Wall clock time and date at job start Tue Mar 31 2020 13:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47015 * 2 1 4 4 C 1.46496 * 120.00113 * 270.00330 * 3 2 1 5 5 C 1.50708 * 109.47058 * 269.99903 * 4 3 2 6 6 H 1.07996 * 119.99571 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99828 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00299 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99647 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47272 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47366 * 119.99974 * 9 7 5 12 12 H 1.48504 * 109.47092 * 239.99556 * 9 7 5 13 13 C 1.34775 * 119.99800 * 89.99855 * 3 2 1 14 14 O 1.21283 * 120.00268 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00169 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.47293 * 179.97438 * 15 13 3 17 17 C 1.45966 * 118.97048 * 269.97785 * 16 15 13 18 18 C 1.50541 * 110.33020 * 162.76328 * 17 16 15 19 19 C 1.38282 * 119.72680 * 196.92105 * 18 17 16 20 20 C 1.38209 * 120.12810 * 180.02562 * 19 18 17 21 21 C 1.38286 * 120.06219 * 0.03190 * 20 19 18 22 22 C 1.38066 * 120.03155 * 359.95661 * 21 20 19 23 23 C 1.38563 * 120.33798 * 16.95305 * 18 17 16 24 24 O 1.35617 * 120.55748 * 359.95357 * 23 18 17 25 25 C 1.33864 * 118.85061 * 341.12460 * 24 23 18 26 26 O 1.21522 * 118.67767 * 199.34212 * 25 24 23 27 27 H 1.08993 * 109.47244 * 299.99475 * 1 2 3 28 28 H 1.08997 * 109.47470 * 59.99831 * 1 2 3 29 29 H 1.09008 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47003 * 240.00276 * 2 1 3 31 31 H 1.08997 * 109.47470 * 120.00169 * 2 1 3 32 32 H 1.08994 * 109.47254 * 29.99508 * 4 3 2 33 33 H 1.09003 * 109.47191 * 150.00259 * 4 3 2 34 34 H 0.97001 * 119.99807 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47498 * 59.99656 * 15 13 3 36 36 H 1.09002 * 109.46802 * 299.99943 * 15 13 3 37 37 H 1.09006 * 109.32497 * 283.05307 * 17 16 15 38 38 H 1.08995 * 109.32688 * 42.69864 * 17 16 15 39 39 H 1.07992 * 119.93366 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.96180 * 179.97438 * 20 19 18 41 41 H 1.08003 * 119.98196 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.98208 * 180.31826 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1492 2.3906 -2.8774 8 7 3.3492 3.1267 -3.6175 9 14 5.9137 2.0977 -3.4163 10 1 6.6014 1.2426 -2.4159 11 1 5.9217 1.4192 -4.7373 12 1 6.6209 3.3991 -3.5241 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9922 1.3060 2.4723 16 7 2.3100 2.2033 3.5858 17 6 3.6672 2.2104 4.1230 18 6 3.8997 3.4530 4.9404 19 6 5.1913 3.8406 5.2466 20 6 5.4143 4.9797 5.9969 21 6 4.3457 5.7349 6.4441 22 6 3.0542 5.3523 6.1408 23 6 2.8270 4.2081 5.3867 24 8 1.5552 3.8399 5.0934 25 6 1.3459 2.9913 4.0794 26 8 0.2366 2.9339 3.5866 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6753 3.5172 -4.4434 35 1 2.6227 0.4187 2.5299 36 1 0.9444 1.0114 2.5302 37 1 3.8106 1.3320 4.7524 38 1 4.3811 2.1848 3.2998 39 1 6.0273 3.2516 4.8996 40 1 6.4242 5.2797 6.2349 41 1 4.5215 6.6245 7.0307 42 1 2.2204 5.9455 6.4861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497306761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:52 Heat of formation + Delta-G solvation = -86.493447 kcal Electronic energy + Delta-G solvation = -27017.324238 eV Core-core repulsion = 23155.394875 eV Total energy + Delta-G solvation = -3861.929363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -43.09141 -40.90829 -39.94225 -38.49300 -37.28152 -36.79391 -34.92581 -33.03111 -31.65771 -31.37615 -30.26162 -28.44580 -27.35627 -25.35323 -24.65819 -24.12070 -23.52963 -21.02887 -20.54207 -19.75470 -18.77297 -18.55603 -18.43598 -17.67838 -17.28257 -16.74159 -16.55663 -16.19625 -16.15950 -15.65121 -15.36187 -15.07106 -14.86687 -14.79721 -14.61801 -14.41402 -14.24429 -14.04068 -13.63186 -13.33404 -13.19155 -12.99372 -12.78070 -12.69915 -12.64492 -12.50766 -12.39451 -12.16206 -11.89241 -11.71838 -11.68485 -11.12890 -10.66073 -10.19955 -9.88440 -9.49483 -9.48049 -8.22397 -6.37951 0.06563 0.21450 0.87174 1.37213 1.39506 1.49398 1.51508 1.73518 1.97998 2.32183 2.46817 2.63911 3.07635 3.27484 3.59509 3.64285 3.76244 4.04821 4.10914 4.21999 4.25964 4.29429 4.36674 4.41421 4.44161 4.51730 4.63807 4.75824 4.90590 4.93580 4.97757 5.02020 5.03807 5.20481 5.21955 5.37092 5.39695 5.43905 5.56987 5.82104 5.83036 6.04644 6.46054 6.58407 6.69573 6.75941 7.26181 7.41802 8.85540 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.004079 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.225820 B = 6862.327152 C = 8286.764607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.599 5.599 4 C 0.263 3.737 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.972 3.028 10 H -0.259 1.259 11 H -0.271 1.271 12 H -0.285 1.285 13 C 0.480 3.520 14 O -0.593 6.593 15 C 0.115 3.885 16 N -0.592 5.592 17 C 0.150 3.850 18 C -0.172 4.172 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.084 4.084 22 C -0.137 4.137 23 C 0.066 3.934 24 O -0.283 6.283 25 C 0.657 3.343 26 O -0.556 6.556 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.020 0.980 33 H -0.014 1.014 34 H 0.266 0.734 35 H 0.165 0.835 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -6.033 21.765 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.330 5.330 4 C 0.142 3.858 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.796 3.204 10 H -0.183 1.183 11 H -0.196 1.196 12 H -0.211 1.211 13 C 0.267 3.733 14 O -0.474 6.474 15 C -0.010 4.010 16 N -0.334 5.334 17 C 0.029 3.971 18 C -0.173 4.173 19 C -0.098 4.098 20 C -0.144 4.144 21 C -0.101 4.101 22 C -0.155 4.155 23 C 0.025 3.975 24 O -0.191 6.191 25 C 0.411 3.589 26 O -0.443 6.443 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.038 0.962 33 H 0.005 0.995 34 H 0.075 0.925 35 H 0.182 0.818 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.114 0.886 39 H 0.178 0.822 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.214 -5.270 21.523 22.556 hybrid contribution 0.260 0.515 -1.119 1.259 sum 4.474 -4.756 20.404 21.423 Atomic orbital electron populations 1.22190 0.95296 1.03613 1.01248 1.21853 0.94794 0.80959 1.04825 1.48283 1.63446 1.15344 1.05926 1.18692 0.95741 0.91063 0.80351 1.21729 0.97476 1.31887 1.06495 0.92002 1.25945 1.02664 0.94429 0.96483 1.70091 1.37951 1.34404 1.14855 0.85298 0.78631 0.77931 0.78509 1.18296 1.19630 1.21110 1.21689 0.77633 0.86963 0.87033 1.90656 1.48240 1.20550 1.87963 1.21672 1.06586 0.92179 0.80559 1.46831 1.10915 1.41180 1.34484 1.20692 0.81476 0.96975 0.97965 1.20143 0.94837 0.99037 1.03255 1.21180 0.94499 0.97382 0.96715 1.21650 1.01090 0.94300 0.97399 1.21464 0.90161 1.00298 0.98224 1.20929 0.99992 0.94050 1.00534 1.19063 0.80456 0.97126 1.00896 1.84212 1.29291 1.58158 1.47425 1.17785 0.85038 0.78233 0.77846 1.90974 1.24469 1.70922 1.57885 0.92985 0.94699 0.88070 0.90139 0.86994 0.96209 0.99543 0.92525 0.81775 0.85517 0.85303 0.88556 0.82203 0.81673 0.81388 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 10.24 71.98 0.74 -3.59 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.45 2.46 -826.16 -2.03 -27.48 16 4 C 0.26 14.52 5.16 85.64 0.44 14.96 16 5 C -0.54 -30.67 9.39 25.60 0.24 -30.43 16 6 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 7 C 0.00 0.19 5.46 84.65 0.46 0.65 16 8 N -0.93 -57.36 13.29 21.44 0.28 -57.08 16 9 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.48 20.34 7.73 87.66 0.68 21.02 16 14 O -0.59 -32.05 16.01 -3.04 -0.05 -32.10 16 15 C 0.11 3.29 4.35 85.63 0.37 3.66 16 16 N -0.59 -18.12 2.32 -965.51 -2.24 -20.36 16 17 C 0.15 3.40 6.39 85.68 0.55 3.95 16 18 C -0.17 -4.14 5.83 -19.83 -0.12 -4.26 16 19 C -0.08 -1.39 9.72 22.27 0.22 -1.18 16 20 C -0.13 -1.80 10.04 22.27 0.22 -1.57 16 21 C -0.08 -1.29 10.04 22.24 0.22 -1.06 16 22 C -0.14 -3.01 9.97 22.39 0.22 -2.78 16 23 C 0.07 1.88 6.57 22.51 0.15 2.02 16 24 O -0.28 -9.79 9.97 11.80 0.12 -9.67 16 25 C 0.66 24.54 8.41 129.92 1.09 25.63 16 26 O -0.56 -24.39 16.51 19.90 0.33 -24.06 16 27 H 0.05 1.39 7.22 -2.39 -0.02 1.38 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 31 H 0.11 2.18 6.44 -2.39 -0.02 2.17 16 32 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 33 H -0.01 -0.89 7.42 -2.39 -0.02 -0.91 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.16 2.87 7.30 -2.39 -0.02 2.86 16 36 H 0.13 3.46 6.32 -2.39 -0.02 3.44 16 37 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.10 2.27 8.13 -2.39 -0.02 2.25 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -88.77 358.41 5.48 -83.30 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.03 Total: 10.77 kcal Atomic # 6 Polarization: 24.37 SS G_CDS: 6.00 Total: 30.37 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.98 Total: -104.91 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: 0.40 Total: -65.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -88.77 5.48 -83.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497306761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.196 kcal (2) G-P(sol) polarization free energy of solvation -88.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds