Wall clock time and date at job start Tue Mar 31 2020 12:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.47249 * 180.02562 * 16 14 12 18 18 C 1.45969 * 118.97281 * 89.99929 * 17 16 14 19 19 C 1.50522 * 110.34485 * 162.79357 * 18 17 16 20 20 C 1.38288 * 119.72953 * 196.89822 * 19 18 17 21 21 C 1.38197 * 120.13188 * 180.02562 * 20 19 18 22 22 C 1.38283 * 120.06306 * 359.97438 * 21 20 19 23 23 C 1.38071 * 120.03185 * 0.02562 * 22 21 20 24 24 C 1.38565 * 120.34004 * 16.91967 * 19 18 17 25 25 O 1.35623 * 120.55847 * 359.95605 * 24 19 18 26 26 C 1.33870 * 118.77366 * 340.89691 * 25 24 19 27 27 O 1.21521 * 118.67822 * 199.55565 * 26 25 24 28 28 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 29 29 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 30 30 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 31 31 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 33 33 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 34 34 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 35 35 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 36 36 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 37 37 H 1.09003 * 109.32447 * 283.05972 * 18 17 16 38 38 H 1.09003 * 109.32200 * 42.69908 * 18 17 16 39 39 H 1.07999 * 119.92936 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.96756 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.98662 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.98416 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 7 4.1103 0.1744 -4.1106 18 6 5.5457 0.2502 -3.8564 19 6 6.2485 0.9054 -5.0150 20 6 7.6180 0.7700 -5.1518 21 6 8.2718 1.3685 -6.2121 22 6 7.5577 2.1044 -7.1399 23 6 6.1903 2.2426 -7.0079 24 6 5.5305 1.6425 -5.9430 25 8 4.1871 1.7832 -5.8214 26 6 3.5153 0.9164 -5.0537 27 8 2.3163 0.8019 -5.2152 28 1 -0.3634 -1.0229 0.0993 29 1 -0.3634 0.5974 0.8361 30 1 -0.3633 0.4254 -0.9355 31 1 2.9613 -0.1040 4.2479 32 1 0.7377 -2.1445 -1.9992 33 1 2.4630 -2.5819 -1.9862 34 1 1.5296 -2.5969 -0.4706 35 1 3.9019 -1.6023 -3.0164 36 1 2.4486 -1.0893 -3.9068 37 1 5.7216 0.8324 -2.9518 38 1 5.9415 -0.7563 -3.7201 39 1 8.1777 0.1961 -4.4281 40 1 9.3413 1.2607 -6.3166 41 1 8.0700 2.5719 -7.9678 42 1 5.6335 2.8178 -7.7327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496609168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:02 Heat of formation + Delta-G solvation = -81.284014 kcal Electronic energy + Delta-G solvation = -26969.961906 eV Core-core repulsion = 23108.258441 eV Total energy + Delta-G solvation = -3861.703465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.10744 -40.96590 -39.96648 -38.54598 -37.42763 -36.83318 -34.76664 -33.16570 -32.28627 -31.36747 -29.24981 -27.62448 -27.39174 -27.26366 -25.09012 -23.81390 -22.83324 -21.01202 -20.41860 -19.79480 -19.30647 -18.65586 -18.33883 -17.74794 -17.15534 -16.89986 -16.53495 -16.24819 -16.06634 -15.65374 -15.45038 -15.16675 -14.84683 -14.73776 -14.57032 -14.24159 -14.17751 -14.07144 -13.97995 -13.35792 -13.17821 -13.04043 -12.91700 -12.81088 -12.67624 -12.61760 -12.39834 -12.31170 -11.85003 -11.71066 -11.33257 -11.17499 -10.83120 -10.23411 -9.88799 -9.50454 -9.38184 -8.39325 -6.41985 0.03076 0.21659 1.04739 1.23008 1.26787 1.29073 1.38542 1.67490 2.03469 2.24394 2.32294 2.63087 3.02419 3.27400 3.60889 3.63806 3.77166 4.07469 4.18285 4.21134 4.31307 4.36812 4.42273 4.45069 4.47224 4.51802 4.66767 4.70462 4.78242 4.83644 4.91028 5.00473 5.03592 5.13722 5.21625 5.29717 5.38478 5.44741 5.51284 5.78135 5.82485 6.13304 6.45072 6.58468 6.63597 6.71791 7.21241 7.31749 8.75566 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018613 B = 0.003545 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.928002 B = 7896.583774 C = 8427.540347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.222 3.778 3 H 0.032 0.968 4 C -0.514 4.514 5 H 0.064 0.936 6 C 0.035 3.965 7 N -0.930 5.930 8 Si 0.919 3.081 9 H -0.286 1.286 10 H -0.260 1.260 11 H -0.276 1.276 12 N -0.593 5.593 13 C 0.073 3.927 14 C 0.479 3.521 15 O -0.601 6.601 16 C 0.116 3.884 17 N -0.592 5.592 18 C 0.148 3.852 19 C -0.170 4.170 20 C -0.075 4.075 21 C -0.124 4.124 22 C -0.081 4.081 23 C -0.135 4.135 24 C 0.065 3.935 25 O -0.287 6.287 26 C 0.658 3.342 27 O -0.555 6.555 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.269 0.731 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.163 0.837 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.544 -2.403 -21.583 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.120 3.880 3 H 0.050 0.950 4 C -0.553 4.553 5 H 0.082 0.918 6 C -0.165 4.165 7 N -0.569 5.569 8 Si 0.746 3.254 9 H -0.212 1.212 10 H -0.184 1.184 11 H -0.201 1.201 12 N -0.324 5.324 13 C -0.069 4.069 14 C 0.267 3.733 15 O -0.483 6.483 16 C -0.009 4.009 17 N -0.335 5.335 18 C 0.027 3.973 19 C -0.171 4.171 20 C -0.093 4.093 21 C -0.141 4.141 22 C -0.099 4.099 23 C -0.153 4.153 24 C 0.023 3.977 25 O -0.195 6.195 26 C 0.412 3.588 27 O -0.441 6.441 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.180 0.820 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.185 0.815 41 H 0.186 0.814 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.044 -1.652 -21.514 24.711 hybrid contribution -0.436 1.199 0.884 1.552 sum 11.608 -0.454 -20.631 23.677 Atomic orbital electron populations 1.22085 0.96213 1.02016 0.99531 1.19064 0.92351 0.93337 0.83272 0.94952 1.21323 1.43236 0.95065 0.95641 0.91821 1.25497 0.94248 1.01377 0.95362 1.69961 1.46915 1.37245 1.02799 0.86185 0.79200 0.82749 0.77287 1.21226 1.18448 1.20111 1.48275 1.48753 1.13685 1.21702 1.21986 1.01952 0.79977 1.02961 1.21735 0.78804 0.87206 0.85598 1.90628 1.60230 1.19520 1.77937 1.21640 0.98631 0.91430 0.89208 1.46794 1.09911 1.42140 1.34608 1.20622 0.76566 1.04251 0.95844 1.20071 0.96778 1.03135 0.97154 1.21177 0.90680 0.98593 0.98851 1.21655 1.02134 0.96707 0.93649 1.21477 0.91503 0.96988 0.99928 1.20926 0.96012 1.02126 0.96234 1.19111 0.79161 1.01409 0.97996 1.84247 1.21419 1.50502 1.63350 1.17772 0.84813 0.77218 0.78963 1.90967 1.12473 1.67602 1.73086 0.91382 0.93398 0.94225 0.92212 0.91145 0.88264 0.91230 0.81960 0.85257 0.90921 0.84379 0.81867 0.81500 0.81374 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.09 71.98 0.65 -5.26 16 2 C 0.22 10.72 2.27 44.25 0.10 10.82 16 3 H 0.03 1.77 4.11 -2.39 -0.01 1.76 16 4 C -0.51 -27.91 8.72 25.60 0.22 -27.69 16 5 H 0.06 3.60 6.82 -2.91 -0.02 3.58 16 6 C 0.04 2.01 5.47 84.66 0.46 2.48 16 7 N -0.93 -55.86 13.96 21.45 0.30 -55.57 16 8 Si 0.92 46.84 26.91 68.60 1.85 48.69 16 9 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 10 H -0.26 -12.95 6.73 99.48 0.67 -12.28 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 N -0.59 -23.65 2.75 -826.79 -2.28 -25.93 16 13 C 0.07 2.07 9.40 127.77 1.20 3.27 16 14 C 0.48 19.11 7.74 87.66 0.68 19.79 16 15 O -0.60 -30.20 15.76 -3.03 -0.05 -30.25 16 16 C 0.12 3.15 4.36 85.63 0.37 3.53 16 17 N -0.59 -17.57 2.32 -965.52 -2.24 -19.81 16 18 C 0.15 3.34 6.43 85.68 0.55 3.89 16 19 C -0.17 -3.57 5.83 -19.83 -0.12 -3.69 16 20 C -0.07 -0.99 9.72 22.27 0.22 -0.77 16 21 C -0.12 -1.22 10.04 22.27 0.22 -1.00 16 22 C -0.08 -0.93 10.04 22.24 0.22 -0.71 16 23 C -0.13 -2.49 9.97 22.39 0.22 -2.27 16 24 C 0.06 1.65 6.57 22.51 0.15 1.80 16 25 O -0.29 -9.65 9.97 11.68 0.12 -9.53 16 26 C 0.66 23.75 8.41 129.92 1.09 24.84 16 27 O -0.55 -23.38 16.50 19.90 0.33 -23.06 16 28 H 0.07 2.61 7.86 -2.38 -0.02 2.59 16 29 H 0.05 2.06 7.97 -2.39 -0.02 2.04 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 1.92 6.44 -2.38 -0.02 1.91 16 34 H 0.07 2.21 6.56 -2.38 -0.02 2.19 16 35 H 0.16 2.76 7.21 -2.39 -0.02 2.74 16 36 H 0.13 3.29 7.23 -2.39 -0.02 3.27 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.14 1.88 8.02 -2.39 -0.02 1.86 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 41 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -84.73 350.39 5.29 -79.44 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.01 Total: 7.00 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: 6.26 Total: 29.01 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.22 Total: -101.31 kcal Atomic # 8 Polarization: -63.23 SS G_CDS: 0.40 Total: -62.83 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.85 Total: 48.69 kcal Total: -84.73 5.29 -79.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496609168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.845 kcal (2) G-P(sol) polarization free energy of solvation -84.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds