Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.46957 * 2 1 4 4 O 1.45712 * 110.64011 * 237.29294 * 2 1 3 5 5 C 1.33764 * 109.47440 * 241.31650 * 4 2 1 6 6 O 1.21517 * 123.07119 * 180.02562 * 5 4 2 7 7 N 1.34318 * 113.90662 * 0.08030 * 5 4 2 8 8 C 1.47096 * 108.70403 * 359.86941 * 7 5 4 9 9 H 1.08999 * 110.56600 * 118.76973 * 8 7 5 10 10 C 1.50701 * 110.56060 * 241.47664 * 8 7 5 11 11 O 1.21279 * 120.00321 * 16.55565 * 10 8 7 12 12 N 1.34777 * 119.99636 * 196.55301 * 10 8 7 13 13 C 1.46499 * 119.99802 * 179.97438 * 12 10 8 14 14 H 1.08999 * 109.47157 * 35.00051 * 13 12 10 15 15 C 1.53005 * 109.47037 * 155.00168 * 13 12 10 16 16 C 1.50695 * 109.46948 * 295.00272 * 15 13 12 17 17 H 1.07996 * 120.00568 * 359.97438 * 16 15 13 18 18 C 1.37883 * 119.99585 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00208 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99617 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47260 * 0.02562 * 20 18 16 22 22 H 1.48511 * 109.46795 * 120.00235 * 20 18 16 23 23 H 1.48498 * 109.47234 * 239.99754 * 20 18 16 24 24 C 1.50702 * 109.47629 * 275.00358 * 13 12 10 25 25 C 1.38234 * 120.00271 * 139.99738 * 24 13 12 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 13 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 319.97866 * 24 13 12 30 30 H 1.08998 * 109.47142 * 297.36917 * 1 2 3 31 31 H 1.09004 * 109.46687 * 57.36225 * 1 2 3 32 32 H 1.08998 * 109.47660 * 177.36186 * 1 2 3 33 33 H 0.97008 * 125.73634 * 179.97438 * 7 5 4 34 34 H 0.96998 * 120.00356 * 0.02562 * 12 10 8 35 35 H 1.08997 * 109.47096 * 55.00279 * 15 13 12 36 36 H 1.09000 * 109.46911 * 174.99918 * 15 13 12 37 37 H 0.97006 * 119.99881 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.99769 * 359.97438 * 25 24 13 39 39 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 40 40 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 41 41 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 42 42 H 1.07997 * 120.00489 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 8 2.0436 -0.7368 -1.1474 5 6 2.7672 -1.7780 -0.7212 6 8 3.3123 -2.5597 -1.4752 7 7 2.8361 -1.8820 0.6162 8 6 2.0701 -0.7783 1.2152 9 1 1.2485 -1.1654 1.8180 10 6 2.9688 0.0985 2.0486 11 8 4.1725 0.0341 1.9150 12 7 2.4348 0.9545 2.9423 13 6 3.3085 1.8065 3.7529 14 1 4.1767 2.1015 3.1636 15 6 2.5403 3.0555 4.1897 16 6 2.1917 3.8804 2.9777 17 1 2.4887 3.5474 1.9942 18 6 1.4935 5.0603 3.1244 19 7 1.1314 5.4656 4.3219 20 14 1.0621 6.0831 1.6220 21 1 1.5791 5.4130 0.4018 22 1 -0.4134 6.2200 1.5235 23 1 1.6768 7.4291 1.7463 24 6 3.7635 1.0449 4.9711 25 6 5.0663 1.1681 5.4165 26 6 5.4835 0.4699 6.5342 27 6 4.5977 -0.3510 7.2069 28 6 3.2947 -0.4733 6.7621 29 6 2.8779 0.2235 5.6433 30 1 -0.3633 0.4724 0.9126 31 1 -0.3633 0.5543 -0.8654 32 1 -0.3634 -1.0265 -0.0473 33 1 3.3129 -2.5694 1.1072 34 1 1.4721 1.0059 3.0494 35 1 1.6254 2.7586 4.7025 36 1 3.1600 3.6456 4.8649 37 1 0.6405 6.2959 4.4251 38 1 5.7582 1.8098 4.8912 39 1 6.5012 0.5664 6.8826 40 1 4.9248 -0.8999 8.0776 41 1 2.6027 -1.1150 7.2873 42 1 1.8601 0.1272 5.2952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497106211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = -112.556045 kcal Electronic energy + Delta-G solvation = -26982.514338 eV Core-core repulsion = 23119.454816 eV Total energy + Delta-G solvation = -3863.059522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.99373 -40.95920 -39.71263 -38.50418 -36.89681 -35.76448 -34.74454 -33.32533 -32.31473 -31.67192 -30.54093 -28.28158 -26.49068 -24.15570 -23.76876 -23.44222 -23.35131 -22.07779 -21.25987 -19.34918 -18.71216 -18.57820 -18.15497 -17.62262 -17.24027 -16.89222 -16.40136 -16.23175 -16.02954 -15.68462 -15.50480 -15.33863 -14.81398 -14.48551 -14.44382 -14.17649 -14.14588 -13.79283 -13.65137 -13.42192 -12.99048 -12.91065 -12.70623 -12.60239 -12.46317 -12.13251 -12.01990 -11.89712 -11.85882 -11.58067 -11.46616 -11.28006 -10.58196 -10.37141 -10.06808 -9.73847 -9.50960 -8.16972 -6.26549 0.51714 0.57829 1.33221 1.39419 1.41602 1.47000 1.55631 1.58654 2.02837 2.42865 2.52202 2.97403 2.98784 3.18385 3.47752 3.59457 3.89203 4.00019 4.05253 4.13144 4.22923 4.28435 4.34421 4.46412 4.67146 4.77087 4.80428 4.83382 4.88277 5.13703 5.21462 5.24411 5.26333 5.47493 5.59925 5.62870 5.63047 5.66707 5.81676 5.89140 6.03926 6.18082 6.22687 6.56440 6.87098 6.87463 7.20236 7.43101 8.93649 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.007677 B = 0.006056 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.602667 B = 4622.769126 C = 7565.343624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.075 3.925 3 H 0.112 0.888 4 O -0.334 6.334 5 C 0.649 3.351 6 O -0.567 6.567 7 N -0.698 5.698 8 C 0.091 3.909 9 H 0.177 0.823 10 C 0.501 3.499 11 O -0.573 6.573 12 N -0.681 5.681 13 C 0.201 3.799 14 H 0.057 0.943 15 C 0.037 3.963 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.015 3.985 19 N -0.925 5.925 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.291 1.291 24 C -0.099 4.099 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.124 4.124 29 C -0.117 4.117 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.445 0.555 34 H 0.416 0.584 35 H 0.020 0.980 36 H 0.000 1.000 37 H 0.263 0.737 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -13.098 2.619 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.130 0.870 4 O -0.244 6.244 5 C 0.402 3.598 6 O -0.456 6.456 7 N -0.369 5.369 8 C -0.019 4.019 9 H 0.194 0.806 10 C 0.285 3.715 11 O -0.452 6.452 12 N -0.331 5.331 13 C 0.096 3.904 14 H 0.075 0.925 15 C 0.000 4.000 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.184 4.184 19 N -0.565 5.565 20 Si 0.775 3.225 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.217 1.217 24 C -0.100 4.100 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.148 4.148 28 C -0.141 4.141 29 C -0.135 4.135 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.290 0.710 34 H 0.254 0.746 35 H 0.039 0.961 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.786 -13.187 1.891 13.610 hybrid contribution 0.090 1.041 -0.295 1.086 sum -2.696 -12.146 1.597 12.544 Atomic orbital electron populations 1.22221 0.87693 1.05222 1.06143 1.24142 0.99110 0.95845 0.78941 0.87045 1.87302 1.63680 1.38853 1.34561 1.18635 0.77770 0.80418 0.82959 1.91021 1.50870 1.44448 1.59225 1.45667 1.55902 1.30366 1.04999 1.22631 0.95121 0.87857 0.96255 0.80634 1.20967 0.88933 0.81124 0.80472 1.90731 1.16892 1.68901 1.68628 1.45761 1.11255 1.38242 1.37893 1.19742 0.93126 0.89351 0.88168 0.92489 1.19150 0.94613 0.90379 0.95888 1.21416 1.35006 1.06228 0.93636 0.92400 1.25693 0.95935 0.98711 0.98029 1.70065 1.39856 1.23156 1.23418 0.85642 0.78138 0.78459 0.80251 1.18981 1.19961 1.21723 1.20419 0.94479 0.97709 0.97378 1.21162 0.95646 1.00409 0.98113 1.21355 1.00818 0.97096 0.95194 1.21465 0.93784 0.99038 1.00559 1.21465 0.96790 0.99638 0.96247 1.21123 0.99594 0.96763 0.96052 0.86719 0.89980 0.89634 0.71013 0.74630 0.96142 0.98131 0.92837 0.87335 0.84414 0.83487 0.83413 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.46 71.98 0.68 -1.29 16 2 C 0.08 1.55 4.13 30.96 0.13 1.68 16 3 H 0.11 2.61 7.72 -2.39 -0.02 2.59 16 4 O -0.33 -9.42 10.80 -47.25 -0.51 -9.93 16 5 C 0.65 19.84 9.16 129.86 1.19 21.03 16 6 O -0.57 -21.67 18.04 19.63 0.35 -21.31 16 7 N -0.70 -16.29 5.67 -572.81 -3.25 -19.54 16 8 C 0.09 1.77 3.81 44.50 0.17 1.94 16 9 H 0.18 1.69 7.73 -2.39 -0.02 1.67 16 10 C 0.50 14.23 6.90 87.66 0.60 14.83 16 11 O -0.57 -21.84 16.24 -3.03 -0.05 -21.89 16 12 N -0.68 -19.43 4.03 -446.09 -1.80 -21.23 16 13 C 0.20 7.42 2.12 44.25 0.09 7.51 16 14 H 0.06 2.44 7.44 -2.39 -0.02 2.43 16 15 C 0.04 1.66 4.49 29.85 0.13 1.79 16 16 C -0.52 -25.54 8.84 25.60 0.23 -25.31 16 17 H 0.06 2.77 7.74 -2.91 -0.02 2.75 16 18 C 0.02 0.78 5.46 84.66 0.46 1.24 16 19 N -0.92 -50.48 13.29 21.45 0.28 -50.20 16 20 Si 0.95 40.21 29.54 68.60 2.03 42.23 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 24 C -0.10 -3.31 4.91 -19.87 -0.10 -3.40 16 25 C -0.13 -4.42 9.67 22.27 0.22 -4.21 16 26 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 27 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 28 C -0.12 -2.88 10.05 22.27 0.22 -2.65 16 29 C -0.12 -3.25 9.32 22.27 0.21 -3.04 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.45 9.13 8.96 -92.70 -0.83 8.30 16 34 H 0.42 9.56 8.60 -92.71 -0.80 8.76 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.26 13.66 8.31 -92.70 -0.77 12.89 16 38 H 0.11 3.64 8.04 -2.91 -0.02 3.62 16 39 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 42 H 0.13 3.12 7.72 -2.91 -0.02 3.10 16 Total: -1.00 -73.78 364.50 1.18 -72.60 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.57 Total: 25.07 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 4.69 Total: 4.20 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -4.76 Total: -90.97 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -0.21 Total: -53.13 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -73.78 1.18 -72.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497106211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.956 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds