Wall clock time and date at job start Tue Mar 31 2020 12:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.57380 * 2 1 4 4 O 1.45704 * 110.51985 * 237.29731 * 2 1 3 5 5 C 1.33770 * 109.47683 * 241.36645 * 4 2 1 6 6 O 1.21516 * 123.07465 * 179.97438 * 5 4 2 7 7 N 1.34009 * 113.85754 * 0.02562 * 5 4 2 8 8 C 1.47092 * 108.87880 * 359.97438 * 7 5 4 9 9 H 1.08996 * 110.56735 * 241.28253 * 8 7 5 10 10 C 1.50702 * 110.56355 * 118.57368 * 8 7 5 11 11 O 1.21283 * 120.00262 * 341.45651 * 10 8 7 12 12 N 1.34777 * 119.99928 * 161.17557 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09001 * 109.46948 * 35.00281 * 13 12 10 15 15 C 1.52999 * 109.47481 * 154.99940 * 13 12 10 16 16 C 1.50698 * 109.47141 * 295.00678 * 15 13 12 17 17 H 1.07994 * 120.00042 * 359.97438 * 16 15 13 18 18 C 1.37877 * 119.99710 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00499 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00045 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46891 * 59.99966 * 20 18 16 22 22 H 1.48496 * 109.47132 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46996 * 300.00451 * 20 18 16 24 24 C 1.50700 * 109.47514 * 275.00337 * 13 12 10 25 25 C 1.38235 * 119.99909 * 319.72923 * 24 13 12 26 26 C 1.38236 * 119.99779 * 179.80938 * 25 24 13 27 27 C 1.38230 * 120.00249 * 0.41194 * 26 25 24 28 28 C 1.38243 * 119.99898 * 359.81874 * 27 26 25 29 29 C 1.38234 * 119.99873 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47106 * 297.29290 * 1 2 3 31 31 H 1.08997 * 109.47650 * 57.29227 * 1 2 3 32 32 H 1.09001 * 109.47455 * 177.29395 * 1 2 3 33 33 H 0.97001 * 125.56208 * 179.97438 * 7 5 4 34 34 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 35 35 H 1.09006 * 109.46798 * 55.00299 * 15 13 12 36 36 H 1.08995 * 109.47322 * 174.99759 * 15 13 12 37 37 H 0.96993 * 120.00753 * 179.97438 * 19 18 16 38 38 H 1.08003 * 119.99755 * 359.97438 * 25 24 13 39 39 H 1.08003 * 119.99406 * 180.20352 * 26 25 24 40 40 H 1.07999 * 120.00009 * 179.79286 * 27 26 25 41 41 H 1.07992 * 119.99465 * 179.97438 * 28 27 26 42 42 H 1.07994 * 119.99956 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0204 0.0000 4 8 2.0407 -0.7373 -1.1483 5 6 2.7631 -1.7800 -0.7235 6 8 3.3049 -2.5629 -1.4784 7 7 2.8337 -1.8828 0.6108 8 6 2.0699 -0.7800 1.2142 9 1 2.7213 -0.1490 1.8188 10 6 0.9337 -1.3163 2.0464 11 8 0.5472 -2.4543 1.8836 12 7 0.3507 -0.5330 2.9754 13 6 -0.7499 -1.0562 3.7886 14 1 -0.5804 -2.1135 3.9923 15 6 -0.8187 -0.2871 5.1094 16 6 0.4299 -0.5519 5.9105 17 1 1.1957 -1.2039 5.5172 18 6 0.5946 0.0383 7.1456 19 7 -0.3382 0.8319 7.6249 20 14 2.1420 -0.2905 8.1391 21 1 3.3297 0.1553 7.3673 22 1 2.0752 0.4561 9.4210 23 1 2.2508 -1.7448 8.4190 24 6 -2.0487 -0.8905 3.0425 25 6 -2.2900 0.2651 2.3231 26 6 -3.4797 0.4154 1.6356 27 6 -4.4318 -0.5860 1.6743 28 6 -4.1925 -1.7395 2.3976 29 6 -3.0010 -1.8918 3.0817 30 1 -0.3633 0.4712 0.9133 31 1 -0.3634 0.5553 -0.8647 32 1 -0.3634 -1.0265 -0.0485 33 1 3.3106 -2.5721 1.0990 34 1 0.6596 0.3772 3.1056 35 1 -0.8992 0.7805 4.9043 36 1 -1.6903 -0.6149 5.6758 37 1 -0.2226 1.2468 8.4940 38 1 -1.5477 1.0492 2.2961 39 1 -3.6668 1.3169 1.0708 40 1 -5.3627 -0.4670 1.1398 41 1 -4.9365 -2.5217 2.4281 42 1 -2.8143 -2.7927 3.6470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497106209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:03 Heat of formation + Delta-G solvation = -84.166404 kcal Electronic energy + Delta-G solvation = -27387.305297 eV Core-core repulsion = 23525.476842 eV Total energy + Delta-G solvation = -3861.828455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00685 -39.77217 -38.55406 -37.26111 -35.50480 -34.64234 -33.03106 -32.30003 -31.07311 -30.62194 -28.93121 -27.09523 -25.09086 -23.33072 -22.45127 -22.40508 -22.07663 -20.62313 -19.93860 -18.33479 -17.70606 -17.02220 -16.68617 -16.29924 -16.11619 -15.53388 -15.37490 -14.90314 -14.76249 -14.64607 -14.41790 -14.00630 -13.70953 -13.38794 -13.17676 -13.08086 -12.71665 -12.61477 -12.21541 -12.14642 -11.79459 -11.68961 -11.25912 -11.05736 -10.95624 -10.84036 -10.76150 -10.74283 -10.59498 -10.21249 -9.92248 -9.47319 -9.23205 -8.71675 -8.63195 -8.56422 -8.31149 -6.20586 -4.25287 1.64445 1.67696 2.44247 2.59394 2.68224 3.13837 3.19232 3.26149 3.27979 3.55358 3.89086 4.09204 4.28972 4.44219 4.50698 4.73703 5.00887 5.10769 5.13653 5.15823 5.16940 5.24752 5.38828 5.50715 5.54533 5.76679 5.81202 5.97730 6.01651 6.21707 6.29426 6.42250 6.62381 6.64946 6.71407 6.74855 6.94625 7.11927 7.27449 7.34740 7.45583 7.74367 7.78419 7.99903 8.11846 8.38934 8.80209 9.40647 10.89598 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.005452 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.446267 B = 5134.370645 C = 7425.531764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 H 0.127 0.873 4 O -0.323 6.323 5 C 0.652 3.348 6 O -0.526 6.526 7 N -0.708 5.708 8 C 0.074 3.926 9 H 0.127 0.873 10 C 0.507 3.493 11 O -0.528 6.528 12 N -0.694 5.694 13 C 0.185 3.815 14 H 0.089 0.911 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.073 4.073 25 C -0.111 4.111 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.121 4.121 29 C -0.107 4.107 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.439 0.561 34 H 0.403 0.597 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 2.832 -11.182 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.028 3.972 3 H 0.145 0.855 4 O -0.233 6.233 5 C 0.404 3.596 6 O -0.411 6.411 7 N -0.380 5.380 8 C -0.037 4.037 9 H 0.144 0.856 10 C 0.290 3.710 11 O -0.404 6.404 12 N -0.344 5.344 13 C 0.081 3.919 14 H 0.107 0.893 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.074 4.074 25 C -0.129 4.129 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.139 4.139 29 C -0.126 4.126 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.283 0.717 34 H 0.238 0.762 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.768 1.913 -11.853 12.135 hybrid contribution 1.093 0.062 1.283 1.687 sum -0.674 1.975 -10.570 10.774 Atomic orbital electron populations 1.22476 0.91285 1.05080 1.04741 1.23831 0.97104 0.96042 0.80241 0.85501 1.87311 1.63785 1.39273 1.32932 1.18406 0.78069 0.80605 0.82495 1.91068 1.49675 1.42338 1.57990 1.45639 1.54659 1.31779 1.05917 1.22523 0.94647 0.90081 0.96403 0.85573 1.20207 0.83396 0.86544 0.80885 1.90740 1.63616 1.18150 1.67884 1.46019 1.35629 1.16587 1.36129 1.20312 0.80272 1.00671 0.90636 0.89349 1.19393 0.98392 0.95225 0.88263 1.21061 1.03733 1.29070 1.02477 0.92481 1.24977 0.96464 0.94962 0.97560 1.69931 1.33386 1.30575 1.18904 0.86663 0.83366 0.78517 0.79488 1.20255 1.21253 1.20219 1.20494 0.96828 0.93759 0.96346 1.20877 0.97094 0.97185 0.97744 1.21041 0.94253 0.98767 1.00079 1.21019 0.99159 0.94494 1.00411 1.21064 0.97170 0.97722 0.97919 1.21021 0.93686 0.98757 0.99105 0.88660 0.90248 0.90567 0.71702 0.76202 0.95595 0.94630 0.92682 0.86448 0.86619 0.86777 0.86574 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.45 37.16 0.31 -1.53 16 2 C 0.08 0.82 4.50 -26.16 -0.12 0.71 16 3 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 4 O -0.32 -4.36 10.80 -37.83 -0.41 -4.77 16 5 C 0.65 9.92 9.16 53.71 0.49 10.41 16 6 O -0.53 -9.84 18.04 -19.12 -0.34 -10.18 16 7 N -0.71 -8.90 5.66 -59.36 -0.34 -9.24 16 8 C 0.07 0.80 4.17 -68.19 -0.28 0.52 16 9 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 10 C 0.51 7.27 4.96 -10.98 -0.05 7.22 16 11 O -0.53 -9.69 16.03 5.55 0.09 -9.61 16 12 N -0.69 -9.97 3.11 -54.93 -0.17 -10.14 16 13 C 0.18 3.26 2.11 -69.08 -0.15 3.11 16 14 H 0.09 1.76 7.44 -51.93 -0.39 1.37 16 15 C 0.02 0.53 4.49 -27.88 -0.13 0.40 16 16 C -0.53 -12.71 8.84 -34.44 -0.30 -13.02 16 17 H 0.06 1.37 7.74 -52.49 -0.41 0.96 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 20 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C -0.07 -1.17 4.91 -104.62 -0.51 -1.69 16 25 C -0.11 -1.54 7.87 -39.58 -0.31 -1.85 16 26 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 27 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 28 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 29 C -0.11 -1.68 9.67 -39.58 -0.38 -2.06 16 30 H 0.10 0.92 3.96 -51.93 -0.21 0.72 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.03 7.39 -51.93 -0.38 0.65 16 33 H 0.44 5.06 8.96 -40.82 -0.37 4.69 16 34 H 0.40 4.99 8.60 -40.82 -0.35 4.64 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.12 1.43 6.61 -52.48 -0.35 1.08 16 39 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.83 8.04 -52.49 -0.42 1.41 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -32.50 354.46 -8.22 -40.72 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.39 Total: 8.78 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.73 Total: -2.35 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.23 Total: -42.71 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.66 Total: -24.56 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.50 -8.22 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497106209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.445 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds