Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.46957 * 2 1 4 4 O 1.45712 * 110.64011 * 237.29294 * 2 1 3 5 5 C 1.33764 * 109.47440 * 241.31650 * 4 2 1 6 6 O 1.21517 * 123.07119 * 180.02562 * 5 4 2 7 7 N 1.34318 * 113.90662 * 0.08030 * 5 4 2 8 8 C 1.47096 * 108.70403 * 359.86941 * 7 5 4 9 9 H 1.08999 * 110.56600 * 118.76973 * 8 7 5 10 10 C 1.50701 * 110.56060 * 241.47664 * 8 7 5 11 11 O 1.21279 * 120.00321 * 16.55565 * 10 8 7 12 12 N 1.34777 * 119.99636 * 196.55301 * 10 8 7 13 13 C 1.46499 * 119.99802 * 179.97438 * 12 10 8 14 14 H 1.08999 * 109.47157 * 35.00051 * 13 12 10 15 15 C 1.53005 * 109.47037 * 155.00168 * 13 12 10 16 16 C 1.50695 * 109.46948 * 295.00272 * 15 13 12 17 17 H 1.07996 * 120.00568 * 359.97438 * 16 15 13 18 18 C 1.37883 * 119.99585 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00208 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99617 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48511 * 109.46795 * 120.00235 * 20 18 16 23 23 H 1.48498 * 109.47234 * 239.99754 * 20 18 16 24 24 C 1.50702 * 109.47629 * 275.00358 * 13 12 10 25 25 C 1.38234 * 120.00271 * 139.99738 * 24 13 12 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 13 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 319.97866 * 24 13 12 30 30 H 1.08998 * 109.47142 * 297.36917 * 1 2 3 31 31 H 1.09004 * 109.46687 * 57.36225 * 1 2 3 32 32 H 1.08998 * 109.47660 * 177.36186 * 1 2 3 33 33 H 0.97008 * 125.73634 * 179.97438 * 7 5 4 34 34 H 0.96998 * 120.00356 * 0.02562 * 12 10 8 35 35 H 1.08997 * 109.47096 * 55.00279 * 15 13 12 36 36 H 1.09000 * 109.46911 * 174.99918 * 15 13 12 37 37 H 0.97006 * 119.99881 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.99769 * 359.97438 * 25 24 13 39 39 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 40 40 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 41 41 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 42 42 H 1.07997 * 120.00489 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0436 -0.7368 -1.1474 5 6 2.7672 -1.7780 -0.7212 6 8 3.3123 -2.5597 -1.4752 7 7 2.8361 -1.8820 0.6162 8 6 2.0701 -0.7783 1.2152 9 1 1.2485 -1.1654 1.8180 10 6 2.9688 0.0985 2.0486 11 8 4.1725 0.0341 1.9150 12 7 2.4348 0.9545 2.9423 13 6 3.3085 1.8065 3.7529 14 1 4.1767 2.1015 3.1636 15 6 2.5403 3.0555 4.1897 16 6 2.1917 3.8804 2.9777 17 1 2.4887 3.5474 1.9942 18 6 1.4935 5.0603 3.1244 19 7 1.1314 5.4656 4.3219 20 14 1.0621 6.0831 1.6220 21 1 1.5791 5.4130 0.4018 22 1 -0.4134 6.2200 1.5235 23 1 1.6768 7.4291 1.7463 24 6 3.7635 1.0449 4.9711 25 6 5.0663 1.1681 5.4165 26 6 5.4835 0.4699 6.5342 27 6 4.5977 -0.3510 7.2069 28 6 3.2947 -0.4733 6.7621 29 6 2.8779 0.2235 5.6433 30 1 -0.3633 0.4724 0.9126 31 1 -0.3633 0.5543 -0.8654 32 1 -0.3634 -1.0265 -0.0473 33 1 3.3129 -2.5694 1.1072 34 1 1.4721 1.0059 3.0494 35 1 1.6254 2.7586 4.7025 36 1 3.1600 3.6456 4.8649 37 1 0.6405 6.2959 4.4251 38 1 5.7582 1.8098 4.8912 39 1 6.5012 0.5664 6.8826 40 1 4.9248 -0.8999 8.0776 41 1 2.6027 -1.1150 7.2873 42 1 1.8601 0.1272 5.2952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497106211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = -89.825493 kcal Electronic energy + Delta-G solvation = -26981.528667 eV Core-core repulsion = 23119.454816 eV Total energy + Delta-G solvation = -3862.073851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89713 -39.70755 -38.53937 -37.27017 -35.50753 -34.64072 -32.96202 -32.26194 -31.17006 -30.57552 -29.00740 -27.19801 -24.94337 -23.13527 -22.43151 -22.35672 -22.08406 -20.84954 -19.97505 -18.21459 -17.53250 -17.27778 -16.71471 -16.29502 -16.01996 -15.59417 -15.03385 -14.91139 -14.68456 -14.63546 -14.35936 -14.19864 -13.53599 -13.41498 -13.21940 -13.09898 -12.80198 -12.62142 -12.30747 -12.22478 -11.83991 -11.70409 -11.25393 -11.07310 -10.89466 -10.84076 -10.75609 -10.69982 -10.62104 -10.20952 -9.92761 -9.45476 -9.23464 -8.74396 -8.62945 -8.57472 -8.31489 -6.20964 -4.25629 1.64923 1.68499 2.47475 2.56232 2.68828 3.14005 3.17757 3.27954 3.30275 3.57780 3.94194 4.09896 4.29161 4.39460 4.58780 4.76987 5.02362 5.09722 5.15119 5.15899 5.16719 5.25928 5.40733 5.46231 5.56277 5.77641 5.81275 5.82858 6.01055 6.21857 6.29871 6.42328 6.61842 6.65128 6.72381 6.74750 6.95504 7.13711 7.28139 7.34985 7.45484 7.74166 7.78014 8.00780 8.11558 8.38071 8.80337 9.40534 10.89289 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007677 B = 0.006056 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.602667 B = 4622.769126 C = 7565.343624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 H 0.125 0.875 4 O -0.321 6.321 5 C 0.652 3.348 6 O -0.525 6.525 7 N -0.710 5.710 8 C 0.079 3.921 9 H 0.124 0.876 10 C 0.499 3.501 11 O -0.527 6.527 12 N -0.691 5.691 13 C 0.184 3.816 14 H 0.089 0.911 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.074 4.074 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.125 4.125 29 C -0.109 4.109 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.438 0.562 34 H 0.403 0.597 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 -11.627 1.768 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 H 0.143 0.857 4 O -0.231 6.231 5 C 0.404 3.596 6 O -0.410 6.410 7 N -0.382 5.382 8 C -0.031 4.031 9 H 0.141 0.859 10 C 0.281 3.719 11 O -0.403 6.403 12 N -0.341 5.341 13 C 0.081 3.919 14 H 0.107 0.893 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.717 3.283 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.075 4.075 25 C -0.126 4.126 26 C -0.140 4.140 27 C -0.151 4.151 28 C -0.143 4.143 29 C -0.127 4.127 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.282 0.718 34 H 0.238 0.762 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.035 -11.718 1.022 11.808 hybrid contribution -0.506 0.548 -0.114 0.755 sum -1.541 -11.170 0.908 11.312 Atomic orbital electron populations 1.22166 0.90844 1.03855 1.04989 1.23865 0.96854 0.96916 0.79984 0.85699 1.87320 1.63773 1.39041 1.32942 1.18511 0.78023 0.80594 0.82427 1.91062 1.49118 1.42794 1.58045 1.45700 1.56291 1.30296 1.05934 1.22449 0.95206 0.88999 0.96494 0.85855 1.20383 0.89101 0.81426 0.80968 1.90740 1.14591 1.67597 1.67376 1.45966 1.10946 1.38884 1.38257 1.20327 0.94463 0.89786 0.87369 0.89324 1.19406 0.95252 0.89277 0.97414 1.21129 1.36046 1.06055 0.92989 0.92353 1.24981 0.95726 0.97500 0.95767 1.69958 1.38664 1.22594 1.21546 0.86576 0.78104 0.80482 0.83113 1.19637 1.20933 1.20934 1.20501 0.93550 0.96202 0.97265 1.21026 0.95553 0.99283 0.96712 1.21061 0.99364 0.97525 0.96015 1.21021 0.94071 0.99926 1.00128 1.21052 0.96053 1.00145 0.97025 1.20893 0.99237 0.97077 0.95530 0.88908 0.90005 0.91213 0.71841 0.76203 0.95580 0.94608 0.92794 0.86146 0.86535 0.86768 0.86665 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.46 37.16 0.35 -0.94 16 2 C 0.08 0.90 4.13 -26.17 -0.11 0.79 16 3 H 0.13 1.52 7.72 -51.93 -0.40 1.12 16 4 O -0.32 -4.66 10.80 -37.81 -0.41 -5.07 16 5 C 0.65 10.14 9.16 53.85 0.49 10.63 16 6 O -0.53 -9.93 18.04 -19.12 -0.35 -10.28 16 7 N -0.71 -8.81 5.67 -59.27 -0.34 -9.15 16 8 C 0.08 0.86 3.81 -68.19 -0.26 0.60 16 9 H 0.12 0.89 7.73 -51.93 -0.40 0.49 16 10 C 0.50 7.31 6.90 -10.98 -0.08 7.24 16 11 O -0.53 -9.92 16.24 5.56 0.09 -9.83 16 12 N -0.69 -10.13 4.03 -54.93 -0.22 -10.35 16 13 C 0.18 3.31 2.12 -69.08 -0.15 3.16 16 14 H 0.09 1.79 7.44 -51.93 -0.39 1.40 16 15 C 0.02 0.51 4.49 -27.88 -0.13 0.39 16 16 C -0.52 -12.61 8.84 -34.44 -0.30 -12.91 16 17 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -23.98 13.29 55.43 0.74 -23.25 16 20 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.07 -1.23 4.91 -104.62 -0.51 -1.74 16 25 C -0.11 -1.72 9.67 -39.59 -0.38 -2.10 16 26 C -0.12 -1.69 10.05 -39.59 -0.40 -2.09 16 27 C -0.13 -1.73 10.05 -39.58 -0.40 -2.12 16 28 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 29 C -0.11 -1.60 9.32 -39.58 -0.37 -1.97 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.44 4.80 8.96 -40.82 -0.37 4.43 16 34 H 0.40 5.02 8.60 -40.82 -0.35 4.67 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.12 1.86 8.04 -52.49 -0.42 1.44 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.52 7.72 -52.49 -0.41 1.12 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -32.65 364.50 -8.40 -41.05 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.66 Total: 8.36 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.73 Total: -1.61 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.18 Total: -42.74 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.66 Total: -25.17 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.65 -8.40 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497106211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.776 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds