Wall clock time and date at job start Tue Mar 31 2020 13:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21312 * 119.99296 * 2 1 4 4 C 1.46648 * 119.99921 * 179.97438 * 2 1 3 5 5 C 1.40053 * 120.24310 * 5.48738 * 4 2 1 6 6 C 1.37630 * 119.89978 * 180.02562 * 5 4 2 7 7 C 1.38700 * 120.39159 * 0.02562 * 6 5 4 8 8 N 1.48021 * 119.75228 * 180.02562 * 7 6 5 9 9 O 1.21801 * 119.99908 * 359.97438 * 8 7 6 10 10 O 1.21796 * 119.99892 * 179.97438 * 8 7 6 11 11 C 1.37938 * 120.49397 * 359.71717 * 7 6 5 12 12 C 1.38955 * 120.08686 * 0.55937 * 11 7 6 13 13 N 1.38702 * 120.19733 * 179.72020 * 12 11 7 14 14 C 1.46848 * 110.99621 * 295.52221 * 13 12 11 15 15 C 1.53042 * 109.52080 * 185.83890 * 14 13 12 16 16 C 1.53123 * 109.27527 * 300.82171 * 15 14 13 17 17 C 1.50701 * 109.52025 * 177.55848 * 16 15 14 18 18 H 1.08003 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00088 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00022 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99947 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47524 * 89.99649 * 21 19 17 23 23 H 1.48504 * 109.46936 * 209.99911 * 21 19 17 24 24 H 1.48505 * 109.47205 * 329.99504 * 21 19 17 25 25 C 1.53119 * 109.16080 * 57.65671 * 16 15 14 26 26 C 1.46844 * 110.99662 * 59.73407 * 13 12 11 27 27 H 1.09004 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46981 * 300.00248 * 1 2 3 29 29 H 1.08997 * 109.46931 * 60.00705 * 1 2 3 30 30 H 1.08002 * 120.05417 * 0.03953 * 5 4 2 31 31 H 1.07999 * 119.80199 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.95728 * 180.28060 * 11 7 6 33 33 H 1.08998 * 109.45846 * 65.82902 * 14 13 12 34 34 H 1.08993 * 109.46732 * 305.85712 * 14 13 12 35 35 H 1.08996 * 109.50055 * 180.88236 * 15 14 13 36 36 H 1.09000 * 109.50281 * 60.75909 * 15 14 13 37 37 H 1.08999 * 109.52586 * 297.74696 * 16 15 14 38 38 H 0.96999 * 120.00051 * 180.02562 * 20 19 17 39 39 H 1.09008 * 109.50458 * 62.28305 * 25 16 15 40 40 H 1.08996 * 109.50187 * 182.39828 * 25 16 15 41 41 H 1.08999 * 109.46271 * 294.17284 * 26 13 12 42 42 H 1.08996 * 109.46297 * 54.15004 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5500 -2.4831 -0.1146 6 6 2.2452 -3.6710 -0.1127 7 6 3.6273 -3.6749 0.0031 8 7 4.3608 -4.9606 0.0030 9 8 3.7506 -6.0098 -0.0982 10 8 5.5745 -4.9693 0.1040 11 6 4.3240 -2.4894 0.1122 12 6 3.6420 -1.2787 0.1183 13 7 4.3398 -0.0855 0.2337 14 6 5.0146 0.0057 1.5347 15 6 5.6507 1.3895 1.6849 16 6 6.6559 1.6095 0.5510 17 6 7.2418 2.9938 0.6589 18 1 6.9295 3.6517 1.4565 19 6 8.1773 3.4200 -0.2599 20 7 8.6882 4.6283 -0.1660 21 14 8.7180 2.2819 -1.6389 22 1 7.8360 2.4781 -2.8173 23 1 10.1213 2.5907 -2.0140 24 1 8.6267 0.8720 -1.1816 25 6 5.9377 1.4613 -0.7931 26 6 5.2932 0.0754 -0.8715 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.4738 -2.4866 -0.2049 31 1 1.7112 -4.6055 -0.2012 32 1 5.4005 -2.5023 0.1974 33 1 5.7891 -0.7587 1.5965 34 1 4.2879 -0.1484 2.3324 35 1 6.1647 1.4515 2.6440 36 1 4.8750 2.1538 1.6369 37 1 7.4528 0.8692 0.6218 38 1 9.3461 4.9283 -0.8126 39 1 5.1664 2.2267 -0.8801 40 1 6.6567 1.5747 -1.6044 41 1 6.0664 -0.6893 -0.7984 42 1 4.7689 -0.0280 -1.8215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515474033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:01 Heat of formation + Delta-G solvation = 10.028252 kcal Electronic energy + Delta-G solvation = -27179.536080 eV Core-core repulsion = 23321.792212 eV Total energy + Delta-G solvation = -3857.743868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44018 -40.90393 -38.82123 -38.00271 -36.78897 -34.46680 -32.94902 -31.99442 -30.44360 -30.08329 -29.74763 -27.05360 -26.00347 -23.64776 -23.00519 -22.70111 -21.37881 -20.44395 -19.35631 -19.11069 -18.69088 -17.75893 -17.04421 -16.74654 -16.37874 -16.23848 -15.31894 -15.05191 -14.63819 -14.55266 -14.47035 -13.81604 -13.58706 -13.41606 -13.08329 -12.89494 -12.70484 -12.39455 -12.31993 -12.28405 -11.95387 -11.80960 -11.63316 -11.47262 -11.35350 -10.95889 -10.71258 -10.25618 -10.02031 -9.95413 -9.92708 -9.71546 -9.44173 -9.15156 -9.01381 -8.54661 -8.36233 -6.07977 -4.06641 -0.68860 0.49652 0.78724 1.10566 2.05874 3.01208 3.24109 3.34360 3.36272 3.57352 3.63704 3.93280 4.19590 4.37326 4.39057 4.63982 4.71034 4.84429 4.99518 5.12625 5.20160 5.26200 5.27483 5.31933 5.36736 5.45266 5.60559 5.63687 5.74448 5.85055 5.90128 5.97881 6.11671 6.20800 6.30149 6.63561 6.68789 6.82560 7.09801 7.22589 7.24415 7.39330 7.41237 7.56661 7.75487 8.51998 8.96619 9.54505 11.05563 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.004416 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.116873 B = 6338.664001 C = 7768.507276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.373 3.627 3 O -0.383 6.383 4 C -0.101 4.101 5 C -0.075 4.075 6 C -0.080 4.080 7 C -0.011 4.011 8 N 0.024 4.976 9 O -0.157 6.157 10 O -0.156 6.156 11 C -0.101 4.101 12 C 0.162 3.838 13 N -0.485 5.485 14 C 0.061 3.939 15 C -0.094 4.094 16 C 0.013 3.987 17 C -0.510 4.510 18 H 0.074 0.926 19 C 0.070 3.930 20 N -0.901 5.901 21 Si 0.884 3.116 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.267 1.267 25 C -0.114 4.114 26 C 0.060 3.940 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.420 -16.232 -0.218 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.244 3.756 3 O -0.252 6.252 4 C -0.104 4.104 5 C -0.094 4.094 6 C -0.099 4.099 7 C -0.095 4.095 8 N 0.544 4.456 9 O -0.373 6.373 10 O -0.372 6.372 11 C -0.123 4.123 12 C 0.065 3.935 13 N -0.206 5.206 14 C -0.064 4.064 15 C -0.132 4.132 16 C -0.006 4.006 17 C -0.547 4.547 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.192 1.192 25 C -0.152 4.152 26 C -0.065 4.065 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.177 0.823 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.608 -14.454 -0.312 23.565 hybrid contribution 1.162 -1.745 -0.873 2.271 sum -17.447 -16.199 -1.185 23.837 Atomic orbital electron populations 1.22257 0.93655 1.04352 1.05305 1.22160 0.91184 0.87458 0.74754 1.90754 1.71199 1.32819 1.30415 1.21246 0.93210 0.96298 0.99626 1.21490 1.01000 0.89695 0.97206 1.20945 0.90759 1.00844 0.97313 1.21256 0.92793 0.83336 1.12067 1.43732 1.01343 1.02845 0.97649 1.94519 1.69616 1.20450 1.52762 1.94585 0.95747 1.94099 1.52794 1.21946 1.03024 0.90671 0.96666 1.19099 0.92372 0.88639 0.93388 1.59481 1.29566 1.27026 1.04536 1.22350 0.96003 1.00161 0.87898 1.21499 0.98670 0.93316 0.99672 1.19199 0.93062 0.98074 0.90236 1.21012 1.22446 0.97611 1.13675 0.90756 1.25014 0.95801 0.94794 0.97554 1.69895 1.29712 1.17563 1.36777 0.86895 0.76927 0.81875 0.82832 1.20573 1.22422 1.19210 1.22044 0.99271 0.93485 1.00384 1.22346 0.92341 1.00106 0.91730 0.90270 0.88616 0.88669 0.82306 0.82492 0.82564 0.94709 0.91592 0.91836 0.91176 0.95897 0.92684 0.90589 0.92971 0.94824 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 10.19 36.01 0.37 -0.80 16 2 C 0.37 3.98 7.20 -30.91 -0.22 3.76 16 3 O -0.38 -5.96 15.80 5.53 0.09 -5.87 16 4 C -0.10 -1.04 5.88 -104.91 -0.62 -1.66 16 5 C -0.07 -0.51 9.42 -39.12 -0.37 -0.88 16 6 C -0.08 -0.64 9.52 -39.63 -0.38 -1.02 16 7 C -0.01 -0.13 6.85 -79.88 -0.55 -0.67 16 8 N 0.02 0.32 4.45 33.99 0.15 0.47 16 9 O -0.16 -2.04 18.43 -29.46 -0.54 -2.59 16 10 O -0.16 -2.30 18.42 -29.46 -0.54 -2.85 16 11 C -0.10 -1.26 8.17 -39.43 -0.32 -1.58 16 12 C 0.16 2.11 4.67 -83.57 -0.39 1.72 16 13 N -0.48 -7.72 2.57 -170.88 -0.44 -8.16 16 14 C 0.06 0.98 5.16 -3.83 -0.02 0.96 16 15 C -0.09 -1.83 5.32 -26.65 -0.14 -1.97 16 16 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 17 C -0.51 -14.15 9.14 -34.44 -0.31 -14.47 16 18 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 19 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 20 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 21 Si 0.88 21.86 24.37 -169.99 -4.14 17.72 16 22 H -0.28 -6.71 6.89 56.52 0.39 -6.32 16 23 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 25 C -0.11 -2.44 4.84 -26.65 -0.13 -2.57 16 26 C 0.06 1.05 5.10 -3.83 -0.02 1.03 16 27 H 0.08 0.23 5.63 -51.93 -0.29 -0.06 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.16 0.45 5.97 -52.49 -0.31 0.14 16 31 H 0.16 0.93 7.59 -52.49 -0.40 0.53 16 32 H 0.16 2.05 6.64 -52.49 -0.35 1.70 16 33 H 0.03 0.54 7.55 -51.93 -0.39 0.15 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.54 7.19 -51.93 -0.37 0.17 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.08 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.05 1.17 3.38 -51.93 -0.18 1.00 16 41 H 0.03 0.57 7.30 -51.93 -0.38 0.19 16 42 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -32.87 341.67 -8.09 -40.97 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.23 Total: -1.92 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.36 Total: -16.11 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.49 Total: -34.50 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.00 Total: -11.30 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.87 -8.09 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515474033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.995 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds