Wall clock time and date at job start Tue Mar 31 2020 13:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47142 * 90.99090 * 3 2 1 5 5 C 1.36976 * 119.99804 * 264.68342 * 4 3 2 6 6 H 1.07993 * 120.00431 * 198.79075 * 5 4 3 7 7 C 1.38980 * 120.00018 * 18.79961 * 5 4 3 8 8 N 1.31416 * 120.00317 * 22.47094 * 7 5 4 9 9 Si 1.86802 * 120.00140 * 202.48018 * 7 5 4 10 10 H 1.48498 * 109.46870 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47164 * 119.99440 * 9 7 5 12 12 H 1.48498 * 109.47226 * 239.99390 * 9 7 5 13 13 C 1.34776 * 120.00354 * 84.68879 * 4 3 2 14 14 O 1.21636 * 119.99891 * 179.97438 * 13 4 3 15 15 C 1.47324 * 119.99571 * 359.97438 * 13 4 3 16 16 C 1.38310 * 126.46045 * 270.02355 * 15 13 4 17 17 C 1.50696 * 125.80234 * 359.96533 * 16 15 13 18 18 N 1.34257 * 108.39894 * 180.23304 * 16 15 13 19 19 H 0.97000 * 125.39314 * 179.77636 * 18 16 15 20 20 C 1.37832 * 109.21347 * 359.63002 * 18 16 15 21 21 C 1.46645 * 125.85155 * 180.12038 * 20 18 16 22 22 O 1.21602 * 119.99824 * 180.30068 * 21 20 18 23 23 O 1.34868 * 119.99389 * 0.29568 * 21 20 18 24 24 C 1.45209 * 116.99587 * 180.02562 * 23 21 20 25 25 C 1.52997 * 109.47029 * 179.97438 * 24 23 21 26 26 C 1.36438 * 108.29971 * 0.37139 * 20 18 16 27 27 C 1.50704 * 126.49921 * 179.79974 * 26 20 18 28 28 H 4.40640 * 5.51429 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47284 * 330.98718 * 3 2 1 30 30 H 1.09000 * 109.46924 * 210.98708 * 3 2 1 31 31 H 0.96993 * 120.00162 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47100 * 89.99767 * 17 16 15 33 33 H 1.09007 * 109.47110 * 330.00416 * 17 16 15 34 34 H 1.09000 * 109.47503 * 210.00384 * 17 16 15 35 35 H 1.09006 * 109.46739 * 300.00203 * 24 23 21 36 36 H 1.08999 * 109.47106 * 59.99490 * 24 23 21 37 37 H 1.09005 * 109.47173 * 179.97438 * 25 24 23 38 38 H 1.08991 * 109.47364 * 300.00090 * 25 24 23 39 39 H 1.09005 * 109.47115 * 60.00591 * 25 24 23 40 40 H 1.09002 * 109.47161 * 269.98100 * 27 26 20 41 41 H 1.09004 * 109.46849 * 29.97550 * 27 26 20 42 42 H 1.08996 * 109.47163 * 149.97684 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0248 -1.3810 5 6 3.4667 -1.1455 -2.0104 6 1 4.0973 -1.1271 -2.8869 7 6 2.9924 -2.3568 -1.5210 8 7 1.9139 -2.3853 -0.7706 9 14 3.8879 -3.9444 -1.9297 10 1 5.0642 -3.6431 -2.7846 11 1 4.3416 -4.5942 -0.6739 12 1 2.9696 -4.8579 -2.6559 13 6 3.2566 1.1984 -2.0322 14 8 3.6625 1.2184 -3.1787 15 6 2.8986 2.4570 -1.3554 16 6 1.6547 3.0617 -1.3487 17 6 0.4191 2.5441 -2.0389 18 7 1.7365 4.1914 -0.6278 19 1 1.0060 4.8087 -0.4659 20 6 3.0221 4.3333 -0.1514 21 6 3.5129 5.4369 0.6802 22 8 4.6749 5.4584 1.0380 23 8 2.6754 6.4280 1.0481 24 6 3.2300 7.4881 1.8710 25 6 2.1391 8.5139 2.1846 26 6 3.7612 3.2740 -0.5908 27 6 5.2209 3.0227 -0.3130 28 1 -1.0500 0.0002 0.0000 29 1 3.0098 -0.8979 0.4984 30 1 3.0089 0.8818 0.5291 31 1 1.5831 -3.2306 -0.4288 32 1 -0.1304 1.8923 -1.3597 33 1 0.7076 1.9823 -2.9274 34 1 -0.2135 3.3829 -2.3290 35 1 3.6099 7.0651 2.8011 36 1 4.0439 7.9762 1.3348 37 1 2.5553 9.3095 2.8027 38 1 1.7597 8.9367 1.2545 39 1 1.3250 8.0261 2.7208 40 1 5.8245 3.4883 -1.0921 41 1 5.4852 3.4490 0.6548 42 1 5.4088 1.9491 -0.3006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491019890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:55 Heat of formation + Delta-G solvation = -14.814739 kcal Electronic energy + Delta-G solvation = -27131.788468 eV Core-core repulsion = 23272.967327 eV Total energy + Delta-G solvation = -3858.821141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43332 -39.90531 -38.10822 -36.59919 -35.01935 -32.71365 -32.31804 -31.97085 -31.15313 -30.91418 -27.77089 -26.69589 -26.33816 -24.91901 -23.54370 -22.06563 -21.26932 -19.40298 -18.62300 -18.04124 -17.77288 -16.77743 -16.66559 -16.48574 -15.71012 -15.18033 -14.77690 -14.45021 -14.14447 -13.96523 -13.82256 -13.50290 -13.20108 -12.95491 -12.79081 -12.53976 -12.51029 -12.20547 -12.11006 -12.07597 -11.89115 -11.84221 -11.81968 -11.56381 -11.20361 -10.99918 -10.69618 -10.45168 -10.33136 -10.29731 -9.32205 -9.21773 -8.85694 -8.59318 -8.31150 -7.83082 -7.78218 -6.31212 -3.82654 1.38070 2.54460 2.70656 3.15153 3.21951 3.25279 3.28766 3.36092 3.73158 3.93051 4.10948 4.22444 4.67965 4.68263 4.81679 5.02249 5.03893 5.07155 5.10276 5.27341 5.44311 5.49166 5.49836 5.59845 5.66763 5.72239 5.91379 5.97522 6.15169 6.16888 6.25077 6.31329 6.40470 6.47867 6.60483 6.77325 6.94694 7.04565 7.14790 7.55961 7.59202 7.81496 8.12042 8.47400 8.84877 9.16982 9.39969 9.98821 10.69358 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.003721 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.432564 B = 7522.674653 C = 7923.721198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.095 4.095 3 C 0.234 3.766 4 N -0.429 5.429 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.034 3.966 8 N -0.858 5.858 9 Si 0.917 3.083 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.523 3.477 14 O -0.578 6.578 15 C -0.191 4.191 16 C 0.114 3.886 17 C -0.099 4.099 18 N -0.524 5.524 19 H 0.420 0.580 20 C -0.068 4.068 21 C 0.541 3.459 22 O -0.502 6.502 23 O -0.367 6.367 24 C 0.065 3.935 25 C -0.152 4.152 26 C -0.023 4.023 27 C -0.095 4.095 28 H 0.197 0.803 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 15.163 7.272 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.097 4.097 3 C 0.110 3.890 4 N -0.146 5.146 5 C -0.443 4.443 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.495 5.495 9 Si 0.744 3.256 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.210 1.210 13 C 0.311 3.689 14 O -0.462 6.462 15 C -0.200 4.200 16 C -0.008 4.008 17 C -0.156 4.156 18 N -0.120 5.120 19 H 0.257 0.743 20 C -0.176 4.176 21 C 0.387 3.613 22 O -0.391 6.391 23 O -0.285 6.285 24 C -0.009 4.009 25 C -0.209 4.209 26 C -0.032 4.032 27 C -0.152 4.152 28 H 0.214 0.786 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.206 15.179 6.992 17.016 hybrid contribution -0.382 -0.543 0.106 0.672 sum -3.588 14.636 7.098 16.657 Atomic orbital electron populations 1.24084 0.95199 1.07192 1.02650 1.23106 0.94225 0.94572 0.97762 1.18184 0.84426 1.01248 0.85092 1.43605 1.55450 1.05308 1.10270 1.19682 1.29084 0.81911 1.13605 0.87744 1.25279 0.94993 0.99381 0.97469 1.70103 1.17921 1.26980 1.34489 0.86012 0.79861 0.81453 0.78277 1.19150 1.20654 1.20978 1.17073 0.84080 0.82236 0.85526 1.90623 1.50957 1.86762 1.17835 1.19656 0.92633 1.00105 1.07605 1.20789 0.96723 0.87125 0.96170 1.20661 0.92442 1.01151 1.01379 1.41395 1.10059 1.20179 1.40369 0.74268 1.18422 0.86280 1.00124 1.12734 1.19794 0.83794 0.80189 0.77489 1.90852 1.17757 1.76548 1.53927 1.86550 1.43499 1.33384 1.65076 1.22984 0.97076 0.86587 0.94235 1.21809 0.98823 0.97706 1.02603 1.19722 0.96087 0.91710 0.95645 1.20440 0.89644 1.02541 1.02559 0.78585 0.87849 0.91852 0.92246 0.88938 0.89161 0.91690 0.91121 0.91174 0.90230 0.91549 0.91507 0.90999 0.90261 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.32 17.01 29.55 0.50 -4.82 16 2 C -0.09 -2.06 10.83 -37.12 -0.40 -2.46 16 3 C 0.23 5.24 4.91 -6.83 -0.03 5.21 16 4 N -0.43 -10.77 2.59 -119.19 -0.31 -11.07 16 5 C -0.32 -8.55 9.29 -14.98 -0.14 -8.69 16 6 H 0.10 2.99 7.41 -52.49 -0.39 2.61 16 7 C 0.03 0.86 4.82 -17.45 -0.08 0.77 16 8 N -0.86 -22.00 9.56 55.50 0.53 -21.47 16 9 Si 0.92 20.19 29.61 -169.99 -5.03 15.16 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.52 12.98 6.75 -12.57 -0.08 12.89 16 14 O -0.58 -16.42 16.76 5.25 0.09 -16.34 16 15 C -0.19 -3.92 4.07 -105.02 -0.43 -4.35 16 16 C 0.11 1.94 7.10 -81.51 -0.58 1.37 16 17 C -0.10 -1.51 10.10 36.00 0.36 -1.15 16 18 N -0.52 -7.52 6.01 -5.61 -0.03 -7.56 16 19 H 0.42 4.52 8.96 -40.82 -0.37 4.16 16 20 C -0.07 -1.11 7.02 -82.42 -0.58 -1.69 16 21 C 0.54 8.23 7.93 34.12 0.27 8.50 16 22 O -0.50 -8.47 14.49 -19.34 -0.28 -8.75 16 23 O -0.37 -4.57 10.23 -40.95 -0.42 -4.99 16 24 C 0.06 0.62 6.20 37.16 0.23 0.85 16 25 C -0.15 -0.99 10.29 37.16 0.38 -0.61 16 26 C -0.02 -0.43 5.93 -104.11 -0.62 -1.04 16 27 C -0.09 -1.66 9.63 36.01 0.35 -1.31 16 28 H 0.20 3.09 7.80 -54.09 -0.42 2.67 16 29 H 0.10 2.42 6.61 -51.93 -0.34 2.08 16 30 H 0.06 1.30 6.87 -51.93 -0.36 0.94 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.09 1.42 5.43 -51.93 -0.28 1.14 16 33 H 0.09 1.61 7.93 -51.93 -0.41 1.20 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.31 6.41 -51.93 -0.33 0.97 16 42 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -32.47 363.23 -6.25 -38.72 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.41 Total: 7.34 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.85 Total: 3.47 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.19 Total: -40.10 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.61 Total: -30.07 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.47 -6.25 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491019890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.906 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds