Wall clock time and date at job start Tue Mar 31 2020 13:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47015 * 2 1 4 4 C 1.46496 * 120.00113 * 270.00330 * 3 2 1 5 5 C 1.50708 * 109.47058 * 269.99903 * 4 3 2 6 6 H 1.07996 * 119.99571 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99828 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00299 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99647 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47272 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47366 * 119.99974 * 9 7 5 12 12 H 1.48504 * 109.47092 * 239.99556 * 9 7 5 13 13 C 1.34775 * 119.99800 * 89.99855 * 3 2 1 14 14 O 1.21283 * 120.00268 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00169 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.47293 * 179.97438 * 15 13 3 17 17 C 1.45966 * 118.97048 * 269.97785 * 16 15 13 18 18 C 1.50541 * 110.33020 * 162.76328 * 17 16 15 19 19 C 1.38282 * 119.72680 * 196.92105 * 18 17 16 20 20 C 1.38209 * 120.12810 * 180.02562 * 19 18 17 21 21 C 1.38286 * 120.06219 * 0.03190 * 20 19 18 22 22 C 1.38066 * 120.03155 * 359.95661 * 21 20 19 23 23 C 1.38563 * 120.33798 * 16.95305 * 18 17 16 24 24 O 1.35617 * 120.55748 * 359.95357 * 23 18 17 25 25 C 1.33864 * 118.85061 * 341.12460 * 24 23 18 26 26 O 1.21522 * 118.67767 * 199.34212 * 25 24 23 27 27 H 1.08993 * 109.47244 * 299.99475 * 1 2 3 28 28 H 1.08997 * 109.47470 * 59.99831 * 1 2 3 29 29 H 1.09008 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47003 * 240.00276 * 2 1 3 31 31 H 1.08997 * 109.47470 * 120.00169 * 2 1 3 32 32 H 1.08994 * 109.47254 * 29.99508 * 4 3 2 33 33 H 1.09003 * 109.47191 * 150.00259 * 4 3 2 34 34 H 0.97001 * 119.99807 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47498 * 59.99656 * 15 13 3 36 36 H 1.09002 * 109.46802 * 299.99943 * 15 13 3 37 37 H 1.09006 * 109.32497 * 283.05307 * 17 16 15 38 38 H 1.08995 * 109.32688 * 42.69864 * 17 16 15 39 39 H 1.07992 * 119.93366 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.96180 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.98196 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.98208 * 180.31826 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1492 2.3906 -2.8774 8 7 3.3492 3.1267 -3.6175 9 14 5.9137 2.0977 -3.4163 10 1 6.6014 1.2426 -2.4159 11 1 5.9217 1.4192 -4.7373 12 1 6.6209 3.3991 -3.5241 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9922 1.3060 2.4723 16 7 2.3100 2.2033 3.5858 17 6 3.6672 2.2104 4.1230 18 6 3.8997 3.4530 4.9404 19 6 5.1913 3.8406 5.2466 20 6 5.4143 4.9797 5.9969 21 6 4.3457 5.7349 6.4441 22 6 3.0542 5.3523 6.1408 23 6 2.8270 4.2081 5.3867 24 8 1.5552 3.8399 5.0934 25 6 1.3459 2.9913 4.0794 26 8 0.2366 2.9339 3.5866 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6753 3.5172 -4.4434 35 1 2.6227 0.4187 2.5299 36 1 0.9444 1.0114 2.5302 37 1 3.8106 1.3320 4.7524 38 1 4.3811 2.1848 3.2998 39 1 6.0273 3.2516 4.8996 40 1 6.4242 5.2797 6.2349 41 1 4.5215 6.6245 7.0307 42 1 2.2204 5.9455 6.4861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497306761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:54 Heat of formation + Delta-G solvation = -62.271292 kcal Electronic energy + Delta-G solvation = -27016.273886 eV Core-core repulsion = 23155.394875 eV Total energy + Delta-G solvation = -3860.879011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95904 -39.46672 -38.76573 -37.30202 -35.98297 -35.20537 -32.86158 -32.05419 -30.52091 -30.11156 -28.85177 -26.85339 -26.15476 -24.02173 -23.08596 -22.97827 -22.32285 -20.04876 -19.21606 -18.40493 -17.41718 -17.24549 -16.50893 -16.20350 -15.99633 -15.66569 -15.25203 -14.80925 -14.67768 -14.42274 -14.19949 -13.90118 -13.82980 -13.51238 -13.33778 -13.19282 -12.95704 -12.55033 -12.05631 -12.01421 -11.82436 -11.75732 -11.52448 -11.42511 -11.20964 -10.91621 -10.73552 -10.58759 -10.49572 -10.16015 -9.70770 -9.62348 -9.14021 -8.78434 -8.48867 -8.45601 -7.69957 -6.06115 -4.11274 0.91355 1.01728 2.09478 2.71589 3.07850 3.27017 3.31151 3.35360 3.38420 3.45680 3.92714 4.16176 4.41889 4.47498 4.67850 4.87395 4.96142 5.01401 5.12187 5.13784 5.19233 5.28306 5.31707 5.41036 5.43127 5.63607 5.64527 5.76414 5.81742 5.88235 6.02846 6.07069 6.17929 6.23935 6.31184 6.52837 6.60572 7.04359 7.44395 7.51335 7.64429 7.88310 7.90950 8.21179 8.36885 8.86738 9.03077 9.53690 11.02054 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.004079 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.225820 B = 6862.327152 C = 8286.764607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.489 3.511 14 O -0.532 6.532 15 C 0.104 3.896 16 N -0.595 5.595 17 C 0.156 3.844 18 C -0.154 4.154 19 C -0.075 4.075 20 C -0.134 4.134 21 C -0.088 4.088 22 C -0.126 4.126 23 C 0.113 3.887 24 O -0.269 6.269 25 C 0.664 3.336 26 O -0.510 6.510 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -4.066 19.883 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.326 5.326 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.274 3.726 14 O -0.408 6.408 15 C -0.022 4.022 16 N -0.338 5.338 17 C 0.034 3.966 18 C -0.156 4.156 19 C -0.093 4.093 20 C -0.153 4.153 21 C -0.106 4.106 22 C -0.145 4.145 23 C 0.071 3.929 24 O -0.177 6.177 25 C 0.418 3.582 26 O -0.393 6.393 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.350 -3.247 19.601 19.914 hybrid contribution 1.112 -0.188 -0.591 1.273 sum 2.462 -3.434 19.010 19.474 Atomic orbital electron populations 1.22244 0.96550 1.01522 1.02735 1.21459 0.93768 0.83998 1.02669 1.48254 1.63518 1.13314 1.07553 1.19282 0.96289 0.93675 0.77983 1.21447 0.96849 1.31896 1.06274 0.92448 1.24942 0.97830 0.94931 0.96427 1.69946 1.35588 1.33377 1.14309 0.86451 0.84637 0.78007 0.78338 1.19849 1.20937 1.20921 1.20602 0.79203 0.87440 0.85372 1.90692 1.45499 1.17736 1.86917 1.21567 1.04692 0.91724 0.84178 1.46678 1.10026 1.42036 1.35109 1.20340 0.83619 0.95151 0.97539 1.19907 0.94117 0.98717 1.02828 1.20795 0.94943 0.96661 0.96897 1.21153 0.99510 0.95401 0.99201 1.21021 0.91292 0.99474 0.98804 1.20617 0.98389 0.94675 1.00776 1.18548 0.81113 0.95055 0.98227 1.84289 1.27235 1.58337 1.47877 1.17548 0.84978 0.77984 0.77709 1.91030 1.22672 1.69462 1.56148 0.92726 0.91945 0.92054 0.89689 0.91865 0.94886 0.93977 0.92749 0.87194 0.86525 0.89555 0.88169 0.84697 0.85091 0.84727 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.43 2.46 -175.06 -0.43 -12.86 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.49 10.23 7.73 -10.99 -0.08 10.15 16 14 O -0.53 -13.70 16.01 5.56 0.09 -13.61 16 15 C 0.10 1.57 4.35 -5.19 -0.02 1.55 16 16 N -0.60 -9.29 2.32 -183.28 -0.43 -9.72 16 17 C 0.16 1.91 6.39 -5.56 -0.04 1.87 16 18 C -0.15 -1.95 5.83 -104.56 -0.61 -2.56 16 19 C -0.07 -0.75 9.72 -39.58 -0.38 -1.13 16 20 C -0.13 -1.18 10.04 -39.57 -0.40 -1.58 16 21 C -0.09 -0.79 10.04 -39.63 -0.40 -1.18 16 22 C -0.13 -1.42 9.97 -39.40 -0.39 -1.81 16 23 C 0.11 1.59 6.57 -39.21 -0.26 1.33 16 24 O -0.27 -4.45 9.97 -21.68 -0.22 -4.67 16 25 C 0.66 12.01 8.41 53.68 0.45 12.46 16 26 O -0.51 -10.68 16.51 -19.42 -0.32 -11.00 16 27 H 0.05 0.76 7.22 -51.93 -0.38 0.38 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.11 1.21 7.30 -51.93 -0.38 0.83 16 36 H 0.12 1.69 6.32 -51.93 -0.33 1.36 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -37.04 358.41 -7.98 -45.01 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.57 Total: -0.99 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: -2.22 Total: 11.75 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.12 Total: -48.46 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.45 Total: -29.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.04 -7.98 -45.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497306761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.258 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds