.04 -0.02 2.17 16 5 N -0.51 -11.94 2.49 -114.81 -0.29 -12.23 16 6 C -0.28 -7.30 9.09 -14.93 -0.14 -7.44 16 7 H 0.09 2.19 7.87 -52.49 -0.41 1.78 16 8 C 0.03 0.78 4.90 -17.47 -0.09 0.69 16 9 N -0.87 -23.75 9.13 55.50 0.51 -23.25 16 10 Si 0.92 21.54 29.59 -169.99 -5.03 16.51 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.55 13.38 4.04 -10.98 -0.04 13.34 16 15 O -0.50 -14.48 15.94 -14.28 -0.23 -14.71 16 16 C 0.09 1.70 2.37 -27.88 -0.07 1.63 16 17 H 0.06 0.93 6.65 -51.93 -0.35 0.59 16 18 C -0.15 -2.79 8.16 37.16 0.30 -2.48 16 19 O -0.31 -6.01 9.23 -38.80 -0.36 -6.37 16 20 C 0.15 2.15 5.56 -39.04 -0.22 1.94 16 21 C -0.15 -1.81 9.97 -39.50 -0.39 -2.20 16 22 C -0.05 -0.53 9.75 -39.20 -0.38 -0.91 16 23 C -0.06 -0.58 5.74 -106.83 -0.61 -1.19 16 24 C 0.26 2.99 15.32 -22.51 -0.34 2.64 16 25 N -0.43 -5.75 18.53 41.80 0.77 -4.98 16 26 C -0.05 -0.54 9.75 -39.20 -0.38 -0.92 16 27 C -0.14 -1.70 9.97 -39.49 -0.39 -2.09 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.75 4.54 -51.93 -0.24 0.51 16 33 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 34 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.27 7.11 8.32 -40.82 -0.34 6.77 16 36 H 0.08 1.68 6.54 -51.93 -0.34 1.34 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.99 7.07 -51.93 -0.37 1.62 16 39 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -32.70 363.34 -6.43 -39.14 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.48 Total: -0.31 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.45 Total: 7.50 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.99 Total: -40.45 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.94 Total: -27.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.70 -6.43 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.242 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds