Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47100 * 2 1 4 4 C 1.34638 * 116.99890 * 179.97438 * 3 2 1 5 5 O 1.21507 * 120.00336 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00118 * 180.02562 * 4 3 2 7 7 C 1.39448 * 120.00005 * 185.55250 * 6 4 3 8 8 C 1.39147 * 119.92174 * 212.93612 * 7 6 4 9 9 C 1.37646 * 120.08469 * 179.72805 * 8 7 6 10 10 C 1.39819 * 119.91479 * 0.26936 * 9 8 7 11 11 C 1.47478 * 120.07840 * 179.97438 * 10 9 8 12 12 O 1.21613 * 120.00122 * 144.56448 * 11 10 9 13 13 N 1.34774 * 119.99588 * 324.56473 * 11 10 9 14 14 C 1.36900 * 119.99574 * 174.31640 * 13 11 10 15 15 H 1.07997 * 120.00135 * 18.68029 * 14 13 11 16 16 C 1.39031 * 120.00036 * 198.68128 * 14 13 11 17 17 N 1.31388 * 119.99721 * 13.16782 * 16 14 13 18 18 Si 1.86795 * 120.00131 * 193.16629 * 16 14 13 19 19 H 1.48498 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47042 * 120.00071 * 18 16 14 21 21 H 1.48501 * 109.47134 * 239.99982 * 18 16 14 22 22 C 1.46506 * 120.00425 * 354.31671 * 13 11 10 23 23 C 1.52995 * 117.49504 * 310.30686 * 22 13 11 24 24 C 1.52998 * 117.49474 * 241.64909 * 22 13 11 25 25 C 1.39822 * 119.84335 * 0.02562 * 10 9 8 26 26 C 1.37642 * 119.91830 * 359.97438 * 25 10 9 27 27 H 1.09005 * 109.46863 * 299.99549 * 1 2 3 28 28 H 1.09002 * 109.47041 * 59.99109 * 1 2 3 29 29 H 1.08994 * 109.47563 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46860 * 240.01008 * 2 1 3 31 31 H 1.08994 * 109.47190 * 120.00613 * 2 1 3 32 32 H 0.96994 * 119.99886 * 5.55470 * 6 4 3 33 33 H 1.08006 * 119.95584 * 359.97438 * 8 7 6 34 34 H 1.07997 * 120.04195 * 180.29732 * 9 8 7 35 35 H 0.97000 * 119.99782 * 184.96240 * 17 16 14 36 36 H 1.09000 * 115.54838 * 95.97870 * 22 13 11 37 37 H 1.08998 * 117.50375 * 0.02562 * 23 22 13 38 38 H 1.09004 * 117.49532 * 145.02229 * 23 22 13 39 39 H 1.09007 * 117.49755 * 214.97847 * 24 22 13 40 40 H 1.08996 * 117.50469 * 359.97438 * 24 22 13 41 41 H 1.07999 * 120.04146 * 180.02562 * 25 10 9 42 42 H 1.08001 * 119.96284 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8640 2.7908 0.0011 7 6 5.2413 2.9757 -0.1152 8 6 5.8548 4.0458 0.5288 9 6 7.2148 4.2282 0.4208 10 6 7.9792 3.3398 -0.3417 11 6 9.4365 3.5322 -0.4603 12 8 10.1747 2.5673 -0.5166 13 7 9.9503 4.7773 -0.5062 14 6 11.3072 4.9585 -0.4988 15 1 11.9627 4.1402 -0.7575 16 6 11.8414 6.1961 -0.1581 17 7 11.0798 7.1088 0.4016 18 14 13.6419 6.5612 -0.4960 19 1 14.2771 5.3767 -1.1273 20 1 13.7475 7.7264 -1.4104 21 1 14.3325 6.8705 0.7818 22 6 9.0567 5.9369 -0.5639 23 6 7.9416 5.9178 -1.6113 24 6 9.1497 6.8396 -1.7957 25 6 7.3584 2.2692 -0.9925 26 6 5.9980 2.0931 -0.8800 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2768 3.5585 0.0824 33 1 5.2636 4.7318 1.1173 34 1 7.6909 5.0562 0.9249 35 1 11.4325 7.9959 0.5734 36 1 8.8404 6.4118 0.3930 37 1 7.8725 5.0424 -2.2570 38 1 6.9917 6.3806 -1.3435 39 1 8.9941 7.9085 -1.6493 40 1 9.8758 6.5710 -2.5629 41 1 7.9458 1.5808 -1.5820 42 1 5.5178 1.2661 -1.3820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490867966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -38.870541 kcal Electronic energy + Delta-G solvation = -26408.198210 eV Core-core repulsion = 22548.333931 eV Total energy + Delta-G solvation = -3859.864279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98629 -39.61594 -38.24430 -36.63829 -36.05261 -34.81754 -33.09346 -32.00710 -31.21744 -30.59233 -29.39773 -25.38796 -24.19761 -22.97020 -22.53894 -21.80386 -21.46017 -20.92358 -19.26500 -19.03773 -17.57236 -17.04843 -16.97520 -16.46777 -16.10243 -15.17753 -15.01316 -14.64810 -14.26930 -14.03498 -13.98742 -13.86404 -13.31115 -13.16587 -12.96566 -12.90396 -12.65918 -12.38371 -12.17393 -11.95676 -11.85904 -11.20048 -11.15123 -10.93570 -10.81807 -10.76850 -10.62688 -10.42960 -10.33294 -10.20728 -9.87289 -9.44407 -8.88044 -8.56551 -8.46819 -7.85129 -7.75327 -6.34198 -3.87839 1.29914 1.78218 1.91069 2.63255 3.14586 3.25166 3.31905 3.72985 3.92071 4.08765 4.39246 4.60781 4.64219 4.69122 4.75231 4.95514 5.09226 5.15041 5.22214 5.28191 5.42033 5.51575 5.57092 5.65205 5.75425 5.77320 5.80947 5.97558 6.08249 6.17336 6.30044 6.37306 6.46965 6.50548 6.67729 6.73546 6.91657 6.95693 7.17445 7.21114 7.26631 7.53166 8.06336 8.10810 8.45372 9.14168 9.37146 9.93771 10.67802 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035440 B = 0.002772 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.879374 B =10097.032684 C =10536.075602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.371 6.371 4 C 0.646 3.354 5 O -0.551 6.551 6 N -0.646 5.646 7 C 0.151 3.849 8 C -0.149 4.149 9 C -0.064 4.064 10 C -0.098 4.098 11 C 0.483 3.517 12 O -0.585 6.585 13 N -0.411 5.411 14 C -0.304 4.304 15 H 0.103 0.897 16 C 0.037 3.963 17 N -0.867 5.867 18 Si 0.921 3.079 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.134 3.866 23 C -0.212 4.212 24 C -0.158 4.158 25 C -0.062 4.062 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.415 0.585 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.267 0.733 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 -3.274 -1.176 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.399 3.601 5 O -0.438 6.438 6 N -0.297 5.297 7 C 0.058 3.942 8 C -0.169 4.169 9 C -0.083 4.083 10 C -0.103 4.103 11 C 0.273 3.727 12 O -0.471 6.471 13 N -0.128 5.128 14 C -0.432 4.432 15 H 0.121 0.879 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.748 3.252 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.208 1.208 22 C 0.029 3.971 23 C -0.250 4.250 24 C -0.195 4.195 25 C -0.082 4.082 26 C -0.149 4.149 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.251 0.749 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.148 0.852 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.349 -4.112 -1.085 19.811 hybrid contribution 0.512 0.766 -0.084 0.925 sum -18.837 -3.346 -1.169 19.168 Atomic orbital electron populations 1.21836 0.92452 1.03154 1.03565 1.23001 0.94826 0.78415 1.03087 1.86225 1.21774 1.33624 1.86914 1.18063 0.81273 0.84240 0.76474 1.91051 1.59438 1.39457 1.53812 1.41832 1.06658 1.06140 1.75043 1.17490 0.80394 0.97926 0.98400 1.20654 0.95028 0.99349 1.01856 1.21386 0.92340 0.97925 0.96694 1.20269 0.94867 0.95877 0.99239 1.17820 0.86627 0.83587 0.84646 1.90625 1.60668 1.39555 1.56242 1.43087 1.05846 1.02665 1.61153 1.19737 0.80788 0.98822 1.43823 0.87884 1.25232 0.99869 0.96259 0.95355 1.69920 1.37278 1.04773 1.38585 0.85939 0.82579 0.78565 0.78142 1.19218 1.20637 1.20752 1.21240 0.91928 0.90042 0.93927 1.23556 0.93782 1.02631 1.04987 1.22905 0.98697 0.96351 1.01590 1.21056 0.93264 0.96181 0.97679 1.20940 0.93947 1.00313 0.99691 0.91433 0.91426 0.89896 0.90942 0.90943 0.74882 0.85642 0.84309 0.92234 0.86459 0.89670 0.89230 0.89624 0.89605 0.85217 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.42 16 2 C 0.08 0.67 6.19 37.16 0.23 0.90 16 3 O -0.37 -3.94 10.27 -40.32 -0.41 -4.36 16 4 C 0.65 8.48 8.47 54.06 0.46 8.94 16 5 O -0.55 -9.02 13.80 -19.28 -0.27 -9.28 16 6 N -0.65 -7.56 5.33 -14.26 -0.08 -7.63 16 7 C 0.15 2.18 6.28 -83.72 -0.53 1.65 16 8 C -0.15 -2.09 9.94 -39.46 -0.39 -2.48 16 9 C -0.06 -1.10 6.93 -39.21 -0.27 -1.37 16 10 C -0.10 -2.00 4.15 -104.95 -0.44 -2.43 16 11 C 0.48 12.13 7.13 -12.50 -0.09 12.04 16 12 O -0.59 -16.77 16.48 5.27 0.09 -16.68 16 13 N -0.41 -10.34 2.93 -108.92 -0.32 -10.66 16 14 C -0.30 -8.31 9.25 -14.99 -0.14 -8.45 16 15 H 0.10 2.99 7.31 -52.49 -0.38 2.61 16 16 C 0.04 0.95 5.02 -17.45 -0.09 0.87 16 17 N -0.87 -21.84 10.44 55.50 0.58 -21.26 16 18 Si 0.92 20.36 29.58 -169.99 -5.03 15.33 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.13 2.86 1.99 -67.93 -0.14 2.72 16 23 C -0.21 -3.75 7.51 -26.70 -0.20 -3.95 16 24 C -0.16 -3.12 9.35 -26.70 -0.25 -3.37 16 25 C -0.06 -1.15 9.60 -39.21 -0.38 -1.53 16 26 C -0.13 -2.12 8.63 -39.46 -0.34 -2.46 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.41 3.43 8.92 -40.82 -0.36 3.07 16 33 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.14 2.44 5.62 -52.49 -0.29 2.14 16 35 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 36 H 0.12 2.58 6.61 -51.93 -0.34 2.23 16 37 H 0.08 1.59 7.37 -51.93 -0.38 1.20 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 41 H 0.13 2.43 8.00 -52.49 -0.42 2.01 16 42 H 0.13 2.13 6.39 -52.49 -0.34 1.80 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -32.28 352.59 -7.76 -40.03 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.46 Total: 8.54 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.17 Total: 0.66 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.18 Total: -39.56 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.59 Total: -30.32 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.28 -7.76 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490867966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.164 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds