Wall clock time and date at job start Tue Mar 31 2020 12:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 115.56200 * 2 1 4 4 C 1.53000 * 117.50105 * 214.30404 * 2 1 3 5 5 C 1.53000 * 60.00108 * 252.51610 * 4 2 1 6 6 H 1.08997 * 117.49723 * 107.51665 * 5 4 2 7 7 C 1.50706 * 117.49444 * 252.51078 * 5 4 2 8 8 C 1.35156 * 125.47693 * 188.60742 * 7 5 4 9 9 C 1.40320 * 107.20278 * 179.97438 * 8 7 5 10 10 C 1.37952 * 106.52549 * 0.02562 * 9 8 7 11 11 C 1.41609 * 126.10209 * 180.02562 * 10 9 8 12 12 C 1.35626 * 119.99632 * 359.97438 * 11 10 9 13 13 C 1.41553 * 119.99874 * 180.02562 * 12 11 10 14 14 O 1.21782 * 119.99516 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00422 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00208 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47159 * 179.97438 * 16 15 13 18 18 O 1.21294 * 119.99892 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99808 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99467 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00617 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99846 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99715 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00274 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46962 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46927 * 120.00111 * 24 22 20 27 27 H 1.48491 * 109.47275 * 240.00187 * 24 22 20 28 28 O 1.34009 * 125.48361 * 8.30670 * 7 5 4 29 29 H 1.09000 * 109.47472 * 274.31024 * 1 2 3 30 30 H 1.09000 * 109.46705 * 34.31741 * 1 2 3 31 31 H 1.09002 * 109.46933 * 154.30964 * 1 2 3 32 32 H 1.08999 * 117.49784 * 145.02264 * 4 2 1 33 33 H 1.09004 * 117.51820 * 359.97438 * 4 2 1 34 34 H 1.07993 * 126.40286 * 359.95916 * 8 7 5 35 35 H 1.07994 * 126.73488 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.99976 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.00471 * 0.02562 * 12 11 10 38 38 H 0.97002 * 119.99902 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.47097 * 300.00084 * 16 15 13 40 40 H 1.08996 * 109.47630 * 59.99816 * 16 15 13 41 41 H 0.96994 * 120.00145 * 0.02562 * 19 17 16 42 42 H 0.97001 * 119.99253 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7648 5 6 2.2364 -1.1210 0.7652 6 1 1.6115 -1.8587 1.2684 7 6 3.5293 -0.7810 1.4610 8 6 3.7581 -0.8911 2.7885 9 6 5.0789 -0.4764 3.0177 10 6 5.5990 -0.1261 1.7890 11 6 6.9092 0.3518 1.5431 12 6 7.7806 0.5011 2.5715 13 6 9.0901 0.9793 2.3258 14 8 9.4342 1.2562 1.1909 15 7 9.9564 1.1272 3.3476 16 6 11.3117 1.6216 3.0932 17 6 12.0718 1.6949 4.3924 18 8 11.5344 1.3660 5.4289 19 7 13.3491 2.1249 4.4025 20 6 14.0403 2.1921 5.5845 21 1 13.5616 1.9000 6.5075 22 6 15.3570 2.6359 5.5951 23 7 15.9395 2.9918 4.4721 24 14 16.2993 2.7268 7.2055 25 1 15.4249 2.2732 8.3169 26 1 17.4961 1.8510 7.1288 27 1 16.7259 4.1277 7.4510 28 8 4.6387 -0.3264 0.8624 29 1 -0.3634 0.0772 1.0247 30 1 -0.3633 0.8488 -0.5794 31 1 -0.3633 -0.9261 -0.4455 32 1 3.1716 -0.8753 -1.2681 33 1 1.6116 -1.8591 -1.2678 34 1 3.0556 -1.2339 3.5337 35 1 5.5879 -0.4381 3.9694 36 1 7.2143 0.5974 0.5366 37 1 7.4756 0.2551 3.5778 38 1 9.6824 0.9063 4.2515 39 1 11.8235 0.9436 2.4101 40 1 11.2585 2.6147 2.6473 41 1 13.7790 2.3876 3.5736 42 1 16.8585 3.3020 4.4796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492794718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:13 Heat of formation + Delta-G solvation = -23.649436 kcal Electronic energy + Delta-G solvation = -24132.889755 eV Core-core repulsion = 20273.685513 eV Total energy + Delta-G solvation = -3859.204242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.91327 -39.76607 -38.27656 -38.14246 -34.77350 -34.37543 -33.67278 -33.09568 -31.39086 -30.09960 -28.71141 -27.43045 -25.16483 -24.11421 -22.39564 -21.94996 -21.18887 -20.39928 -19.77240 -19.25480 -18.07297 -17.76454 -17.02670 -16.42215 -15.78702 -15.72614 -15.25501 -15.13748 -14.90562 -14.42924 -14.17502 -13.99643 -13.83341 -13.63022 -13.48992 -13.33438 -13.18982 -12.67211 -12.37768 -12.21146 -12.01483 -11.97309 -11.87681 -11.63719 -11.23541 -11.14528 -10.71813 -10.59767 -10.41153 -10.33043 -9.94236 -9.89441 -9.65232 -8.82626 -8.64033 -8.10807 -8.03955 -6.51972 -3.93961 0.25495 1.76203 2.40745 2.47235 3.10059 3.22243 3.28503 3.31347 3.50540 3.52968 3.74226 3.93637 4.11915 4.25898 4.30866 4.50926 4.68269 4.70363 4.78110 4.87465 5.00170 5.10594 5.16715 5.18747 5.24768 5.27169 5.45026 5.45277 5.52651 5.58752 5.72851 5.75970 5.82132 5.94056 5.96330 6.06959 6.12706 6.16550 6.66586 6.81103 7.45900 7.79684 7.91791 8.41032 8.45733 9.04230 9.38854 9.86615 10.64954 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.046891 B = 0.001631 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.982384 B =17163.185115 C =17575.523895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.138 4.138 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.086 4.086 6 H 0.136 0.864 7 C 0.036 3.964 8 C -0.206 4.206 9 C -0.163 4.163 10 C -0.003 4.003 11 C 0.004 3.996 12 C -0.188 4.188 13 C 0.546 3.454 14 O -0.555 6.555 15 N -0.700 5.700 16 C 0.108 3.892 17 C 0.428 3.572 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.106 0.894 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.933 3.067 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 O -0.162 6.162 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.412 0.588 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.590 -7.331 -8.376 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.156 4.156 3 H 0.127 0.873 4 C -0.202 4.202 5 C -0.104 4.104 6 H 0.154 0.846 7 C -0.015 4.015 8 C -0.225 4.225 9 C -0.183 4.183 10 C -0.052 4.052 11 C -0.016 4.016 12 C -0.208 4.208 13 C 0.335 3.665 14 O -0.437 6.437 15 N -0.353 5.353 16 C -0.020 4.020 17 C 0.213 3.787 18 O -0.484 6.484 19 N -0.184 5.184 20 C -0.435 4.435 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.534 5.534 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 O -0.058 6.058 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.171 0.829 35 H 0.176 0.824 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.250 0.750 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.404 -7.213 -8.791 29.669 hybrid contribution 0.818 0.091 0.951 1.258 sum -26.586 -7.122 -7.840 28.618 Atomic orbital electron populations 1.21398 0.91945 1.02419 1.02320 1.22541 0.95651 0.94783 1.02663 0.87339 1.23224 1.03296 1.01373 0.92277 1.20665 0.91834 1.03444 0.94418 0.84584 1.21615 0.86952 1.01296 0.91652 1.21421 0.97654 1.08144 0.95259 1.22390 0.95225 1.02494 0.98151 1.19755 0.90348 1.08164 0.86977 1.20168 0.87493 0.92923 1.01055 1.21858 0.94202 1.04828 0.99961 1.16842 0.85564 0.79086 0.84971 1.90834 1.79252 1.51774 1.21830 1.45639 1.12622 1.65658 1.11393 1.20965 0.82929 1.00835 0.97228 1.19753 0.83758 0.85471 0.89678 1.90495 1.68866 1.55403 1.33669 1.41801 1.09896 1.55863 1.10801 1.19788 0.94362 1.41711 0.87600 0.87604 1.25332 0.96951 0.96558 0.98876 1.69629 1.14188 1.43381 1.26237 0.85753 0.79179 0.77921 0.81206 1.19130 1.20616 1.20614 1.83992 1.19658 1.65120 1.37040 0.91799 0.91616 0.92198 0.87947 0.87720 0.82940 0.82416 0.83834 0.85032 0.74972 0.89692 0.89702 0.77015 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.19 37.16 0.38 -0.13 16 2 C -0.14 -0.82 6.11 -90.62 -0.55 -1.38 16 3 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.16 -0.99 9.81 -26.73 -0.26 -1.26 16 5 C -0.09 -0.57 5.95 -91.77 -0.55 -1.11 16 6 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 7 C 0.04 0.34 6.79 -35.40 -0.24 0.10 16 8 C -0.21 -1.84 10.76 -39.90 -0.43 -2.27 16 9 C -0.16 -1.62 10.21 -38.90 -0.40 -2.01 16 10 C 0.00 -0.04 7.04 -38.40 -0.27 -0.31 16 11 C 0.00 0.05 9.51 -39.23 -0.37 -0.33 16 12 C -0.19 -2.33 9.27 -39.25 -0.36 -2.69 16 13 C 0.55 8.73 7.56 -15.00 -0.11 8.61 16 14 O -0.56 -10.52 16.11 5.12 0.08 -10.44 16 15 N -0.70 -11.70 5.52 -64.43 -0.36 -12.06 16 16 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 17 C 0.43 9.81 7.85 -10.98 -0.09 9.72 16 18 O -0.60 -15.25 15.24 5.55 0.08 -15.17 16 19 N -0.55 -13.62 5.29 -10.96 -0.06 -13.67 16 20 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.03 0.67 5.50 -17.46 -0.10 0.58 16 23 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 24 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 O -0.16 -1.84 10.35 4.71 0.05 -1.79 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.20 7.90 -51.93 -0.41 -0.21 16 32 H 0.10 0.73 7.94 -51.93 -0.41 0.32 16 33 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.16 1.26 7.15 -52.49 -0.38 0.89 16 36 H 0.14 1.79 7.46 -52.48 -0.39 1.40 16 37 H 0.13 1.30 6.75 -52.49 -0.35 0.94 16 38 H 0.41 6.65 7.39 -40.82 -0.30 6.35 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.40 9.45 7.90 -40.82 -0.32 9.12 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -32.10 371.72 -7.88 -39.99 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -5.46 Total: 14.14 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -3.53 Total: 1.05 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.31 Total: -48.88 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: 0.22 Total: -27.39 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.10 -7.88 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492794718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.336 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds