Wall clock time and date at job start Tue Mar 31 2020 12:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.47249 * 180.02562 * 16 14 12 18 18 C 1.45969 * 118.97281 * 89.99929 * 17 16 14 19 19 C 1.50522 * 110.34485 * 162.79357 * 18 17 16 20 20 C 1.38288 * 119.72953 * 196.89822 * 19 18 17 21 21 C 1.38197 * 120.13188 * 180.02562 * 20 19 18 22 22 C 1.38283 * 120.06306 * 359.97438 * 21 20 19 23 23 C 1.38071 * 120.03185 * 0.02562 * 22 21 20 24 24 C 1.38565 * 120.34004 * 16.91967 * 19 18 17 25 25 O 1.35623 * 120.55847 * 359.95605 * 24 19 18 26 26 C 1.33870 * 118.77366 * 340.89691 * 25 24 19 27 27 O 1.21521 * 118.67822 * 199.55565 * 26 25 24 28 28 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 29 29 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 30 30 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 31 31 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 33 33 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 34 34 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 35 35 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 36 36 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 37 37 H 1.09003 * 109.32447 * 283.05972 * 18 17 16 38 38 H 1.09003 * 109.32200 * 42.69908 * 18 17 16 39 39 H 1.07999 * 119.92936 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.96756 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.98662 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.98416 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 7 4.1103 0.1744 -4.1106 18 6 5.5457 0.2502 -3.8564 19 6 6.2485 0.9054 -5.0150 20 6 7.6180 0.7700 -5.1518 21 6 8.2718 1.3685 -6.2121 22 6 7.5577 2.1044 -7.1399 23 6 6.1903 2.2426 -7.0079 24 6 5.5305 1.6425 -5.9430 25 8 4.1871 1.7832 -5.8214 26 6 3.5153 0.9164 -5.0537 27 8 2.3163 0.8019 -5.2152 28 1 -0.3634 -1.0229 0.0993 29 1 -0.3634 0.5974 0.8361 30 1 -0.3633 0.4254 -0.9355 31 1 2.9613 -0.1040 4.2479 32 1 0.7377 -2.1445 -1.9992 33 1 2.4630 -2.5819 -1.9862 34 1 1.5296 -2.5969 -0.4706 35 1 3.9019 -1.6023 -3.0164 36 1 2.4486 -1.0893 -3.9068 37 1 5.7216 0.8324 -2.9518 38 1 5.9415 -0.7563 -3.7201 39 1 8.1777 0.1961 -4.4281 40 1 9.3413 1.2607 -6.3166 41 1 8.0700 2.5719 -7.9678 42 1 5.6335 2.8178 -7.7327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496609168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:03 Heat of formation + Delta-G solvation = -57.016560 kcal Electronic energy + Delta-G solvation = -26968.909590 eV Core-core repulsion = 23108.258441 eV Total energy + Delta-G solvation = -3860.651149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04371 -39.57412 -38.88003 -37.41618 -36.10347 -35.28606 -32.81814 -32.15622 -30.69732 -30.53394 -28.07971 -26.42705 -26.18066 -25.26640 -24.04706 -23.01529 -21.26957 -20.10345 -19.09470 -18.43503 -17.59919 -17.36920 -16.97973 -16.29103 -15.88325 -15.75346 -15.48995 -14.84904 -14.78779 -14.46063 -14.23983 -14.02291 -13.81376 -13.57124 -13.31012 -12.82282 -12.74263 -12.45187 -12.33921 -12.12882 -11.94165 -11.84837 -11.68915 -11.55706 -11.36242 -11.08578 -10.72958 -10.58584 -10.45142 -9.82964 -9.81273 -9.30194 -9.24186 -8.89986 -8.66014 -8.57059 -7.72612 -6.20831 -4.23216 0.77935 0.89106 2.14017 2.48521 3.05801 3.19790 3.29687 3.32025 3.36577 3.44499 3.81471 4.08646 4.35573 4.35774 4.56809 4.79045 4.87978 4.92088 5.00811 5.07058 5.18594 5.22521 5.35676 5.41813 5.54822 5.61928 5.72251 5.77368 5.94288 5.95372 6.05829 6.21685 6.24633 6.32390 6.42163 6.49957 6.58487 6.92570 7.05488 7.43157 7.57402 7.60352 7.82533 8.07651 8.44918 8.79266 8.85363 9.41963 10.90818 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.003545 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.928002 B = 7896.583774 C = 8427.540347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.224 3.776 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.892 5.892 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.263 1.263 11 H -0.287 1.287 12 N -0.585 5.585 13 C 0.079 3.921 14 C 0.489 3.511 15 O -0.548 6.548 16 C 0.107 3.893 17 N -0.595 5.595 18 C 0.153 3.847 19 C -0.157 4.157 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.126 4.126 24 C 0.112 3.888 25 O -0.268 6.268 26 C 0.665 3.335 27 O -0.511 6.511 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.267 0.733 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.400 -1.278 -19.601 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.123 3.877 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.701 3.299 9 H -0.197 1.197 10 H -0.188 1.188 11 H -0.213 1.213 12 N -0.317 5.317 13 C -0.064 4.064 14 C 0.274 3.726 15 O -0.426 6.426 16 C -0.018 4.018 17 N -0.339 5.339 18 C 0.031 3.969 19 C -0.159 4.159 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.145 4.145 24 C 0.069 3.931 25 O -0.176 6.176 26 C 0.418 3.582 27 O -0.393 6.393 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.877 -0.496 -19.517 21.879 hybrid contribution 0.095 0.862 0.378 0.946 sum 9.972 0.366 -19.138 21.584 Atomic orbital electron populations 1.22214 0.98208 1.00949 0.99218 1.19307 0.90881 0.94868 0.82638 0.91922 1.21113 1.44735 0.95669 0.94794 0.90280 1.24941 0.93690 0.98464 0.95259 1.69885 1.44741 1.36087 1.02124 0.86903 0.79928 0.86077 0.76986 1.19731 1.18803 1.21336 1.48319 1.48835 1.11761 1.22809 1.21691 0.99093 0.82873 1.02788 1.20743 0.79837 0.87576 0.84425 1.90655 1.58444 1.16992 1.76507 1.21514 0.97205 0.91197 0.91914 1.46653 1.08577 1.42901 1.35722 1.20379 0.78153 1.02120 0.96259 1.19977 0.95559 1.02734 0.97585 1.20800 0.91965 0.98705 0.97985 1.21158 1.00436 0.98697 0.95005 1.21035 0.92708 0.97749 0.99104 1.20641 0.94716 1.02281 0.96824 1.18586 0.80482 0.98447 0.95564 1.84335 1.19188 1.50748 1.63305 1.17535 0.84969 0.77179 0.78478 1.91030 1.10690 1.65986 1.71632 0.93081 0.92638 0.95380 0.92358 0.93440 0.92580 0.89671 0.86887 0.86484 0.88779 0.88441 0.84610 0.85056 0.84700 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.09 37.16 0.34 -2.83 16 2 C 0.22 5.39 2.27 -69.08 -0.16 5.23 16 3 H 0.06 1.68 4.11 -51.93 -0.21 1.47 16 4 C -0.53 -14.14 8.72 -34.44 -0.30 -14.44 16 5 H 0.08 2.22 6.82 -52.49 -0.36 1.86 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 8 Si 0.87 22.25 26.91 -169.99 -4.57 17.67 16 9 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.26 -6.57 6.73 56.52 0.38 -6.19 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 N -0.59 -11.95 2.75 -175.26 -0.48 -12.43 16 13 C 0.08 1.22 9.40 59.85 0.56 1.78 16 14 C 0.49 9.88 7.74 -10.99 -0.09 9.79 16 15 O -0.55 -13.41 15.76 5.56 0.09 -13.33 16 16 C 0.11 1.57 4.36 -5.20 -0.02 1.54 16 17 N -0.60 -9.03 2.32 -183.29 -0.43 -9.46 16 18 C 0.15 1.83 6.43 -5.57 -0.04 1.79 16 19 C -0.16 -1.76 5.83 -104.57 -0.61 -2.37 16 20 C -0.08 -0.63 9.72 -39.58 -0.38 -1.01 16 21 C -0.13 -0.96 10.04 -39.58 -0.40 -1.35 16 22 C -0.09 -0.65 10.04 -39.63 -0.40 -1.05 16 23 C -0.13 -1.24 9.97 -39.40 -0.39 -1.63 16 24 C 0.11 1.43 6.57 -39.22 -0.26 1.17 16 25 O -0.27 -4.31 9.97 -21.72 -0.22 -4.53 16 26 C 0.66 11.69 8.41 53.68 0.45 12.14 16 27 O -0.51 -10.41 16.50 -19.42 -0.32 -10.73 16 28 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 29 H 0.05 1.21 7.97 -51.93 -0.41 0.79 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.66 6.44 -51.93 -0.33 0.32 16 34 H 0.08 1.43 6.56 -51.93 -0.34 1.08 16 35 H 0.11 1.21 7.21 -51.93 -0.37 0.84 16 36 H 0.12 1.62 7.23 -51.93 -0.38 1.24 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.10 0.83 8.02 -51.93 -0.42 0.42 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -36.35 350.39 -7.02 -43.37 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.35 Total: -1.18 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -1.79 Total: 10.95 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.13 Total: -47.50 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.45 Total: -28.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.57 Total: 17.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.35 -7.02 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496609168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.650 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds