Wall clock time and date at job start Tue Mar 31 2020 13:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 113.99928 * 2 1 4 4 C 1.53005 * 109.47369 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47301 * 64.99251 * 4 3 2 6 6 C 1.37101 * 120.00470 * 270.00406 * 5 4 3 7 7 H 1.08001 * 119.99655 * 342.66641 * 6 5 4 8 8 C 1.38947 * 120.00109 * 162.66368 * 6 5 4 9 9 N 1.31413 * 119.99931 * 342.57171 * 8 6 5 10 10 Si 1.86804 * 119.99778 * 162.57142 * 8 6 5 11 11 H 1.48496 * 109.47134 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47034 * 120.00097 * 10 8 6 13 13 H 1.48504 * 109.46801 * 240.00283 * 10 8 6 14 14 C 1.34781 * 119.99918 * 90.00192 * 5 4 3 15 15 O 1.21294 * 120.00157 * 127.79234 * 14 5 4 16 16 C 1.50704 * 120.00141 * 307.79721 * 14 5 4 17 17 H 1.08999 * 109.46843 * 53.39731 * 16 14 5 18 18 C 1.53002 * 109.46971 * 293.40454 * 16 14 5 19 19 O 1.42893 * 109.47013 * 173.40163 * 16 14 5 20 20 C 1.35757 * 116.99866 * 210.84250 * 19 16 14 21 21 C 1.38958 * 119.90844 * 84.77208 * 20 19 16 22 22 C 1.37737 * 120.09873 * 179.97438 * 21 20 19 23 23 C 1.39758 * 119.90066 * 359.97438 * 22 21 20 24 24 C 1.43201 * 120.09292 * 179.97438 * 23 22 21 25 25 N 9.28394 * 117.16547 * 147.79119 * 3 1 2 26 26 C 1.39759 * 119.81494 * 0.25188 * 23 22 21 27 27 C 1.37735 * 119.89971 * 359.49195 * 26 23 22 28 28 H 1.09002 * 109.47074 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.47588 * 60.00368 * 1 2 3 30 30 H 1.09005 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47785 * 59.99891 * 3 2 1 32 32 H 1.09006 * 109.46845 * 299.99705 * 3 2 1 33 33 H 1.09001 * 109.46535 * 304.99348 * 4 3 2 34 34 H 1.08994 * 109.47132 * 184.99772 * 4 3 2 35 35 H 0.97003 * 119.99535 * 185.00479 * 9 8 6 36 36 H 1.09001 * 109.46996 * 53.84994 * 18 16 14 37 37 H 1.08997 * 109.47213 * 173.84568 * 18 16 14 38 38 H 1.09005 * 109.46807 * 293.84665 * 18 16 14 39 39 H 1.07998 * 119.95420 * 359.95524 * 21 20 19 40 40 H 1.07999 * 120.04971 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.04683 * 179.74752 * 26 23 22 42 42 H 1.07998 * 119.95249 * 180.25191 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.0970 -0.7987 -1.3368 7 1 4.1455 -1.3931 -0.4364 8 6 4.1573 -1.4153 -2.5805 9 7 3.7627 -0.7687 -3.6543 10 14 4.7995 -3.1634 -2.7261 11 1 5.1778 -3.6654 -1.3807 12 1 3.7416 -4.0332 -3.3000 13 1 5.9902 -3.1810 -3.6133 14 6 4.2615 1.3336 -2.3218 15 8 5.3242 1.2077 -2.8929 16 6 3.2608 2.3503 -2.8078 17 1 2.9691 2.9972 -1.9804 18 6 2.0255 1.6301 -3.3520 19 8 3.8481 3.1387 -3.8448 20 6 3.4241 4.4234 -3.9574 21 6 4.0025 5.4151 -3.1745 22 6 3.5756 6.7199 -3.2860 23 6 2.5596 7.0459 -4.1886 24 6 2.1123 8.4010 -4.3074 25 7 1.7585 9.4753 -4.4026 26 6 1.9773 6.0446 -4.9706 27 6 2.4139 4.7433 -4.8566 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6885 1.8463 -0.8901 33 1 3.8514 0.5684 0.8410 34 1 3.9784 2.1765 0.0889 35 1 3.7362 -1.2224 -4.5113 36 1 1.6412 0.9457 -2.5957 37 1 1.2584 2.3630 -3.6021 38 1 2.2968 1.0686 -4.2461 39 1 4.7876 5.1624 -2.4774 40 1 4.0254 7.4900 -2.6768 41 1 1.1891 6.2916 -5.6664 42 1 1.9673 3.9695 -5.4634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457184022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:13 Heat of formation + Delta-G solvation = -49.431518 kcal Electronic energy + Delta-G solvation = -27142.575753 eV Core-core repulsion = 23282.253516 eV Total energy + Delta-G solvation = -3860.322237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28399 -40.26934 -38.74078 -38.32605 -37.16102 -36.02135 -33.83849 -32.66277 -32.13942 -30.92033 -30.28411 -27.20623 -26.64820 -25.30571 -24.24256 -23.74230 -23.20085 -21.00628 -19.93580 -19.11547 -18.48769 -17.74448 -17.15172 -17.00097 -16.83907 -16.26528 -15.97082 -15.75792 -15.57029 -15.33853 -15.19185 -15.03544 -14.61035 -14.49249 -14.33467 -13.86792 -13.74882 -13.43228 -13.29516 -13.13742 -12.98554 -12.95446 -12.80477 -12.73684 -12.46572 -12.43611 -12.34348 -12.08789 -12.03308 -11.66968 -11.00762 -10.88367 -10.30518 -10.06685 -10.04568 -9.64436 -9.16104 -8.08712 -5.49260 -0.36523 0.34476 1.42179 1.50502 1.57591 1.61495 1.75610 2.02235 2.44675 2.54919 2.83629 2.93397 3.13222 3.37678 3.46347 3.91936 3.92134 3.98985 4.10313 4.23543 4.34937 4.44176 4.50122 4.52022 4.55921 4.62138 4.65744 4.73091 4.74684 4.93750 4.97545 4.99897 5.01384 5.10895 5.13264 5.26720 5.49594 5.60487 5.62940 5.71380 6.18890 6.43142 6.57745 6.63599 7.11808 7.45753 7.78998 8.19721 9.02771 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003812 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.730306 B = 7342.832481 C = 8140.632985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.396 6.396 3 C 0.041 3.959 4 C 0.114 3.886 5 N -0.528 5.528 6 C -0.285 4.285 7 H 0.084 0.916 8 C -0.022 4.022 9 N -0.889 5.889 10 Si 0.970 3.030 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.302 1.302 14 C 0.547 3.453 15 O -0.567 6.567 16 C 0.100 3.900 17 H 0.089 0.911 18 C -0.131 4.131 19 O -0.341 6.341 20 C 0.113 3.887 21 C -0.151 4.151 22 C -0.038 4.038 23 C -0.049 4.049 24 C 0.287 3.713 25 N -0.463 5.463 26 C -0.039 4.039 27 C -0.142 4.142 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.257 0.743 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 11.198 4.473 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.037 4.037 4 C -0.009 4.009 5 N -0.256 5.256 6 C -0.413 4.413 7 H 0.101 0.899 8 C -0.222 4.222 9 N -0.531 5.531 10 Si 0.798 3.202 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.230 1.230 14 C 0.338 3.662 15 O -0.444 6.444 16 C 0.041 3.959 17 H 0.106 0.894 18 C -0.189 4.189 19 O -0.258 6.258 20 C 0.068 3.932 21 C -0.169 4.169 22 C -0.058 4.058 23 C -0.053 4.053 24 C -0.028 4.028 25 N -0.139 5.139 26 C -0.060 4.060 27 C -0.161 4.161 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.032 12.521 3.742 15.339 hybrid contribution 0.230 -1.515 -0.334 1.568 sum -7.802 11.006 3.408 13.914 Atomic orbital electron populations 1.22799 0.81073 1.02767 1.00147 1.88081 1.19965 1.28140 1.95282 1.23318 0.94696 0.85096 1.00573 1.21685 0.92760 0.98616 0.87873 1.42958 1.67533 1.04884 1.10254 1.19349 1.47776 0.81278 0.92860 0.89858 1.25648 0.98761 1.02139 0.95692 1.69601 1.46066 1.37883 0.99509 0.85183 0.77386 0.79692 0.77892 1.18808 1.20843 1.22953 1.19695 0.85710 0.80496 0.80334 1.90411 1.26977 1.68153 1.58891 1.22338 0.93354 0.91377 0.88827 0.89358 1.21917 0.94535 0.99664 1.02748 1.86132 1.64736 1.20735 1.54205 1.19568 0.93460 0.84463 0.95677 1.21516 1.01744 0.92721 1.00968 1.21204 0.93336 0.95956 0.95350 1.16050 1.01174 0.85215 1.02833 1.25622 0.92360 0.92421 0.92373 1.81242 1.10105 1.12787 1.09776 1.21224 0.98087 0.90079 0.96569 1.21475 0.96426 0.97807 1.00349 0.92589 0.94506 0.90045 0.90675 0.93472 0.90531 0.88955 0.93343 0.91544 0.91069 0.92717 0.84225 0.82065 0.82065 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.40 -13.70 10.18 -148.98 -1.52 -15.22 16 3 C 0.04 1.20 5.72 71.98 0.41 1.62 16 4 C 0.11 3.93 5.60 86.38 0.48 4.41 16 5 N -0.53 -24.72 2.49 -635.53 -1.59 -26.31 16 6 C -0.28 -15.02 9.09 84.04 0.76 -14.26 16 7 H 0.08 4.31 7.87 -2.91 -0.02 4.29 16 8 C -0.02 -1.22 4.90 84.93 0.42 -0.80 16 9 N -0.89 -50.46 9.13 21.66 0.20 -50.27 16 10 Si 0.97 45.45 29.59 68.60 2.03 47.48 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 14 C 0.55 26.98 4.04 87.66 0.35 27.33 16 15 O -0.57 -33.94 15.94 15.88 0.25 -33.69 16 16 C 0.10 3.86 2.37 29.85 0.07 3.93 16 17 H 0.09 2.77 6.65 -2.39 -0.02 2.75 16 18 C -0.13 -4.95 8.16 71.98 0.59 -4.36 16 19 O -0.34 -13.29 9.23 -71.87 -0.66 -13.95 16 20 C 0.11 3.15 5.56 22.62 0.13 3.28 16 21 C -0.15 -3.36 9.97 22.32 0.22 -3.14 16 22 C -0.04 -0.63 9.75 22.52 0.22 -0.41 16 23 C -0.05 -0.84 5.74 -21.30 -0.12 -0.96 16 24 C 0.29 5.57 15.32 88.34 1.35 6.92 16 25 N -0.46 -11.20 18.53 18.99 0.35 -10.85 16 26 C -0.04 -0.65 9.75 22.52 0.22 -0.43 16 27 C -0.14 -3.14 9.97 22.33 0.22 -2.91 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.97 8.14 -2.38 -0.02 1.96 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.37 4.54 -2.38 -0.01 1.36 16 33 H 0.08 2.59 8.03 -2.39 -0.02 2.57 16 34 H 0.09 2.60 8.03 -2.39 -0.02 2.58 16 35 H 0.26 14.43 8.32 -92.71 -0.77 13.66 16 36 H 0.07 2.70 6.54 -2.39 -0.02 2.69 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 2.46 7.07 -2.38 -0.02 2.44 16 39 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -74.93 363.34 6.68 -68.25 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.04 Total: 12.35 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.58 Total: 22.20 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.04 Total: -87.42 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -1.93 Total: -62.86 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.93 6.68 -68.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.815 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds