Wall clock time and date at job start Tue Mar 31 2020 13:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21312 * 119.99296 * 2 1 4 4 C 1.46648 * 119.99921 * 179.97438 * 2 1 3 5 5 C 1.40053 * 120.24310 * 5.48738 * 4 2 1 6 6 C 1.37630 * 119.89978 * 180.02562 * 5 4 2 7 7 C 1.38700 * 120.39159 * 0.02562 * 6 5 4 8 8 N 1.48021 * 119.75228 * 180.02562 * 7 6 5 9 9 O 1.21801 * 119.99908 * 359.97438 * 8 7 6 10 10 O 1.21796 * 119.99892 * 179.97438 * 8 7 6 11 11 C 1.37938 * 120.49397 * 359.71717 * 7 6 5 12 12 C 1.38955 * 120.08686 * 0.55937 * 11 7 6 13 13 N 1.38702 * 120.19733 * 179.72020 * 12 11 7 14 14 C 1.46848 * 110.99621 * 295.52221 * 13 12 11 15 15 C 1.53042 * 109.52080 * 185.83890 * 14 13 12 16 16 C 1.53123 * 109.27527 * 300.82171 * 15 14 13 17 17 C 1.50701 * 109.52025 * 177.55848 * 16 15 14 18 18 H 1.08003 * 119.99867 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00088 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00022 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99947 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47524 * 89.99649 * 21 19 17 23 23 H 1.48504 * 109.46936 * 209.99911 * 21 19 17 24 24 H 1.48505 * 109.47205 * 329.99504 * 21 19 17 25 25 C 1.53119 * 109.16080 * 57.65671 * 16 15 14 26 26 C 1.46844 * 110.99662 * 59.73407 * 13 12 11 27 27 H 1.09004 * 109.46722 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46981 * 300.00248 * 1 2 3 29 29 H 1.08997 * 109.46931 * 60.00705 * 1 2 3 30 30 H 1.08002 * 120.05417 * 0.03953 * 5 4 2 31 31 H 1.07999 * 119.80199 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.95728 * 180.28060 * 11 7 6 33 33 H 1.08998 * 109.45846 * 65.82902 * 14 13 12 34 34 H 1.08993 * 109.46732 * 305.85712 * 14 13 12 35 35 H 1.08996 * 109.50055 * 180.88236 * 15 14 13 36 36 H 1.09000 * 109.50281 * 60.75909 * 15 14 13 37 37 H 1.08999 * 109.52586 * 297.74696 * 16 15 14 38 38 H 0.96999 * 120.00051 * 180.02562 * 20 19 17 39 39 H 1.09008 * 109.50458 * 62.28305 * 25 16 15 40 40 H 1.08996 * 109.50187 * 182.39828 * 25 16 15 41 41 H 1.08999 * 109.46271 * 294.17284 * 26 13 12 42 42 H 1.08996 * 109.46297 * 54.15004 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2403 -1.2700 0.0006 5 6 1.5500 -2.4831 -0.1146 6 6 2.2452 -3.6710 -0.1127 7 6 3.6273 -3.6749 0.0031 8 7 4.3608 -4.9606 0.0030 9 8 3.7506 -6.0098 -0.0982 10 8 5.5745 -4.9693 0.1040 11 6 4.3240 -2.4894 0.1122 12 6 3.6420 -1.2787 0.1183 13 7 4.3398 -0.0855 0.2337 14 6 5.0146 0.0057 1.5347 15 6 5.6507 1.3895 1.6849 16 6 6.6559 1.6095 0.5510 17 6 7.2418 2.9938 0.6589 18 1 6.9295 3.6517 1.4565 19 6 8.1773 3.4200 -0.2599 20 7 8.6882 4.6283 -0.1660 21 14 8.7180 2.2819 -1.6389 22 1 7.8360 2.4781 -2.8173 23 1 10.1213 2.5907 -2.0140 24 1 8.6267 0.8720 -1.1816 25 6 5.9377 1.4613 -0.7931 26 6 5.2932 0.0754 -0.8715 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 0.4738 -2.4866 -0.2049 31 1 1.7112 -4.6055 -0.2012 32 1 5.4005 -2.5023 0.1974 33 1 5.7891 -0.7587 1.5965 34 1 4.2879 -0.1484 2.3324 35 1 6.1647 1.4515 2.6440 36 1 4.8750 2.1538 1.6369 37 1 7.4528 0.8692 0.6218 38 1 9.3461 4.9283 -0.8126 39 1 5.1664 2.2267 -0.8801 40 1 6.6567 1.5747 -1.6044 41 1 6.0664 -0.6893 -0.7984 42 1 4.7689 -0.0280 -1.8215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515474033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:00 Heat of formation + Delta-G solvation = -10.081145 kcal Electronic energy + Delta-G solvation = -27180.408089 eV Core-core repulsion = 23321.792212 eV Total energy + Delta-G solvation = -3858.615877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.38904 -41.86963 -39.91053 -39.05117 -37.78114 -36.05754 -33.94880 -33.74393 -31.95806 -30.99337 -30.64759 -27.95489 -27.68595 -24.59386 -24.36192 -24.09745 -22.71246 -21.28867 -20.56881 -20.28560 -19.78320 -18.89706 -18.71258 -17.86955 -17.51682 -17.13176 -16.45673 -16.33948 -15.72248 -15.69282 -15.41890 -15.16825 -14.93687 -14.63421 -14.47274 -14.38266 -13.86567 -13.80772 -13.48269 -13.13354 -12.89574 -12.85167 -12.81720 -12.64593 -12.41148 -12.38461 -12.33256 -12.22757 -11.80166 -11.54227 -11.09150 -10.98359 -10.78856 -10.72378 -10.68665 -10.27134 -9.55700 -8.33532 -6.36685 -1.57340 -0.29707 -0.09974 0.21893 1.24289 1.27411 1.29797 1.39679 2.25286 2.27497 2.47471 2.92632 3.01352 3.23133 3.39959 3.60472 3.81406 3.92659 3.94153 3.99887 4.10826 4.19182 4.26218 4.40590 4.44572 4.48645 4.56916 4.60264 4.69357 4.72524 4.74640 4.82603 4.92437 5.00495 5.01951 5.12979 5.27744 5.30584 5.42254 5.61051 5.68914 5.77806 6.14093 6.28138 6.37164 6.68243 6.69748 7.28184 8.83784 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.004416 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.116873 B = 6338.664001 C = 7768.507276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.374 3.626 3 O -0.446 6.446 4 C -0.104 4.104 5 C -0.043 4.043 6 C -0.059 4.059 7 C -0.022 4.022 8 N 0.025 4.975 9 O -0.129 6.129 10 O -0.216 6.216 11 C -0.110 4.110 12 C 0.134 3.866 13 N -0.491 5.491 14 C 0.071 3.929 15 C -0.088 4.088 16 C 0.013 3.987 17 C -0.516 4.516 18 H 0.032 0.968 19 C 0.013 3.987 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.248 1.248 25 C -0.109 4.109 26 C 0.069 3.931 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.215 0.785 31 H 0.192 0.808 32 H 0.139 0.861 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.021 0.979 38 H 0.266 0.734 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.371 -19.964 -1.224 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.249 3.751 3 O -0.319 6.319 4 C -0.106 4.106 5 C -0.061 4.061 6 C -0.077 4.077 7 C -0.105 4.105 8 N 0.542 4.458 9 O -0.356 6.356 10 O -0.419 6.419 11 C -0.132 4.132 12 C 0.038 3.962 13 N -0.212 5.212 14 C -0.055 4.055 15 C -0.126 4.126 16 C -0.006 4.006 17 C -0.554 4.554 18 H 0.051 0.949 19 C -0.184 4.184 20 N -0.591 5.591 21 Si 0.773 3.227 22 H -0.192 1.192 23 H -0.224 1.224 24 H -0.172 1.172 25 C -0.147 4.147 26 C -0.057 4.057 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.232 0.768 31 H 0.209 0.791 32 H 0.156 0.844 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.479 -18.178 -1.295 28.938 hybrid contribution 2.158 -0.606 -0.482 2.293 sum -20.321 -18.784 -1.777 27.730 Atomic orbital electron populations 1.22310 0.89353 1.07245 1.05871 1.23007 0.93364 0.86501 0.72191 1.90758 1.72792 1.34781 1.33567 1.21516 0.92067 0.97943 0.99073 1.22029 1.03147 0.87249 0.93665 1.21472 0.89063 1.02800 0.94413 1.21413 0.93891 0.81803 1.13410 1.44002 1.01224 1.03475 0.97101 1.94474 1.69262 1.21185 1.50652 1.94609 0.96715 1.94475 1.56053 1.21688 1.02336 0.91190 0.97963 1.19090 0.93414 0.87320 0.96424 1.59314 1.28856 1.29554 1.03471 1.22179 0.96605 0.97448 0.89255 1.21347 0.97458 0.95399 0.98373 1.19147 0.93844 0.94803 0.92799 1.21347 1.22419 0.99401 1.12257 0.94919 1.25861 0.95943 0.96279 1.00325 1.70047 1.30941 1.19784 1.38284 0.85875 0.76367 0.80595 0.79826 1.19240 1.22425 1.17224 1.21826 0.98472 0.95796 0.98565 1.22139 0.93005 0.97213 0.93336 0.86192 0.88058 0.87908 0.76846 0.79119 0.84352 0.94136 0.89633 0.91888 0.93115 0.96069 0.92551 0.92615 0.94002 0.94342 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 10.19 71.24 0.73 -0.57 16 2 C 0.37 6.87 7.20 27.89 0.20 7.08 16 3 O -0.45 -13.64 15.80 -3.13 -0.05 -13.69 16 4 C -0.10 -1.73 5.88 -20.05 -0.12 -1.85 16 5 C -0.04 -0.30 9.42 22.57 0.21 -0.09 16 6 C -0.06 -0.61 9.52 22.24 0.21 -0.39 16 7 C -0.02 -0.43 6.85 36.41 0.25 -0.18 16 8 N 0.03 0.62 4.45 -46.37 -0.21 0.41 16 9 O -0.13 -2.93 18.43 18.89 0.35 -2.58 16 10 O -0.22 -6.41 18.42 18.89 0.35 -6.06 16 11 C -0.11 -2.57 8.17 22.37 0.18 -2.39 16 12 C 0.13 3.23 4.67 38.82 0.18 3.41 16 13 N -0.49 -15.41 2.57 -694.55 -1.79 -17.20 16 14 C 0.07 2.27 5.16 86.33 0.45 2.71 16 15 C -0.09 -3.57 5.32 30.65 0.16 -3.40 16 16 C 0.01 0.61 1.75 -11.46 -0.02 0.59 16 17 C -0.52 -30.31 9.14 25.60 0.23 -30.08 16 18 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 19 C 0.01 0.76 5.45 84.65 0.46 1.22 16 20 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 21 Si 0.95 46.16 24.37 68.60 1.67 47.83 16 22 H -0.27 -12.38 6.89 99.48 0.69 -11.70 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 25 C -0.11 -4.74 4.84 30.65 0.15 -4.59 16 26 C 0.07 2.38 5.10 86.33 0.44 2.82 16 27 H 0.12 -0.23 5.63 -2.38 -0.01 -0.24 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.21 -0.80 5.97 -2.91 -0.02 -0.82 16 31 H 0.19 0.81 7.59 -2.91 -0.02 0.79 16 32 H 0.14 3.67 6.64 -2.91 -0.02 3.65 16 33 H 0.04 1.25 7.55 -2.39 -0.02 1.23 16 34 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 38 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 40 H 0.04 1.88 3.38 -2.39 -0.01 1.87 16 41 H 0.04 1.28 7.30 -2.39 -0.02 1.27 16 42 H 0.08 2.50 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -79.45 341.67 5.32 -74.12 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 0.98 Total: 3.46 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.72 Total: -25.71 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -1.69 Total: -77.37 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.65 Total: -22.33 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Total: -79.45 5.32 -74.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515474033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.044 kcal (2) G-P(sol) polarization free energy of solvation -79.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds