Wall clock time and date at job start Tue Mar 31 2020 13:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47100 * 2 1 4 4 C 1.34638 * 116.99890 * 179.97438 * 3 2 1 5 5 O 1.21507 * 120.00336 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00118 * 180.02562 * 4 3 2 7 7 C 1.39448 * 120.00005 * 185.55250 * 6 4 3 8 8 C 1.39147 * 119.92174 * 212.93612 * 7 6 4 9 9 C 1.37646 * 120.08469 * 179.72805 * 8 7 6 10 10 C 1.39819 * 119.91479 * 0.26936 * 9 8 7 11 11 C 1.47478 * 120.07840 * 179.97438 * 10 9 8 12 12 O 1.21613 * 120.00122 * 144.56448 * 11 10 9 13 13 N 1.34774 * 119.99588 * 324.56473 * 11 10 9 14 14 C 1.36900 * 119.99574 * 174.31640 * 13 11 10 15 15 H 1.07997 * 120.00135 * 18.68029 * 14 13 11 16 16 C 1.39031 * 120.00036 * 198.68128 * 14 13 11 17 17 N 1.31388 * 119.99721 * 13.16782 * 16 14 13 18 18 Si 1.86795 * 120.00131 * 193.16629 * 16 14 13 19 19 H 1.48498 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47042 * 120.00071 * 18 16 14 21 21 H 1.48501 * 109.47134 * 239.99982 * 18 16 14 22 22 C 1.46506 * 120.00425 * 354.31671 * 13 11 10 23 23 C 1.52995 * 117.49504 * 310.30686 * 22 13 11 24 24 C 1.52998 * 117.49474 * 241.64909 * 22 13 11 25 25 C 1.39822 * 119.84335 * 0.02562 * 10 9 8 26 26 C 1.37642 * 119.91830 * 359.97438 * 25 10 9 27 27 H 1.09005 * 109.46863 * 299.99549 * 1 2 3 28 28 H 1.09002 * 109.47041 * 59.99109 * 1 2 3 29 29 H 1.08994 * 109.47563 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46860 * 240.01008 * 2 1 3 31 31 H 1.08994 * 109.47190 * 120.00613 * 2 1 3 32 32 H 0.96994 * 119.99886 * 5.55470 * 6 4 3 33 33 H 1.08006 * 119.95584 * 359.97438 * 8 7 6 34 34 H 1.07997 * 120.04195 * 180.29732 * 9 8 7 35 35 H 0.97000 * 119.99782 * 184.96240 * 17 16 14 36 36 H 1.09000 * 115.54838 * 95.97870 * 22 13 11 37 37 H 1.08998 * 117.50375 * 0.02562 * 23 22 13 38 38 H 1.09004 * 117.49532 * 145.02229 * 23 22 13 39 39 H 1.09007 * 117.49755 * 214.97847 * 24 22 13 40 40 H 1.08996 * 117.50469 * 359.97438 * 24 22 13 41 41 H 1.07999 * 120.04146 * 180.02562 * 25 10 9 42 42 H 1.08001 * 119.96284 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8640 2.7908 0.0011 7 6 5.2413 2.9757 -0.1152 8 6 5.8548 4.0458 0.5288 9 6 7.2148 4.2282 0.4208 10 6 7.9792 3.3398 -0.3417 11 6 9.4365 3.5322 -0.4603 12 8 10.1747 2.5673 -0.5166 13 7 9.9503 4.7773 -0.5062 14 6 11.3072 4.9585 -0.4988 15 1 11.9627 4.1402 -0.7575 16 6 11.8414 6.1961 -0.1581 17 7 11.0798 7.1088 0.4016 18 14 13.6419 6.5612 -0.4960 19 1 14.2771 5.3767 -1.1273 20 1 13.7475 7.7264 -1.4104 21 1 14.3325 6.8705 0.7818 22 6 9.0567 5.9369 -0.5639 23 6 7.9416 5.9178 -1.6113 24 6 9.1497 6.8396 -1.7957 25 6 7.3584 2.2692 -0.9925 26 6 5.9980 2.0931 -0.8800 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2768 3.5585 0.0824 33 1 5.2636 4.7318 1.1173 34 1 7.6909 5.0562 0.9249 35 1 11.4325 7.9959 0.5734 36 1 8.8404 6.4118 0.3930 37 1 7.8725 5.0424 -2.2570 38 1 6.9917 6.3806 -1.3435 39 1 8.9941 7.9085 -1.6493 40 1 9.8758 6.5710 -2.5629 41 1 7.9458 1.5808 -1.5820 42 1 5.5178 1.2661 -1.3820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490867966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:17 Heat of formation + Delta-G solvation = -59.828114 kcal Electronic energy + Delta-G solvation = -26409.106998 eV Core-core repulsion = 22548.333931 eV Total energy + Delta-G solvation = -3860.773067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.06096 -41.15942 -39.58311 -37.90989 -37.69367 -36.03010 -34.93927 -33.11824 -32.61693 -31.96140 -30.73928 -27.19707 -25.36527 -23.99293 -23.93671 -23.20263 -22.92303 -22.18536 -20.92474 -20.05697 -19.04458 -18.56524 -18.14836 -17.73250 -17.25606 -17.05106 -16.53597 -15.93837 -15.76733 -15.57484 -15.20745 -14.93383 -14.80310 -14.58211 -14.35291 -14.10231 -13.74545 -13.65367 -13.50780 -12.98831 -12.93352 -12.89797 -12.53377 -12.47810 -12.28154 -12.21996 -12.12100 -11.83571 -11.74981 -11.53076 -11.39754 -11.05264 -10.68119 -10.34954 -9.88544 -9.73235 -9.12512 -8.29766 -5.93142 -0.05788 0.46524 0.96424 1.35303 1.41575 1.53647 1.55515 2.07984 2.26668 2.84064 2.94021 3.04432 3.14381 3.24049 3.88754 3.90511 4.01902 4.04157 4.09934 4.23497 4.33419 4.37869 4.41483 4.43731 4.52511 4.59310 4.75718 4.86799 4.95474 5.04199 5.11620 5.13311 5.15890 5.22637 5.33882 5.40968 5.44150 5.45919 5.51433 5.59030 5.94638 6.07759 6.22826 6.51943 7.13695 7.15960 7.44513 8.01583 8.69701 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.035440 B = 0.002772 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.879374 B =10097.032684 C =10536.075602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 O -0.362 6.362 4 C 0.647 3.353 5 O -0.587 6.587 6 N -0.630 5.630 7 C 0.170 3.830 8 C -0.125 4.125 9 C -0.060 4.060 10 C -0.124 4.124 11 C 0.469 3.531 12 O -0.642 6.642 13 N -0.419 5.419 14 C -0.348 4.348 15 H 0.066 0.934 16 C 0.015 3.985 17 N -0.869 5.869 18 Si 0.978 3.022 19 H -0.281 1.281 20 H -0.263 1.263 21 H -0.274 1.274 22 C 0.112 3.888 23 C -0.170 4.170 24 C -0.162 4.162 25 C -0.071 4.071 26 C -0.130 4.130 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.436 0.564 33 H 0.174 0.826 34 H 0.138 0.862 35 H 0.275 0.725 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 -1.288 -0.558 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.003 4.003 3 O -0.276 6.276 4 C 0.401 3.599 5 O -0.476 6.476 6 N -0.283 5.283 7 C 0.076 3.924 8 C -0.145 4.145 9 C -0.079 4.079 10 C -0.127 4.127 11 C 0.260 3.740 12 O -0.532 6.532 13 N -0.134 5.134 14 C -0.475 4.475 15 H 0.084 0.916 16 C -0.189 4.189 17 N -0.506 5.506 18 Si 0.802 3.198 19 H -0.206 1.206 20 H -0.188 1.188 21 H -0.199 1.199 22 C 0.008 3.992 23 C -0.208 4.208 24 C -0.199 4.199 25 C -0.091 4.091 26 C -0.150 4.150 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.276 0.724 33 H 0.192 0.808 34 H 0.155 0.845 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.955 -2.058 -0.462 23.052 hybrid contribution 1.464 0.085 -0.240 1.486 sum -21.491 -1.973 -0.702 21.593 Atomic orbital electron populations 1.21852 0.89833 1.04600 1.03931 1.23325 0.96779 0.77295 1.02872 1.86261 1.19963 1.35045 1.86311 1.18218 0.81880 0.84032 0.75771 1.91046 1.60493 1.40759 1.55324 1.41656 1.05728 1.06708 1.74218 1.17504 0.81561 0.96871 0.96509 1.20957 0.93683 0.99259 1.00632 1.21360 0.93517 0.97114 0.95959 1.19910 0.92180 0.98227 1.02432 1.18678 0.88736 0.82995 0.83564 1.90555 1.62714 1.41241 1.58714 1.43246 1.05693 1.03913 1.60560 1.19561 0.82115 0.98927 1.46938 0.91554 1.25820 1.03249 0.95433 0.94440 1.69956 1.38349 1.04928 1.37339 0.85116 0.78199 0.78166 0.78309 1.20634 1.18820 1.19943 1.21278 0.93688 0.89613 0.94593 1.23552 0.94263 1.01241 1.01750 1.22902 0.99603 0.97423 1.00009 1.20928 0.94271 0.95770 0.98121 1.20918 0.92947 1.00922 1.00246 0.91012 0.91045 0.87915 0.91217 0.91275 0.72353 0.80826 0.84477 0.91441 0.86854 0.90717 0.85036 0.87818 0.92001 0.86980 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 71.98 0.74 -0.38 16 2 C 0.07 1.04 6.19 71.98 0.45 1.49 16 3 O -0.36 -6.69 10.27 -55.48 -0.57 -7.26 16 4 C 0.65 15.30 8.47 129.79 1.10 16.40 16 5 O -0.59 -18.43 13.80 19.82 0.27 -18.15 16 6 N -0.63 -12.29 5.33 -429.42 -2.29 -14.57 16 7 C 0.17 4.36 6.28 38.37 0.24 4.60 16 8 C -0.13 -2.99 9.94 22.35 0.22 -2.77 16 9 C -0.06 -1.96 6.93 22.51 0.16 -1.81 16 10 C -0.12 -5.12 4.15 -20.08 -0.08 -5.20 16 11 C 0.47 24.97 7.13 86.68 0.62 25.59 16 12 O -0.64 -39.93 16.48 -4.07 -0.07 -40.00 16 13 N -0.42 -22.06 2.93 -616.76 -1.81 -23.87 16 14 C -0.35 -20.09 9.25 84.09 0.78 -19.31 16 15 H 0.07 4.21 7.31 -2.91 -0.02 4.19 16 16 C 0.02 0.79 5.02 84.95 0.43 1.21 16 17 N -0.87 -43.50 10.44 21.68 0.23 -43.27 16 18 Si 0.98 42.39 29.58 68.60 2.03 44.42 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 C 0.11 4.78 1.99 44.99 0.09 4.87 16 23 C -0.17 -5.71 7.51 30.62 0.23 -5.48 16 24 C -0.16 -6.27 9.35 30.62 0.29 -5.98 16 25 C -0.07 -2.72 9.60 22.51 0.22 -2.51 16 26 C -0.13 -4.15 8.63 22.35 0.19 -3.96 16 27 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.44 4.97 8.92 -92.71 -0.83 4.15 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.14 4.57 5.62 -2.91 -0.02 4.56 16 35 H 0.28 12.81 8.32 -92.71 -0.77 12.04 16 36 H 0.11 4.89 6.61 -2.39 -0.02 4.87 16 37 H 0.07 2.72 7.37 -2.39 -0.02 2.70 16 38 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 40 H 0.06 2.68 8.14 -2.39 -0.02 2.67 16 41 H 0.11 4.57 8.00 -2.91 -0.02 4.54 16 42 H 0.13 4.22 6.39 -2.91 -0.02 4.20 16 Total: -1.00 -75.60 352.59 3.69 -71.91 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.23 Total: 24.04 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.66 Total: 6.76 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -3.87 Total: -81.71 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -0.36 Total: -65.42 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.60 3.69 -71.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490867966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.083 kcal (2) G-P(sol) polarization free energy of solvation -75.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds