Wall clock time and date at job start Tue Mar 31 2020 12:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 115.54818 * 2 1 4 4 C 1.53002 * 117.49837 * 214.29554 * 2 1 3 5 5 C 1.52998 * 117.49768 * 145.67297 * 2 1 3 6 6 H 1.09005 * 117.49758 * 214.99739 * 5 2 1 7 7 C 1.50703 * 117.50155 * 0.02562 * 5 2 1 8 8 C 1.35152 * 125.48332 * 240.00519 * 7 5 2 9 9 C 1.40312 * 107.20479 * 179.76183 * 8 7 5 10 10 C 1.37945 * 106.52858 * 0.40452 * 9 8 7 11 11 C 1.41612 * 126.10426 * 179.85132 * 10 9 8 12 12 C 1.35630 * 120.00030 * 221.70412 * 11 10 9 13 13 C 1.41550 * 119.99942 * 9.60065 * 12 11 10 14 14 O 1.21777 * 119.99830 * 6.80530 * 13 12 11 15 15 N 1.34772 * 119.99740 * 186.80165 * 13 12 11 16 16 C 1.46505 * 120.00004 * 179.72226 * 15 13 12 17 17 C 1.50697 * 109.47163 * 180.27898 * 16 15 13 18 18 O 1.21291 * 119.99990 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99716 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00121 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00048 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00603 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99447 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47228 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46911 * 119.99974 * 24 22 20 27 27 H 1.48502 * 109.47268 * 240.00015 * 24 22 20 28 28 O 1.34014 * 125.48032 * 60.01972 * 7 5 2 29 29 H 1.09002 * 109.46832 * 274.32641 * 1 2 3 30 30 H 1.08997 * 109.46858 * 34.32506 * 1 2 3 31 31 H 1.09000 * 109.46993 * 154.32877 * 1 2 3 32 32 H 1.08997 * 117.49957 * 145.01988 * 4 2 1 33 33 H 1.08999 * 117.49655 * 359.97438 * 4 2 1 34 34 H 1.08001 * 126.39395 * 0.03163 * 8 7 5 35 35 H 1.08001 * 126.73807 * 180.25762 * 9 8 7 36 36 H 1.08000 * 119.99626 * 41.70619 * 11 10 9 37 37 H 1.07995 * 119.99625 * 189.59369 * 12 11 10 38 38 H 0.96993 * 120.00107 * 0.02562 * 15 13 12 39 39 H 1.09004 * 109.46845 * 300.28272 * 16 15 13 40 40 H 1.08998 * 109.47016 * 60.27478 * 16 15 13 41 41 H 0.97001 * 120.00334 * 359.97438 * 19 17 16 42 42 H 0.97001 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 3.1714 -0.8747 1.2688 7 6 1.3720 -2.1406 1.4610 8 6 1.3723 -2.3947 2.7884 9 6 0.4241 -3.4031 3.0181 10 6 -0.1115 -3.7256 1.7885 11 6 -1.1081 -4.7011 1.5424 12 6 -1.0022 -5.5229 0.4686 13 6 0.1937 -5.5479 -0.2882 14 8 1.1692 -4.9271 0.0940 15 7 0.2528 -6.2588 -1.4317 16 6 1.4886 -6.2798 -2.2182 17 6 1.2901 -7.1350 -3.4430 18 8 0.2213 -7.6736 -3.6398 19 7 2.3002 -7.3014 -4.3196 20 6 2.1196 -8.0790 -5.4341 21 1 1.1679 -8.5586 -5.6095 22 6 3.1607 -8.2501 -6.3382 23 7 4.3185 -7.6661 -6.1252 24 14 2.9147 -9.3102 -7.8564 25 1 1.5314 -9.8503 -7.8642 26 1 3.1316 -8.4886 -9.0743 27 1 3.8853 -10.4340 -7.8381 28 8 0.4795 -2.9416 0.8628 29 1 -0.3633 0.0775 1.0248 30 1 -0.3633 0.8487 -0.5795 31 1 -0.3633 -0.9262 -0.4452 32 1 3.1715 -0.8755 -1.2681 33 1 1.6112 -1.8590 -1.2674 34 1 1.9847 -1.9089 3.5337 35 1 0.1661 -3.8424 3.9704 36 1 -1.9526 -4.7906 2.2097 37 1 -1.8302 -6.1583 0.1912 38 1 -0.5243 -6.7529 -1.7362 39 1 1.7435 -5.2643 -2.5215 40 1 2.2968 -6.6921 -1.6141 41 1 3.1548 -6.8703 -4.1624 42 1 5.0455 -7.7858 -6.7561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492794715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:02 Heat of formation + Delta-G solvation = -12.770953 kcal Electronic energy + Delta-G solvation = -25980.281525 eV Core-core repulsion = 22121.549009 eV Total energy + Delta-G solvation = -3858.732516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42911 -39.67472 -38.19227 -37.78563 -34.55489 -33.98325 -33.58583 -32.79629 -31.38349 -29.55028 -28.54985 -27.47055 -24.96347 -23.85954 -22.10098 -21.69341 -20.93849 -19.91043 -19.67921 -19.23205 -18.09341 -17.62009 -16.33404 -16.03913 -15.90096 -15.34314 -15.21879 -15.15946 -14.63207 -14.22496 -13.98737 -13.74826 -13.62602 -13.31920 -13.14491 -12.99105 -12.77726 -12.57406 -12.26380 -12.14864 -11.92818 -11.83140 -11.63555 -11.57376 -11.14634 -10.70407 -10.41140 -10.32686 -10.19623 -10.00551 -9.73848 -9.64872 -9.58107 -8.70982 -8.62837 -8.10192 -7.74256 -6.51674 -3.93590 0.59317 2.05415 2.69572 3.05701 3.10027 3.22016 3.28489 3.55935 3.57605 3.75323 3.76316 4.12259 4.39206 4.56195 4.71371 4.81866 4.89169 4.96448 5.08567 5.13953 5.17069 5.21320 5.34164 5.55547 5.63156 5.70580 5.72474 5.76381 5.81261 5.91164 5.96726 5.98655 6.04553 6.07032 6.09347 6.16509 6.31618 6.60500 6.73691 7.32257 7.46053 7.87200 7.92417 8.44650 8.52680 9.04635 9.39460 9.87374 10.65348 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.002810 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.676892 B = 9963.692383 C =10992.689316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.142 4.142 3 H 0.111 0.889 4 C -0.160 4.160 5 C -0.085 4.085 6 H 0.131 0.869 7 C 0.048 3.952 8 C -0.218 4.218 9 C -0.183 4.183 10 C 0.013 3.987 11 C -0.005 4.005 12 C -0.193 4.193 13 C 0.533 3.467 14 O -0.533 6.533 15 N -0.703 5.703 16 C 0.111 3.889 17 C 0.428 3.572 18 O -0.598 6.598 19 N -0.550 5.550 20 C -0.304 4.304 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.932 3.068 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 O -0.128 6.128 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.410 0.590 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 13.124 16.314 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 H 0.129 0.871 4 C -0.197 4.197 5 C -0.103 4.103 6 H 0.149 0.851 7 C -0.004 4.004 8 C -0.237 4.237 9 C -0.202 4.202 10 C -0.037 4.037 11 C -0.025 4.025 12 C -0.214 4.214 13 C 0.322 3.678 14 O -0.413 6.413 15 N -0.356 5.356 16 C -0.017 4.017 17 C 0.214 3.786 18 O -0.484 6.484 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 O -0.022 6.022 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.171 0.829 37 H 0.156 0.844 38 H 0.248 0.752 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.229 0.771 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.603 13.157 15.962 21.714 hybrid contribution 0.336 -0.716 -0.636 1.015 sum -6.267 12.442 15.325 20.711 Atomic orbital electron populations 1.21373 0.92597 1.02322 1.01837 1.22500 0.95860 0.94117 1.03576 0.87108 1.23188 1.03034 1.00998 0.92466 1.20614 0.98632 0.96379 0.94637 0.85102 1.21350 0.93132 0.94643 0.91306 1.21217 1.04473 1.02773 0.95271 1.22035 1.00617 1.00236 0.97298 1.19455 0.99447 0.97913 0.86862 1.20571 0.95068 0.90765 0.96126 1.22337 0.98583 1.02654 0.97844 1.17104 0.89276 0.80057 0.81364 1.90868 1.37758 1.43387 1.69268 1.45665 1.16179 1.50813 1.22975 1.20901 0.87468 1.00782 0.92505 1.19775 0.85924 0.86913 0.85978 1.90492 1.26684 1.53751 1.77504 1.41804 1.12780 1.43592 1.20266 1.19780 1.00190 1.25213 0.98207 0.87642 1.25326 0.94779 0.97957 0.99683 1.69623 1.02943 1.43222 1.37705 0.85760 0.78714 0.79205 0.80427 1.19127 1.20608 1.20607 1.84154 1.42233 1.39704 1.36117 0.92327 0.92045 0.92053 0.87987 0.87831 0.83905 0.83597 0.82892 0.84393 0.75201 0.89994 0.89990 0.77059 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.15 37.16 0.34 -0.90 16 2 C -0.14 -1.39 6.41 -90.62 -0.58 -1.97 16 3 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.16 -1.84 9.81 -26.73 -0.26 -2.10 16 5 C -0.08 -0.95 6.23 -91.77 -0.57 -1.52 16 6 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 7 C 0.05 0.66 5.89 -35.40 -0.21 0.45 16 8 C -0.22 -2.72 10.76 -39.90 -0.43 -3.14 16 9 C -0.18 -2.24 10.90 -38.91 -0.42 -2.66 16 10 C 0.01 0.18 5.21 -38.40 -0.20 -0.02 16 11 C -0.01 -0.06 9.95 -39.23 -0.39 -0.45 16 12 C -0.19 -2.35 9.85 -39.25 -0.39 -2.74 16 13 C 0.53 8.67 7.35 -15.00 -0.11 8.56 16 14 O -0.53 -10.09 12.58 -19.40 -0.24 -10.34 16 15 N -0.70 -11.99 5.52 -64.43 -0.36 -12.35 16 16 C 0.11 2.11 6.15 -5.19 -0.03 2.08 16 17 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 18 O -0.60 -15.43 15.24 5.55 0.08 -15.35 16 19 N -0.55 -13.77 5.29 -10.97 -0.06 -13.83 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 24 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 O -0.13 -1.95 6.98 -19.83 -0.14 -2.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.72 7.26 -51.93 -0.38 0.35 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.44 7.85 -51.93 -0.41 1.03 16 34 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.41 6.81 7.39 -40.82 -0.30 6.50 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -32.89 365.31 -8.66 -41.55 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -5.57 Total: 17.06 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.58 Total: -2.46 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.31 Total: -49.46 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.30 Total: -27.78 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.89 -8.66 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492794715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.781 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds