Wall clock time and date at job start Tue Mar 31 2020 13:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47142 * 90.99090 * 3 2 1 5 5 C 1.36976 * 119.99804 * 264.68342 * 4 3 2 6 6 H 1.07993 * 120.00431 * 198.79075 * 5 4 3 7 7 C 1.38980 * 120.00018 * 18.79961 * 5 4 3 8 8 N 1.31416 * 120.00317 * 22.47094 * 7 5 4 9 9 Si 1.86802 * 120.00140 * 202.48018 * 7 5 4 10 10 H 1.48498 * 109.46870 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47164 * 119.99440 * 9 7 5 12 12 H 1.48498 * 109.47226 * 239.99390 * 9 7 5 13 13 C 1.34776 * 120.00354 * 84.68879 * 4 3 2 14 14 O 1.21636 * 119.99891 * 179.97438 * 13 4 3 15 15 C 1.47324 * 119.99571 * 359.97438 * 13 4 3 16 16 C 1.38310 * 126.46045 * 270.02355 * 15 13 4 17 17 C 1.50696 * 125.80234 * 359.96533 * 16 15 13 18 18 N 1.34257 * 108.39894 * 180.23304 * 16 15 13 19 19 H 0.97000 * 125.39314 * 179.77636 * 18 16 15 20 20 C 1.37832 * 109.21347 * 359.63002 * 18 16 15 21 21 C 1.46645 * 125.85155 * 180.12038 * 20 18 16 22 22 O 1.21602 * 119.99824 * 180.30068 * 21 20 18 23 23 O 1.34868 * 119.99389 * 0.29568 * 21 20 18 24 24 C 1.45209 * 116.99587 * 180.02562 * 23 21 20 25 25 C 1.52997 * 109.47029 * 179.97438 * 24 23 21 26 26 C 1.36438 * 108.29971 * 0.37139 * 20 18 16 27 27 C 1.50704 * 126.49921 * 179.79974 * 26 20 18 28 28 H 4.40640 * 5.51429 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47284 * 330.98718 * 3 2 1 30 30 H 1.09000 * 109.46924 * 210.98708 * 3 2 1 31 31 H 0.96993 * 120.00162 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47100 * 89.99767 * 17 16 15 33 33 H 1.09007 * 109.47110 * 330.00416 * 17 16 15 34 34 H 1.09000 * 109.47503 * 210.00384 * 17 16 15 35 35 H 1.09006 * 109.46739 * 300.00203 * 24 23 21 36 36 H 1.08999 * 109.47106 * 59.99490 * 24 23 21 37 37 H 1.09005 * 109.47173 * 179.97438 * 25 24 23 38 38 H 1.08991 * 109.47364 * 300.00090 * 25 24 23 39 39 H 1.09005 * 109.47115 * 60.00591 * 25 24 23 40 40 H 1.09002 * 109.47161 * 269.98100 * 27 26 20 41 41 H 1.09004 * 109.46849 * 29.97550 * 27 26 20 42 42 H 1.08996 * 109.47163 * 149.97684 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0248 -1.3810 5 6 3.4667 -1.1455 -2.0104 6 1 4.0973 -1.1271 -2.8869 7 6 2.9924 -2.3568 -1.5210 8 7 1.9139 -2.3853 -0.7706 9 14 3.8879 -3.9444 -1.9297 10 1 5.0642 -3.6431 -2.7846 11 1 4.3416 -4.5942 -0.6739 12 1 2.9696 -4.8579 -2.6559 13 6 3.2566 1.1984 -2.0322 14 8 3.6625 1.2184 -3.1787 15 6 2.8986 2.4570 -1.3554 16 6 1.6547 3.0617 -1.3487 17 6 0.4191 2.5441 -2.0389 18 7 1.7365 4.1914 -0.6278 19 1 1.0060 4.8087 -0.4659 20 6 3.0221 4.3333 -0.1514 21 6 3.5129 5.4369 0.6802 22 8 4.6749 5.4584 1.0380 23 8 2.6754 6.4280 1.0481 24 6 3.2300 7.4881 1.8710 25 6 2.1391 8.5139 2.1846 26 6 3.7612 3.2740 -0.5908 27 6 5.2209 3.0227 -0.3130 28 1 -1.0500 0.0002 0.0000 29 1 3.0098 -0.8979 0.4984 30 1 3.0089 0.8818 0.5291 31 1 1.5831 -3.2306 -0.4288 32 1 -0.1304 1.8923 -1.3597 33 1 0.7076 1.9823 -2.9274 34 1 -0.2135 3.3829 -2.3290 35 1 3.6099 7.0651 2.8011 36 1 4.0439 7.9762 1.3348 37 1 2.5553 9.3095 2.8027 38 1 1.7597 8.9367 1.2545 39 1 1.3250 8.0261 2.7208 40 1 5.8245 3.4883 -1.0921 41 1 5.4852 3.4490 0.6548 42 1 5.4088 1.9491 -0.3006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491019890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:54 Heat of formation + Delta-G solvation = -34.099505 kcal Electronic energy + Delta-G solvation = -27132.624718 eV Core-core repulsion = 23272.967327 eV Total energy + Delta-G solvation = -3859.657391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.78090 -41.08957 -39.94238 -37.70741 -36.96505 -34.15815 -33.99068 -32.96181 -32.92345 -32.13308 -29.22962 -28.18341 -27.87413 -26.75308 -24.56697 -23.36562 -22.59310 -20.73531 -20.05166 -19.63258 -19.44866 -18.27135 -17.87738 -17.71035 -17.49584 -16.54854 -16.28761 -16.10215 -15.75647 -15.49624 -14.92345 -14.73588 -14.47049 -14.34347 -14.14823 -13.97640 -13.91952 -13.68395 -13.54858 -13.50134 -13.27238 -13.18093 -12.91433 -12.77933 -12.59004 -12.52445 -12.42962 -12.12970 -11.59911 -11.53929 -11.14137 -11.00306 -10.60486 -10.41197 -9.81871 -9.74166 -9.20029 -8.29114 -5.88965 0.10147 1.26384 1.36118 1.45602 1.46708 1.58908 1.89994 1.95876 2.02852 2.21081 2.38890 2.47999 3.07541 3.33226 3.71609 3.79034 3.93002 4.03139 4.03526 4.09038 4.10430 4.35618 4.38703 4.47014 4.66819 4.70117 4.72556 4.73802 4.85620 4.94058 4.94217 4.97921 5.07278 5.09256 5.19942 5.37493 5.48876 5.50809 5.52695 5.74369 6.11865 6.41313 6.49556 6.64997 7.17581 7.23927 7.44995 8.05466 8.69261 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.003721 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.432564 B = 7522.674653 C = 7923.721198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.143 4.143 3 C 0.242 3.758 4 N -0.434 5.434 5 C -0.355 4.355 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.863 5.863 9 Si 0.980 3.020 10 H -0.276 1.276 11 H -0.266 1.266 12 H -0.278 1.278 13 C 0.520 3.480 14 O -0.631 6.631 15 C -0.228 4.228 16 C 0.125 3.875 17 C -0.095 4.095 18 N -0.496 5.496 19 H 0.441 0.559 20 C -0.057 4.057 21 C 0.547 3.453 22 O -0.520 6.520 23 O -0.359 6.359 24 C 0.055 3.945 25 C -0.145 4.145 26 C -0.046 4.046 27 C -0.088 4.088 28 H 0.236 0.764 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.272 0.728 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 16.591 8.906 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.145 4.145 3 C 0.120 3.880 4 N -0.150 5.150 5 C -0.482 4.482 6 H 0.092 0.908 7 C -0.195 4.195 8 N -0.499 5.499 9 Si 0.804 3.196 10 H -0.201 1.201 11 H -0.191 1.191 12 H -0.204 1.204 13 C 0.310 3.690 14 O -0.519 6.519 15 C -0.237 4.237 16 C 0.002 3.998 17 C -0.152 4.152 18 N -0.094 5.094 19 H 0.283 0.717 20 C -0.166 4.166 21 C 0.394 3.606 22 O -0.410 6.410 23 O -0.277 6.277 24 C -0.018 4.018 25 C -0.202 4.202 26 C -0.055 4.055 27 C -0.145 4.145 28 H 0.252 0.748 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.503 16.640 8.684 19.560 hybrid contribution 0.245 -0.915 -0.346 1.008 sum -5.258 15.725 8.338 18.560 Atomic orbital electron populations 1.24932 0.95977 1.04737 1.00132 1.23100 0.94488 0.96821 1.00048 1.18047 0.85607 1.00882 0.83508 1.43740 1.55134 1.04989 1.11176 1.19557 1.30656 0.83769 1.14225 0.90814 1.25919 0.95224 1.01413 0.96969 1.70175 1.17870 1.27895 1.33923 0.85096 0.78396 0.77724 0.78393 1.20057 1.19110 1.20409 1.17636 0.82862 0.83501 0.85050 1.90559 1.53299 1.87773 1.20279 1.19344 0.95034 0.99353 1.09919 1.20851 0.96126 0.87198 0.95672 1.20669 0.92115 1.02569 0.99826 1.41249 1.10053 1.19372 1.38693 0.71693 1.18426 0.86494 0.99714 1.11995 1.19550 0.83610 0.80393 0.77031 1.90847 1.18653 1.77026 1.54520 1.86542 1.42782 1.33202 1.65144 1.23367 0.98479 0.86229 0.93743 1.21832 0.97960 0.97227 1.03203 1.19812 0.96473 0.92653 0.96536 1.20362 0.89692 1.01452 1.03018 0.74771 0.89628 0.90642 0.91744 0.88660 0.92337 0.87087 0.90997 0.91066 0.87990 0.91208 0.91192 0.91112 0.89272 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.79 17.01 74.32 1.26 -7.53 16 2 C -0.14 -6.13 10.83 31.13 0.34 -5.79 16 3 C 0.24 11.16 4.91 84.57 0.42 11.58 16 4 N -0.43 -22.88 2.59 -649.24 -1.68 -24.56 16 5 C -0.35 -20.23 9.29 84.07 0.78 -19.45 16 6 H 0.07 4.56 7.41 -2.91 -0.02 4.54 16 7 C 0.01 0.48 4.82 84.93 0.41 0.89 16 8 N -0.86 -44.24 9.56 21.67 0.21 -44.03 16 9 Si 0.98 42.06 29.61 68.60 2.03 44.09 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.52 27.23 6.75 86.63 0.58 27.82 16 14 O -0.63 -38.38 16.76 -4.15 -0.07 -38.45 16 15 C -0.23 -9.57 4.07 -20.12 -0.08 -9.65 16 16 C 0.13 4.16 7.10 42.20 0.30 4.46 16 17 C -0.09 -2.73 10.10 71.23 0.72 -2.01 16 18 N -0.50 -13.08 6.01 -171.66 -1.03 -14.11 16 19 H 0.44 7.84 8.96 -92.71 -0.83 7.01 16 20 C -0.06 -1.80 7.02 39.98 0.28 -1.52 16 21 C 0.55 15.73 7.93 70.02 0.56 16.28 16 22 O -0.52 -16.98 14.49 19.50 0.28 -16.70 16 23 O -0.36 -7.99 10.23 -57.82 -0.59 -8.58 16 24 C 0.05 0.91 6.20 71.98 0.45 1.35 16 25 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 26 C -0.05 -1.75 5.93 -19.54 -0.12 -1.87 16 27 C -0.09 -3.21 9.63 71.24 0.69 -2.53 16 28 H 0.24 6.39 7.80 -4.42 -0.03 6.36 16 29 H 0.09 4.16 6.61 -2.38 -0.02 4.14 16 30 H 0.08 3.20 6.87 -2.39 -0.02 3.18 16 31 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 32 H 0.10 2.70 5.43 -2.39 -0.01 2.69 16 33 H 0.06 2.10 7.93 -2.38 -0.02 2.08 16 34 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.09 2.99 6.41 -2.38 -0.02 2.98 16 42 H 0.05 2.11 8.05 -2.39 -0.02 2.09 16 Total: -1.00 -73.94 363.23 6.70 -67.24 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.23 Total: 23.75 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 7.32 Total: 11.36 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.51 Total: -82.70 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -0.38 Total: -63.73 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -73.94 6.70 -67.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491019890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.140 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds