Wall clock time and date at job start Tue Mar 31 2020 12:19:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09001 * 115.54818 * 2 1
4 4 C 1.53002 * 117.49837 * 214.29554 * 2 1 3
5 5 C 1.52998 * 117.49768 * 145.67297 * 2 1 3
6 6 H 1.09005 * 117.49758 * 214.99739 * 5 2 1
7 7 C 1.50703 * 117.50155 * 0.02562 * 5 2 1
8 8 C 1.35152 * 125.48332 * 240.00519 * 7 5 2
9 9 C 1.40312 * 107.20479 * 179.76183 * 8 7 5
10 10 C 1.37945 * 106.52858 * 0.40452 * 9 8 7
11 11 C 1.41612 * 126.10426 * 179.85132 * 10 9 8
12 12 C 1.35630 * 120.00030 * 221.70412 * 11 10 9
13 13 C 1.41550 * 119.99942 * 9.60065 * 12 11 10
14 14 O 1.21777 * 119.99830 * 6.80530 * 13 12 11
15 15 N 1.34772 * 119.99740 * 186.80165 * 13 12 11
16 16 C 1.46505 * 120.00004 * 179.72226 * 15 13 12
17 17 C 1.50697 * 109.47163 * 180.27898 * 16 15 13
18 18 O 1.21291 * 119.99990 * 0.02562 * 17 16 15
19 19 N 1.34776 * 119.99716 * 180.02562 * 17 16 15
20 20 C 1.37094 * 120.00121 * 180.02562 * 19 17 16
21 21 H 1.07999 * 120.00048 * 359.97438 * 20 19 17
22 22 C 1.38952 * 120.00603 * 179.97438 * 20 19 17
23 23 N 1.31408 * 119.99447 * 359.97438 * 22 20 19
24 24 Si 1.86796 * 120.00230 * 179.97438 * 22 20 19
25 25 H 1.48496 * 109.47228 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.46911 * 119.99974 * 24 22 20
27 27 H 1.48502 * 109.47268 * 240.00015 * 24 22 20
28 28 O 1.34014 * 125.48032 * 60.01972 * 7 5 2
29 29 H 1.09002 * 109.46832 * 274.32641 * 1 2 3
30 30 H 1.08997 * 109.46858 * 34.32506 * 1 2 3
31 31 H 1.09000 * 109.46993 * 154.32877 * 1 2 3
32 32 H 1.08997 * 117.49957 * 145.01988 * 4 2 1
33 33 H 1.08999 * 117.49655 * 359.97438 * 4 2 1
34 34 H 1.08001 * 126.39395 * 0.03163 * 8 7 5
35 35 H 1.08001 * 126.73807 * 180.25762 * 9 8 7
36 36 H 1.08000 * 119.99626 * 41.70619 * 11 10 9
37 37 H 1.07995 * 119.99625 * 189.59369 * 12 11 10
38 38 H 0.96993 * 120.00107 * 0.02562 * 15 13 12
39 39 H 1.09004 * 109.46845 * 300.28272 * 16 15 13
40 40 H 1.08998 * 109.47016 * 60.27478 * 16 15 13
41 41 H 0.97001 * 120.00334 * 359.97438 * 19 17 16
42 42 H 0.97001 * 120.00159 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0001 0.9834 0.0000
4 6 2.2365 -1.1212 -0.7647
5 6 2.2364 -1.1208 0.7653
6 1 3.1714 -0.8747 1.2688
7 6 1.3720 -2.1406 1.4610
8 6 1.3723 -2.3947 2.7884
9 6 0.4241 -3.4031 3.0181
10 6 -0.1115 -3.7256 1.7885
11 6 -1.1081 -4.7011 1.5424
12 6 -1.0022 -5.5229 0.4686
13 6 0.1937 -5.5479 -0.2882
14 8 1.1692 -4.9271 0.0940
15 7 0.2528 -6.2588 -1.4317
16 6 1.4886 -6.2798 -2.2182
17 6 1.2901 -7.1350 -3.4430
18 8 0.2213 -7.6736 -3.6398
19 7 2.3002 -7.3014 -4.3196
20 6 2.1196 -8.0790 -5.4341
21 1 1.1679 -8.5586 -5.6095
22 6 3.1607 -8.2501 -6.3382
23 7 4.3185 -7.6661 -6.1252
24 14 2.9147 -9.3102 -7.8564
25 1 1.5314 -9.8503 -7.8642
26 1 3.1316 -8.4886 -9.0743
27 1 3.8853 -10.4340 -7.8381
28 8 0.4795 -2.9416 0.8628
29 1 -0.3633 0.0775 1.0248
30 1 -0.3633 0.8487 -0.5795
31 1 -0.3633 -0.9262 -0.4452
32 1 3.1715 -0.8755 -1.2681
33 1 1.6112 -1.8590 -1.2674
34 1 1.9847 -1.9089 3.5337
35 1 0.1661 -3.8424 3.9704
36 1 -1.9526 -4.7906 2.2097
37 1 -1.8302 -6.1583 0.1912
38 1 -0.5243 -6.7529 -1.7362
39 1 1.7435 -5.2643 -2.5215
40 1 2.2968 -6.6921 -1.6141
41 1 3.1548 -6.8703 -4.1624
42 1 5.0455 -7.7858 -6.7561
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000492794715.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:01
Heat of formation + Delta-G solvation = -33.250545 kcal
Electronic energy + Delta-G solvation = -25981.169587 eV
Core-core repulsion = 22121.549009 eV
Total energy + Delta-G solvation = -3859.620577 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 318.141 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-43.39154 -41.05842 -39.96462 -38.66292 -36.29728 -35.38778 -34.87919 -33.75894
-33.40254 -30.60122 -29.62314 -28.75167 -26.68473 -25.07900 -23.12609 -22.66672
-21.86636 -21.40909 -20.86653 -20.49618 -20.01886 -18.82866 -17.51199 -17.38746
-17.03095 -16.83804 -16.69855 -16.31446 -16.18664 -15.76884 -15.41103 -15.23963
-14.81583 -14.20343 -14.15826 -14.00553 -13.90208 -13.68032 -13.65838 -13.57141
-13.40458 -13.09016 -12.92937 -12.73480 -12.47101 -12.40285 -12.12357 -11.60397
-11.56930 -11.07949 -10.99884 -10.92615 -10.59473 -10.52552 -10.15861 -10.06709
-8.70102 -8.53401 -6.03953 -0.35829 1.08906 1.33372 1.41408 1.55795
1.74200 1.86951 2.10960 2.16975 2.36128 2.47113 2.90547 3.11606
3.13548 3.53109 3.74416 3.84152 3.92779 4.03091 4.18889 4.21831
4.31120 4.38765 4.39376 4.40936 4.52767 4.72266 4.83382 4.84541
4.85798 4.87648 4.98892 5.08635 5.13061 5.18913 5.29952 5.32805
5.36873 5.42969 5.72517 5.89382 6.37186 6.44041 6.58289 7.00781
7.23326 7.41378 7.90932 8.63856
Molecular weight = 318.14amu
Principal moments of inertia in cm(-1)
A = 0.016948 B = 0.002810 C = 0.002547
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1651.676892 B = 9963.692383 C =10992.689316
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.124 4.124
3 H 0.140 0.860
4 C -0.176 4.176
5 C -0.093 4.093
6 H 0.152 0.848
7 C 0.027 3.973
8 C -0.227 4.227
9 C -0.180 4.180
10 C -0.020 4.020
11 C 0.018 3.982
12 C -0.217 4.217
13 C 0.530 3.470
14 O -0.565 6.565
15 N -0.706 5.706
16 C 0.127 3.873
17 C 0.433 3.567
18 O -0.623 6.623
19 N -0.559 5.559
20 C -0.338 4.338
21 H 0.086 0.914
22 C -0.011 4.011
23 N -0.916 5.916
24 Si 0.998 3.002
25 H -0.269 1.269
26 H -0.270 1.270
27 H -0.270 1.270
28 O -0.153 6.153
29 H 0.060 0.940
30 H 0.078 0.922
31 H 0.035 0.965
32 H 0.115 0.885
33 H 0.070 0.930
34 H 0.165 0.835
35 H 0.174 0.826
36 H 0.202 0.798
37 H 0.170 0.830
38 H 0.413 0.587
39 H 0.086 0.914
40 H 0.088 0.912
41 H 0.398 0.602
42 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.146 13.841 17.520 23.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.142 4.142
3 H 0.158 0.842
4 C -0.213 4.213
5 C -0.111 4.111
6 H 0.170 0.830
7 C -0.025 4.025
8 C -0.246 4.246
9 C -0.199 4.199
10 C -0.070 4.070
11 C -0.002 4.002
12 C -0.238 4.238
13 C 0.322 3.678
14 O -0.447 6.447
15 N -0.360 5.360
16 C -0.001 4.001
17 C 0.220 3.780
18 O -0.511 6.511
19 N -0.194 5.194
20 C -0.467 4.467
21 H 0.104 0.896
22 C -0.211 4.211
23 N -0.556 5.556
24 Si 0.821 3.179
25 H -0.194 1.194
26 H -0.196 1.196
27 H -0.195 1.195
28 O -0.048 6.048
29 H 0.079 0.921
30 H 0.097 0.903
31 H 0.054 0.946
32 H 0.133 0.867
33 H 0.088 0.912
34 H 0.183 0.817
35 H 0.192 0.808
36 H 0.218 0.782
37 H 0.187 0.813
38 H 0.251 0.749
39 H 0.104 0.896
40 H 0.106 0.894
41 H 0.232 0.768
42 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -7.037 13.883 17.188 23.188
hybrid contribution 0.476 -0.856 -0.906 1.334
sum -6.561 13.027 16.282 21.860
Atomic orbital electron populations
1.21365 0.92966 1.01710 1.01979 1.22632 0.95593 0.94655 1.01303
0.84225 1.23122 1.03571 1.01683 0.92956 1.20873 0.99467 0.96663
0.94113 0.83050 1.21914 0.93308 0.95130 0.92189 1.21608 1.04751
1.02883 0.95341 1.22459 0.99878 0.99633 0.97979 1.20149 1.00620
0.98917 0.87324 1.21204 0.94991 0.88384 0.95576 1.22388 0.98027
1.05027 0.98311 1.17773 0.90388 0.78826 0.80835 1.90854 1.39303
1.44579 1.69956 1.45688 1.15411 1.51565 1.23355 1.20645 0.88821
0.99823 0.90832 1.20409 0.84981 0.86213 0.86426 1.90464 1.27616
1.54724 1.78324 1.41856 1.13302 1.43885 1.20407 1.19787 1.00113
1.26890 0.99916 0.89567 1.26156 0.94189 0.98712 1.02080 1.69688
1.03474 1.43735 1.38739 0.84796 0.78522 0.77720 0.76844 1.19385
1.19550 1.19544 1.84146 1.42917 1.40435 1.37288 0.92135 0.90303
0.94590 0.86661 0.91171 0.81719 0.80846 0.78157 0.81263 0.74899
0.89638 0.89418 0.76806 0.91027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.40 9.15 71.98 0.66 -1.74 16
2 C -0.12 -2.29 6.41 -10.79 -0.07 -2.36 16
3 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16
4 C -0.18 -4.14 9.81 30.60 0.30 -3.84 16
5 C -0.09 -2.04 6.23 -11.54 -0.07 -2.11 16
6 H 0.15 2.56 8.14 -2.38 -0.02 2.54 16
7 C 0.03 0.72 5.89 24.98 0.15 0.87 16
8 C -0.23 -5.35 10.76 22.06 0.24 -5.11 16
9 C -0.18 -4.10 10.90 22.71 0.25 -3.85 16
10 C -0.02 -0.53 5.21 23.03 0.12 -0.41 16
11 C 0.02 0.35 9.95 22.50 0.22 0.57 16
12 C -0.22 -4.99 9.85 22.48 0.22 -4.77 16
13 C 0.53 17.31 7.35 85.06 0.63 17.94 16
14 O -0.57 -21.82 12.58 18.85 0.24 -21.59 16
15 N -0.71 -24.44 5.52 -475.93 -2.63 -27.06 16
16 C 0.13 4.93 6.15 85.63 0.53 5.46 16
17 C 0.43 20.64 7.85 87.66 0.69 21.33 16
18 O -0.62 -32.95 15.24 -3.06 -0.05 -33.00 16
19 N -0.56 -28.82 5.29 -306.99 -1.62 -30.44 16
20 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16
21 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16
22 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16
23 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16
24 Si 1.00 42.10 29.55 68.60 2.03 44.13 16
25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16
26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16
27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16
28 O -0.15 -4.73 6.98 17.31 0.12 -4.61 16
29 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16
30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
31 H 0.03 0.88 7.26 -2.39 -0.02 0.86 16
32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16
33 H 0.07 2.11 7.85 -2.39 -0.02 2.10 16
34 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16
35 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16
36 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16
37 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16
38 H 0.41 13.83 7.39 -92.71 -0.69 13.15 16
39 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16
40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16
41 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16
42 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16
Total: -1.00 -72.91 365.31 3.15 -69.76
By element:
Atomic # 1 Polarization: 48.33 SS G_CDS: -0.35 Total: 47.98 kcal
Atomic # 6 Polarization: -1.36 SS G_CDS: 5.14 Total: 3.78 kcal
Atomic # 7 Polarization: -102.49 SS G_CDS: -3.97 Total: -106.46 kcal
Atomic # 8 Polarization: -59.50 SS G_CDS: 0.31 Total: -59.19 kcal
Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal
Total: -72.91 3.15 -69.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000492794715.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.505 kcal
(2) G-P(sol) polarization free energy of solvation -72.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.405 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds