Wall clock time and date at job start Tue Mar 31 2020 12:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 115.56200 * 2 1 4 4 C 1.53000 * 117.50105 * 214.30404 * 2 1 3 5 5 C 1.53000 * 60.00108 * 252.51610 * 4 2 1 6 6 H 1.08997 * 117.49723 * 107.51665 * 5 4 2 7 7 C 1.50706 * 117.49444 * 252.51078 * 5 4 2 8 8 C 1.35156 * 125.47693 * 188.60742 * 7 5 4 9 9 C 1.40320 * 107.20278 * 179.97438 * 8 7 5 10 10 C 1.37952 * 106.52549 * 0.02562 * 9 8 7 11 11 C 1.41609 * 126.10209 * 180.02562 * 10 9 8 12 12 C 1.35626 * 119.99632 * 359.97438 * 11 10 9 13 13 C 1.41553 * 119.99874 * 180.02562 * 12 11 10 14 14 O 1.21782 * 119.99516 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00422 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00208 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47159 * 179.97438 * 16 15 13 18 18 O 1.21294 * 119.99892 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99808 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99467 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00617 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99846 * 180.02562 * 20 19 17 23 23 N 1.31419 * 119.99715 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00274 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46962 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46927 * 120.00111 * 24 22 20 27 27 H 1.48491 * 109.47275 * 240.00187 * 24 22 20 28 28 O 1.34009 * 125.48361 * 8.30670 * 7 5 4 29 29 H 1.09000 * 109.47472 * 274.31024 * 1 2 3 30 30 H 1.09000 * 109.46705 * 34.31741 * 1 2 3 31 31 H 1.09002 * 109.46933 * 154.30964 * 1 2 3 32 32 H 1.08999 * 117.49784 * 145.02264 * 4 2 1 33 33 H 1.09004 * 117.51820 * 359.97438 * 4 2 1 34 34 H 1.07993 * 126.40286 * 359.95916 * 8 7 5 35 35 H 1.07994 * 126.73488 * 179.97438 * 9 8 7 36 36 H 1.08003 * 119.99976 * 179.97438 * 11 10 9 37 37 H 1.07993 * 120.00471 * 0.02562 * 12 11 10 38 38 H 0.97002 * 119.99902 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.47097 * 300.00084 * 16 15 13 40 40 H 1.08996 * 109.47630 * 59.99816 * 16 15 13 41 41 H 0.96994 * 120.00145 * 0.02562 * 19 17 16 42 42 H 0.97001 * 119.99253 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7648 5 6 2.2364 -1.1210 0.7652 6 1 1.6115 -1.8587 1.2684 7 6 3.5293 -0.7810 1.4610 8 6 3.7581 -0.8911 2.7885 9 6 5.0789 -0.4764 3.0177 10 6 5.5990 -0.1261 1.7890 11 6 6.9092 0.3518 1.5431 12 6 7.7806 0.5011 2.5715 13 6 9.0901 0.9793 2.3258 14 8 9.4342 1.2562 1.1909 15 7 9.9564 1.1272 3.3476 16 6 11.3117 1.6216 3.0932 17 6 12.0718 1.6949 4.3924 18 8 11.5344 1.3660 5.4289 19 7 13.3491 2.1249 4.4025 20 6 14.0403 2.1921 5.5845 21 1 13.5616 1.9000 6.5075 22 6 15.3570 2.6359 5.5951 23 7 15.9395 2.9918 4.4721 24 14 16.2993 2.7268 7.2055 25 1 15.4249 2.2732 8.3169 26 1 17.4961 1.8510 7.1288 27 1 16.7259 4.1277 7.4510 28 8 4.6387 -0.3264 0.8624 29 1 -0.3634 0.0772 1.0247 30 1 -0.3633 0.8488 -0.5794 31 1 -0.3633 -0.9261 -0.4455 32 1 3.1716 -0.8753 -1.2681 33 1 1.6116 -1.8591 -1.2678 34 1 3.0556 -1.2339 3.5337 35 1 5.5879 -0.4381 3.9694 36 1 7.2143 0.5974 0.5366 37 1 7.4756 0.2551 3.5778 38 1 9.6824 0.9063 4.2515 39 1 11.8235 0.9436 2.4101 40 1 11.2585 2.6147 2.6473 41 1 13.7790 2.3876 3.5736 42 1 16.8585 3.3020 4.4796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492794718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:12 Heat of formation + Delta-G solvation = -44.116259 kcal Electronic energy + Delta-G solvation = -24133.777263 eV Core-core repulsion = 20273.685513 eV Total energy + Delta-G solvation = -3860.091750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.68469 -41.14920 -39.97200 -38.73206 -36.29386 -35.64129 -35.26812 -33.87004 -33.37768 -30.88355 -29.67386 -28.49821 -26.68817 -25.35462 -23.07781 -22.85618 -21.72700 -21.40884 -21.19177 -20.56383 -19.99552 -18.79683 -18.01369 -17.32163 -17.22719 -17.02633 -16.73686 -16.49795 -16.03412 -15.70720 -15.46427 -15.42498 -14.86606 -14.66191 -14.36031 -13.96210 -13.95186 -13.89390 -13.63730 -13.55048 -13.16504 -12.91666 -12.86117 -12.76521 -12.44593 -12.41865 -12.10880 -11.91741 -11.58090 -11.48247 -11.23187 -11.06053 -10.66356 -10.56623 -10.22224 -10.08578 -8.85821 -8.51321 -6.01573 -0.66952 0.96711 1.35256 1.43217 1.57045 1.60338 1.64212 1.89914 2.16427 2.36735 2.37297 2.82824 3.13208 3.15987 3.35953 3.66823 3.79689 3.84629 3.93695 3.95536 4.13176 4.24614 4.27692 4.37869 4.43110 4.44784 4.61330 4.71134 4.82446 4.86897 4.93363 4.96997 4.98830 5.08650 5.17143 5.20871 5.28444 5.38695 5.39580 5.46139 5.91681 6.03253 6.45506 6.52739 7.03252 7.13168 7.43954 7.93916 8.65800 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.046891 B = 0.001631 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.982384 B =17163.185115 C =17575.523895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 H 0.093 0.907 4 C -0.166 4.166 5 C -0.092 4.092 6 H 0.161 0.839 7 C 0.036 3.964 8 C -0.214 4.214 9 C -0.149 4.149 10 C -0.039 4.039 11 C 0.024 3.976 12 C -0.203 4.203 13 C 0.550 3.450 14 O -0.591 6.591 15 N -0.701 5.701 16 C 0.120 3.880 17 C 0.433 3.567 18 O -0.623 6.623 19 N -0.559 5.559 20 C -0.338 4.338 21 H 0.087 0.913 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.271 1.271 28 O -0.180 6.180 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.416 0.584 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.399 0.601 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.457 -8.130 -7.751 31.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.154 4.154 3 H 0.111 0.889 4 C -0.203 4.203 5 C -0.110 4.110 6 H 0.178 0.822 7 C -0.015 4.015 8 C -0.232 4.232 9 C -0.168 4.168 10 C -0.087 4.087 11 C 0.004 3.996 12 C -0.224 4.224 13 C 0.342 3.658 14 O -0.475 6.475 15 N -0.354 5.354 16 C -0.007 4.007 17 C 0.220 3.780 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.467 4.467 21 H 0.105 0.895 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.197 1.197 27 H -0.197 1.197 28 O -0.077 6.077 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.197 0.803 35 H 0.195 0.805 36 H 0.150 0.850 37 H 0.176 0.824 38 H 0.255 0.745 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.233 0.767 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.280 -8.012 -8.177 31.438 hybrid contribution 1.206 0.295 0.671 1.412 sum -28.074 -7.716 -7.506 30.067 Atomic orbital electron populations 1.21407 0.90251 1.03194 1.02896 1.22566 0.96828 0.93884 1.02146 0.88917 1.23279 1.03001 1.01995 0.92022 1.20940 0.90940 1.04361 0.94744 0.82152 1.22319 0.87121 0.99716 0.92380 1.21805 0.97751 1.08028 0.95634 1.22779 0.95591 1.00226 0.98254 1.19736 0.90435 1.10746 0.87814 1.20111 0.87906 0.91183 1.00402 1.21690 0.92497 1.06801 1.01398 1.17265 0.86383 0.78106 0.84045 1.90814 1.80052 1.53557 1.23079 1.45615 1.11956 1.65971 1.11862 1.20783 0.83524 1.01843 0.94598 1.20416 0.83232 0.83567 0.90808 1.90470 1.69353 1.56036 1.35279 1.41849 1.10579 1.56673 1.10370 1.19795 0.95418 1.43648 0.87844 0.89507 1.26137 0.97207 0.95562 1.02192 1.69693 1.14706 1.43401 1.27824 0.84799 0.77735 0.78294 0.77067 1.19387 1.19662 1.19653 1.83984 1.20347 1.65654 1.37715 0.91217 0.91379 0.91008 0.89624 0.85686 0.80277 0.80479 0.85045 0.82351 0.74530 0.88723 0.88735 0.76705 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.19 71.98 0.73 0.01 16 2 C -0.14 -1.42 6.11 -10.79 -0.07 -1.49 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.17 -1.78 9.81 30.59 0.30 -1.48 16 5 C -0.09 -1.03 5.95 -11.54 -0.07 -1.10 16 6 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 7 C 0.04 0.62 6.79 24.98 0.17 0.79 16 8 C -0.21 -3.32 10.76 22.07 0.24 -3.08 16 9 C -0.15 -2.67 10.21 22.71 0.23 -2.44 16 10 C -0.04 -0.86 7.04 23.03 0.16 -0.70 16 11 C 0.02 0.59 9.51 22.50 0.21 0.80 16 12 C -0.20 -4.93 9.27 22.48 0.21 -4.72 16 13 C 0.55 17.53 7.56 85.06 0.64 18.18 16 14 O -0.59 -22.65 16.11 -4.61 -0.07 -22.73 16 15 N -0.70 -23.25 5.52 -475.94 -2.63 -25.87 16 16 C 0.12 4.46 6.15 85.64 0.53 4.98 16 17 C 0.43 20.05 7.85 87.66 0.69 20.74 16 18 O -0.62 -32.16 15.24 -3.07 -0.05 -32.21 16 19 N -0.56 -28.21 5.29 -306.98 -1.62 -29.83 16 20 C -0.34 -18.66 9.68 84.04 0.81 -17.84 16 21 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 23 N -0.92 -48.79 13.05 21.67 0.28 -48.51 16 24 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 O -0.18 -4.04 10.35 -6.08 -0.06 -4.10 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.28 7.90 -2.39 -0.02 0.26 16 32 H 0.09 1.21 7.94 -2.39 -0.02 1.20 16 33 H 0.12 0.81 8.05 -2.38 -0.02 0.79 16 34 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.18 2.35 7.15 -2.91 -0.02 2.33 16 36 H 0.13 3.42 7.46 -2.91 -0.02 3.39 16 37 H 0.16 2.87 6.75 -2.91 -0.02 2.85 16 38 H 0.42 13.26 7.39 -92.71 -0.69 12.57 16 39 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 42 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -69.24 371.72 2.79 -66.45 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -0.35 Total: 40.41 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.26 Total: 12.57 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -3.97 Total: -104.21 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -0.18 Total: -59.03 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.24 2.79 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492794718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.335 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds