Wall clock time and date at job start Tue Mar 31 2020 12:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 115.54818 * 2 1 4 4 C 1.53002 * 117.49837 * 214.29554 * 2 1 3 5 5 C 1.52998 * 117.49768 * 145.67297 * 2 1 3 6 6 H 1.09005 * 117.49758 * 214.99739 * 5 2 1 7 7 C 1.50703 * 117.50155 * 0.02562 * 5 2 1 8 8 C 1.35152 * 125.48332 * 240.00519 * 7 5 2 9 9 C 1.40312 * 107.20479 * 179.76183 * 8 7 5 10 10 C 1.37945 * 106.52858 * 0.40452 * 9 8 7 11 11 C 1.41612 * 126.10426 * 179.85132 * 10 9 8 12 12 C 1.35630 * 120.00030 * 221.70412 * 11 10 9 13 13 C 1.41550 * 119.99942 * 9.60065 * 12 11 10 14 14 O 1.21777 * 119.99830 * 6.80530 * 13 12 11 15 15 N 1.34772 * 119.99740 * 186.80165 * 13 12 11 16 16 C 1.46505 * 120.00004 * 179.72226 * 15 13 12 17 17 C 1.50697 * 109.47163 * 180.27898 * 16 15 13 18 18 O 1.21291 * 119.99990 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99716 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00121 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00048 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00603 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99447 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47228 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46911 * 119.99974 * 24 22 20 27 27 H 1.48502 * 109.47268 * 240.00015 * 24 22 20 28 28 O 1.34014 * 125.48032 * 60.01972 * 7 5 2 29 29 H 1.09002 * 109.46832 * 274.32641 * 1 2 3 30 30 H 1.08997 * 109.46858 * 34.32506 * 1 2 3 31 31 H 1.09000 * 109.46993 * 154.32877 * 1 2 3 32 32 H 1.08997 * 117.49957 * 145.01988 * 4 2 1 33 33 H 1.08999 * 117.49655 * 359.97438 * 4 2 1 34 34 H 1.08001 * 126.39395 * 0.03163 * 8 7 5 35 35 H 1.08001 * 126.73807 * 180.25762 * 9 8 7 36 36 H 1.08000 * 119.99626 * 41.70619 * 11 10 9 37 37 H 1.07995 * 119.99625 * 189.59369 * 12 11 10 38 38 H 0.96993 * 120.00107 * 0.02562 * 15 13 12 39 39 H 1.09004 * 109.46845 * 300.28272 * 16 15 13 40 40 H 1.08998 * 109.47016 * 60.27478 * 16 15 13 41 41 H 0.97001 * 120.00334 * 359.97438 * 19 17 16 42 42 H 0.97001 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 3.1714 -0.8747 1.2688 7 6 1.3720 -2.1406 1.4610 8 6 1.3723 -2.3947 2.7884 9 6 0.4241 -3.4031 3.0181 10 6 -0.1115 -3.7256 1.7885 11 6 -1.1081 -4.7011 1.5424 12 6 -1.0022 -5.5229 0.4686 13 6 0.1937 -5.5479 -0.2882 14 8 1.1692 -4.9271 0.0940 15 7 0.2528 -6.2588 -1.4317 16 6 1.4886 -6.2798 -2.2182 17 6 1.2901 -7.1350 -3.4430 18 8 0.2213 -7.6736 -3.6398 19 7 2.3002 -7.3014 -4.3196 20 6 2.1196 -8.0790 -5.4341 21 1 1.1679 -8.5586 -5.6095 22 6 3.1607 -8.2501 -6.3382 23 7 4.3185 -7.6661 -6.1252 24 14 2.9147 -9.3102 -7.8564 25 1 1.5314 -9.8503 -7.8642 26 1 3.1316 -8.4886 -9.0743 27 1 3.8853 -10.4340 -7.8381 28 8 0.4795 -2.9416 0.8628 29 1 -0.3633 0.0775 1.0248 30 1 -0.3633 0.8487 -0.5795 31 1 -0.3633 -0.9262 -0.4452 32 1 3.1715 -0.8755 -1.2681 33 1 1.6112 -1.8590 -1.2674 34 1 1.9847 -1.9089 3.5337 35 1 0.1661 -3.8424 3.9704 36 1 -1.9526 -4.7906 2.2097 37 1 -1.8302 -6.1583 0.1912 38 1 -0.5243 -6.7529 -1.7362 39 1 1.7435 -5.2643 -2.5215 40 1 2.2968 -6.6921 -1.6141 41 1 3.1548 -6.8703 -4.1624 42 1 5.0455 -7.7858 -6.7561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492794715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:01 Heat of formation + Delta-G solvation = -33.250545 kcal Electronic energy + Delta-G solvation = -25981.169587 eV Core-core repulsion = 22121.549009 eV Total energy + Delta-G solvation = -3859.620577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39154 -41.05842 -39.96462 -38.66292 -36.29728 -35.38778 -34.87919 -33.75894 -33.40254 -30.60122 -29.62314 -28.75167 -26.68473 -25.07900 -23.12609 -22.66672 -21.86636 -21.40909 -20.86653 -20.49618 -20.01886 -18.82866 -17.51199 -17.38746 -17.03095 -16.83804 -16.69855 -16.31446 -16.18664 -15.76884 -15.41103 -15.23963 -14.81583 -14.20343 -14.15826 -14.00553 -13.90208 -13.68032 -13.65838 -13.57141 -13.40458 -13.09016 -12.92937 -12.73480 -12.47101 -12.40285 -12.12357 -11.60397 -11.56930 -11.07949 -10.99884 -10.92615 -10.59473 -10.52552 -10.15861 -10.06709 -8.70102 -8.53401 -6.03953 -0.35829 1.08906 1.33372 1.41408 1.55795 1.74200 1.86951 2.10960 2.16975 2.36128 2.47113 2.90547 3.11606 3.13548 3.53109 3.74416 3.84152 3.92779 4.03091 4.18889 4.21831 4.31120 4.38765 4.39376 4.40936 4.52767 4.72266 4.83382 4.84541 4.85798 4.87648 4.98892 5.08635 5.13061 5.18913 5.29952 5.32805 5.36873 5.42969 5.72517 5.89382 6.37186 6.44041 6.58289 7.00781 7.23326 7.41378 7.90932 8.63856 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016948 B = 0.002810 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.676892 B = 9963.692383 C =10992.689316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.140 0.860 4 C -0.176 4.176 5 C -0.093 4.093 6 H 0.152 0.848 7 C 0.027 3.973 8 C -0.227 4.227 9 C -0.180 4.180 10 C -0.020 4.020 11 C 0.018 3.982 12 C -0.217 4.217 13 C 0.530 3.470 14 O -0.565 6.565 15 N -0.706 5.706 16 C 0.127 3.873 17 C 0.433 3.567 18 O -0.623 6.623 19 N -0.559 5.559 20 C -0.338 4.338 21 H 0.086 0.914 22 C -0.011 4.011 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.270 1.270 28 O -0.153 6.153 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.202 0.798 37 H 0.170 0.830 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.398 0.602 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 13.841 17.520 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.158 0.842 4 C -0.213 4.213 5 C -0.111 4.111 6 H 0.170 0.830 7 C -0.025 4.025 8 C -0.246 4.246 9 C -0.199 4.199 10 C -0.070 4.070 11 C -0.002 4.002 12 C -0.238 4.238 13 C 0.322 3.678 14 O -0.447 6.447 15 N -0.360 5.360 16 C -0.001 4.001 17 C 0.220 3.780 18 O -0.511 6.511 19 N -0.194 5.194 20 C -0.467 4.467 21 H 0.104 0.896 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.195 1.195 28 O -0.048 6.048 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.183 0.817 35 H 0.192 0.808 36 H 0.218 0.782 37 H 0.187 0.813 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.232 0.768 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.037 13.883 17.188 23.188 hybrid contribution 0.476 -0.856 -0.906 1.334 sum -6.561 13.027 16.282 21.860 Atomic orbital electron populations 1.21365 0.92966 1.01710 1.01979 1.22632 0.95593 0.94655 1.01303 0.84225 1.23122 1.03571 1.01683 0.92956 1.20873 0.99467 0.96663 0.94113 0.83050 1.21914 0.93308 0.95130 0.92189 1.21608 1.04751 1.02883 0.95341 1.22459 0.99878 0.99633 0.97979 1.20149 1.00620 0.98917 0.87324 1.21204 0.94991 0.88384 0.95576 1.22388 0.98027 1.05027 0.98311 1.17773 0.90388 0.78826 0.80835 1.90854 1.39303 1.44579 1.69956 1.45688 1.15411 1.51565 1.23355 1.20645 0.88821 0.99823 0.90832 1.20409 0.84981 0.86213 0.86426 1.90464 1.27616 1.54724 1.78324 1.41856 1.13302 1.43885 1.20407 1.19787 1.00113 1.26890 0.99916 0.89567 1.26156 0.94189 0.98712 1.02080 1.69688 1.03474 1.43735 1.38739 0.84796 0.78522 0.77720 0.76844 1.19385 1.19550 1.19544 1.84146 1.42917 1.40435 1.37288 0.92135 0.90303 0.94590 0.86661 0.91171 0.81719 0.80846 0.78157 0.81263 0.74899 0.89638 0.89418 0.76806 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 9.15 71.98 0.66 -1.74 16 2 C -0.12 -2.29 6.41 -10.79 -0.07 -2.36 16 3 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.18 -4.14 9.81 30.60 0.30 -3.84 16 5 C -0.09 -2.04 6.23 -11.54 -0.07 -2.11 16 6 H 0.15 2.56 8.14 -2.38 -0.02 2.54 16 7 C 0.03 0.72 5.89 24.98 0.15 0.87 16 8 C -0.23 -5.35 10.76 22.06 0.24 -5.11 16 9 C -0.18 -4.10 10.90 22.71 0.25 -3.85 16 10 C -0.02 -0.53 5.21 23.03 0.12 -0.41 16 11 C 0.02 0.35 9.95 22.50 0.22 0.57 16 12 C -0.22 -4.99 9.85 22.48 0.22 -4.77 16 13 C 0.53 17.31 7.35 85.06 0.63 17.94 16 14 O -0.57 -21.82 12.58 18.85 0.24 -21.59 16 15 N -0.71 -24.44 5.52 -475.93 -2.63 -27.06 16 16 C 0.13 4.93 6.15 85.63 0.53 5.46 16 17 C 0.43 20.64 7.85 87.66 0.69 21.33 16 18 O -0.62 -32.95 15.24 -3.06 -0.05 -33.00 16 19 N -0.56 -28.82 5.29 -306.99 -1.62 -30.44 16 20 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 21 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 23 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 24 Si 1.00 42.10 29.55 68.60 2.03 44.13 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 O -0.15 -4.73 6.98 17.31 0.12 -4.61 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 0.88 7.26 -2.39 -0.02 0.86 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.07 2.11 7.85 -2.39 -0.02 2.10 16 34 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 35 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.41 13.83 7.39 -92.71 -0.69 13.15 16 39 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 40 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 42 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -72.91 365.31 3.15 -69.76 By element: Atomic # 1 Polarization: 48.33 SS G_CDS: -0.35 Total: 47.98 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.14 Total: 3.78 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -3.97 Total: -106.46 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: 0.31 Total: -59.19 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -72.91 3.15 -69.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492794715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.505 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds