Wall clock time and date at job start Tue Mar 31 2020 12:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.57380 * 2 1 4 4 O 1.45704 * 110.51985 * 237.29731 * 2 1 3 5 5 C 1.33770 * 109.47683 * 241.36645 * 4 2 1 6 6 O 1.21516 * 123.07465 * 179.97438 * 5 4 2 7 7 N 1.34009 * 113.85754 * 0.02562 * 5 4 2 8 8 C 1.47092 * 108.87880 * 359.97438 * 7 5 4 9 9 H 1.08996 * 110.56735 * 241.28253 * 8 7 5 10 10 C 1.50702 * 110.56355 * 118.57368 * 8 7 5 11 11 O 1.21283 * 120.00262 * 341.45651 * 10 8 7 12 12 N 1.34777 * 119.99928 * 161.17557 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09001 * 109.46948 * 35.00281 * 13 12 10 15 15 C 1.52999 * 109.47481 * 154.99940 * 13 12 10 16 16 C 1.50698 * 109.47141 * 295.00678 * 15 13 12 17 17 H 1.07994 * 120.00042 * 359.97438 * 16 15 13 18 18 C 1.37877 * 119.99710 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00499 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00045 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46891 * 59.99966 * 20 18 16 22 22 H 1.48496 * 109.47132 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46996 * 300.00451 * 20 18 16 24 24 C 1.50700 * 109.47514 * 275.00337 * 13 12 10 25 25 C 1.38235 * 119.99909 * 319.72923 * 24 13 12 26 26 C 1.38236 * 119.99779 * 179.80938 * 25 24 13 27 27 C 1.38230 * 120.00249 * 0.41194 * 26 25 24 28 28 C 1.38243 * 119.99898 * 359.81874 * 27 26 25 29 29 C 1.38234 * 119.99873 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47106 * 297.29290 * 1 2 3 31 31 H 1.08997 * 109.47650 * 57.29227 * 1 2 3 32 32 H 1.09001 * 109.47455 * 177.29395 * 1 2 3 33 33 H 0.97001 * 125.56208 * 179.97438 * 7 5 4 34 34 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 35 35 H 1.09006 * 109.46798 * 55.00299 * 15 13 12 36 36 H 1.08995 * 109.47322 * 174.99759 * 15 13 12 37 37 H 0.96993 * 120.00753 * 179.97438 * 19 18 16 38 38 H 1.08003 * 119.99755 * 359.97438 * 25 24 13 39 39 H 1.08003 * 119.99406 * 180.20352 * 26 25 24 40 40 H 1.07999 * 120.00009 * 179.79286 * 27 26 25 41 41 H 1.07992 * 119.99465 * 179.97438 * 28 27 26 42 42 H 1.07994 * 119.99956 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0204 0.0000 4 8 2.0407 -0.7373 -1.1483 5 6 2.7631 -1.7800 -0.7235 6 8 3.3049 -2.5629 -1.4784 7 7 2.8337 -1.8828 0.6108 8 6 2.0699 -0.7800 1.2142 9 1 2.7213 -0.1490 1.8188 10 6 0.9337 -1.3163 2.0464 11 8 0.5472 -2.4543 1.8836 12 7 0.3507 -0.5330 2.9754 13 6 -0.7499 -1.0562 3.7886 14 1 -0.5804 -2.1135 3.9923 15 6 -0.8187 -0.2871 5.1094 16 6 0.4299 -0.5519 5.9105 17 1 1.1957 -1.2039 5.5172 18 6 0.5946 0.0383 7.1456 19 7 -0.3382 0.8319 7.6249 20 14 2.1420 -0.2905 8.1391 21 1 3.3297 0.1553 7.3673 22 1 2.0752 0.4561 9.4210 23 1 2.2508 -1.7448 8.4190 24 6 -2.0487 -0.8905 3.0425 25 6 -2.2900 0.2651 2.3231 26 6 -3.4797 0.4154 1.6356 27 6 -4.4318 -0.5860 1.6743 28 6 -4.1925 -1.7395 2.3976 29 6 -3.0010 -1.8918 3.0817 30 1 -0.3633 0.4712 0.9133 31 1 -0.3634 0.5553 -0.8647 32 1 -0.3634 -1.0265 -0.0485 33 1 3.3106 -2.5721 1.0990 34 1 0.6596 0.3772 3.1056 35 1 -0.8992 0.7805 4.9043 36 1 -1.6903 -0.6149 5.6758 37 1 -0.2226 1.2468 8.4940 38 1 -1.5477 1.0492 2.2961 39 1 -3.6668 1.3169 1.0708 40 1 -5.3627 -0.4670 1.1398 41 1 -4.9365 -2.5217 2.4281 42 1 -2.8143 -2.7927 3.6470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497106209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:02 Heat of formation + Delta-G solvation = -106.916743 kcal Electronic energy + Delta-G solvation = -27388.291825 eV Core-core repulsion = 23525.476842 eV Total energy + Delta-G solvation = -3862.814983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.04969 -40.98597 -39.69531 -38.45463 -36.86806 -35.72722 -34.76269 -33.44955 -32.19507 -31.69337 -30.48161 -28.13637 -26.62105 -24.40672 -23.73894 -23.47784 -23.31969 -21.84004 -21.17754 -19.32751 -18.93279 -18.49540 -17.87913 -17.60164 -17.29736 -16.80585 -16.53431 -16.34100 -16.00243 -15.82357 -15.50576 -15.10578 -14.81960 -14.56680 -14.41878 -14.21758 -14.07247 -13.79462 -13.58473 -13.44898 -13.08744 -12.87993 -12.63889 -12.60057 -12.42244 -12.12937 -12.03281 -11.92106 -11.80701 -11.56391 -11.43145 -11.30274 -10.56817 -10.34461 -10.00507 -9.70979 -9.48273 -8.16803 -6.26502 0.53845 0.59407 1.33202 1.42950 1.46127 1.48237 1.52163 1.62286 2.07750 2.42595 2.54125 2.98993 3.01311 3.18108 3.45833 3.71942 3.86096 4.01904 4.06215 4.20274 4.23120 4.25734 4.34668 4.48004 4.66412 4.71435 4.75361 4.79613 4.82984 5.14582 5.15884 5.24407 5.27619 5.47905 5.61491 5.62303 5.64347 5.68786 5.81816 5.91053 6.07539 6.19206 6.23651 6.60023 6.86899 6.88746 7.24318 7.42915 8.93273 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.005452 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.446267 B = 5134.370645 C = 7425.531764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.085 3.915 3 H 0.181 0.819 4 O -0.331 6.331 5 C 0.650 3.350 6 O -0.571 6.571 7 N -0.701 5.701 8 C 0.079 3.921 9 H 0.172 0.828 10 C 0.509 3.491 11 O -0.573 6.573 12 N -0.685 5.685 13 C 0.203 3.797 14 H 0.056 0.944 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.014 3.986 19 N -0.925 5.925 20 Si 0.950 3.050 21 H -0.261 1.261 22 H -0.289 1.289 23 H -0.281 1.281 24 C -0.096 4.096 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.131 4.131 28 C -0.128 4.128 29 C -0.136 4.136 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.037 0.963 33 H 0.443 0.557 34 H 0.416 0.584 35 H 0.021 0.979 36 H 0.000 1.000 37 H 0.263 0.737 38 H 0.135 0.865 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.135 0.865 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 5.030 -12.312 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 H 0.198 0.802 4 O -0.241 6.241 5 C 0.403 3.597 6 O -0.459 6.459 7 N -0.372 5.372 8 C -0.031 4.031 9 H 0.189 0.811 10 C 0.294 3.706 11 O -0.452 6.452 12 N -0.335 5.335 13 C 0.098 3.902 14 H 0.074 0.926 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.185 4.185 19 N -0.565 5.565 20 Si 0.776 3.224 21 H -0.185 1.185 22 H -0.215 1.215 23 H -0.206 1.206 24 C -0.098 4.098 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.154 4.154 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.287 0.713 34 H 0.253 0.747 35 H 0.039 0.961 36 H 0.018 0.982 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.371 4.147 -12.971 13.687 hybrid contribution 0.836 -0.631 1.643 1.948 sum -0.535 3.516 -11.328 11.874 Atomic orbital electron populations 1.22457 0.91799 1.03022 1.06004 1.24327 0.96780 0.97687 0.78228 0.80160 1.87292 1.63373 1.38924 1.34516 1.18508 0.77815 0.80542 0.82807 1.91025 1.51645 1.44074 1.59170 1.45660 1.54038 1.32258 1.05261 1.22790 0.93655 0.89780 0.96841 0.81077 1.20794 0.83593 0.85752 0.80481 1.90731 1.65030 1.20295 1.69115 1.45812 1.34908 1.17141 1.35669 1.19704 0.82589 0.98077 0.89847 0.92582 1.19141 0.95946 0.95137 0.89769 1.21379 1.04331 1.28132 1.02708 0.92457 1.25706 0.99084 0.94946 0.98733 1.70047 1.35205 1.31931 1.19289 0.85730 0.80671 0.77862 0.78111 1.18531 1.21480 1.20643 1.20398 0.96137 0.95321 0.97900 1.21101 0.98325 0.96579 0.97261 1.21460 0.93296 0.99842 0.99311 1.21452 1.00316 0.93656 0.99488 1.21337 0.96662 0.99015 0.97545 1.21145 0.95098 0.98780 1.00403 0.87923 0.88278 0.94331 0.71331 0.74693 0.96108 0.98201 0.92845 0.84702 0.83252 0.83670 0.84692 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.45 71.98 0.61 -2.56 16 2 C 0.08 1.36 4.50 30.96 0.14 1.50 16 3 H 0.18 1.10 8.14 -2.39 -0.02 1.08 16 4 O -0.33 -8.28 10.80 -47.31 -0.51 -8.79 16 5 C 0.65 19.25 9.16 129.91 1.19 20.44 16 6 O -0.57 -21.55 18.04 19.63 0.35 -21.19 16 7 N -0.70 -16.70 5.66 -573.41 -3.24 -19.94 16 8 C 0.08 1.49 4.17 44.50 0.19 1.68 16 9 H 0.17 1.82 8.14 -2.39 -0.02 1.80 16 10 C 0.51 14.14 4.96 87.66 0.43 14.58 16 11 O -0.57 -21.50 16.03 -3.04 -0.05 -21.55 16 12 N -0.68 -19.09 3.11 -446.09 -1.39 -20.48 16 13 C 0.20 7.36 2.11 44.25 0.09 7.45 16 14 H 0.06 2.38 7.44 -2.39 -0.02 2.36 16 15 C 0.04 1.66 4.49 29.85 0.13 1.80 16 16 C -0.53 -25.75 8.84 25.60 0.23 -25.53 16 17 H 0.06 2.75 7.74 -2.91 -0.02 2.72 16 18 C 0.01 0.73 5.46 84.65 0.46 1.19 16 19 N -0.92 -50.63 13.29 21.45 0.28 -50.34 16 20 Si 0.95 40.31 29.54 68.60 2.03 42.34 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.10 -3.15 4.91 -19.87 -0.10 -3.24 16 25 C -0.11 -3.01 7.87 22.27 0.18 -2.83 16 26 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 27 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 28 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 29 C -0.14 -4.42 9.67 22.27 0.22 -4.21 16 30 H 0.10 1.69 3.96 -2.39 -0.01 1.68 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.00 7.39 -2.39 -0.02 0.99 16 33 H 0.44 9.86 8.96 -92.71 -0.83 9.02 16 34 H 0.42 9.39 8.60 -92.71 -0.80 8.59 16 35 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 37 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.14 2.94 6.61 -2.91 -0.02 2.92 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.11 3.58 8.04 -2.91 -0.02 3.56 16 Total: -1.00 -74.41 354.46 1.36 -73.05 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.56 Total: 25.04 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.44 Total: 1.86 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -4.35 Total: -90.76 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.21 Total: -51.53 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -74.41 1.36 -73.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497106209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.866 kcal (2) G-P(sol) polarization free energy of solvation -74.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds